Rh1CG282200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
55408639 .. 55409808
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG282200.1

Sequence Viewer

Length: 369 bp
ATGTTGGGAGACAATTTTCTGCATGCAAATGCCGTTAGTGATGTCCACCTTGAGTTGCAATATGGATTTCAACCTGATGATTCGGAAGATGAGGAATTCAACGTGAACTCTTATTTGGTTGACGATGGTGATTACTCCTTGGAAGAAACATCACGCACTACTCGGCTCAACCACTCAAGCGAGCCAAAGTCGGTGGTTAAGGTGTATGATGAGGGTATACATCAACAGGTAAAGAAGTACTTTCCATTGGCTATTGAAGAAGCAGTTCAGTTGGACTGCCTAATGGACTTCAGAACTAATTTCATATGGGAAGTGGTACTAGACTGGCCAGAAAATAGTCGACTTTCGATTGTTCTGTCACACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

4.33

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 217, 340
AcoI YGGCCR 1 cut(s) 326
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 274
AcvI CACGTG 1 cut(s) 364
AfaI GTAC 2 cut(s) 239, 318
AflIII ACRYGT 2 cut(s) 361, 363
AgsI TTSAA 3 cut(s) 71, 100, 257
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
Alw26I GTCTC 1 cut(s) 3
AoxI GGCC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 140
BalI TGGCCA 1 cut(s) 328
BbrPI CACGTG 1 cut(s) 364
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 1 cut(s) 320
BmcAI AGTACT 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 71, 160
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 329
BshFI GGCC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 328
BspANI GGCC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 138
BssNAI GTATAC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 24, 182
BstMAI GTCTC 1 cut(s) 3
BstNSI RCATGY 1 cut(s) 26
BstZ17I GTATAC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 24, 182
Csp6I GTAC 2 cut(s) 238, 317
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 1 cut(s) 23
CviJI RGCY 4 cut(s) 166, 184, 251, 328
CviKI_1 RGCY 4 cut(s) 166, 184, 251, 328
CviQI GTAC 2 cut(s) 238, 317
EaeI YGGCCR 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 274
Eco72I CACGTG 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 26
FaiI YATR 6 cut(s) 24, 63, 207, 218, 305, 307
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 1 cut(s) 22
FauNDI CATATG 1 cut(s) 305
FblI GTMKAC 2 cut(s) 217, 340
FspBI CTAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 328
Hin1II CATG 1 cut(s) 26
HincII GTYRAC 2 cut(s) 121, 341
HindII GTYRAC 2 cut(s) 121, 341
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 5 cut(s) 46, 106, 121, 218, 341
Hpy188I TCNGA 2 cut(s) 85, 293
Hpy8I GTNNAC 5 cut(s) 46, 106, 121, 218, 341
HpyCH4IV ACGT 2 cut(s) 102, 363
HpyCH4V TGCA 3 cut(s) 22, 26, 58
HpySE526I ACGT 2 cut(s) 102, 363
Hsp92II CATG 1 cut(s) 26
LpnPI CCDG 4 cut(s) 87, 212, 310, 342
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 102, 363
MaeIII GTNAC 1 cut(s) 357
MboII GAAGA 3 cut(s) 98, 155, 269
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 3 cut(s) 13, 95, 298
MluNI TGGCCA 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 2 cut(s) 85, 205
Mox20I TGGCCA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 264
MscI TGGCCA 1 cut(s) 328
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 328
NdeI CATATG 1 cut(s) 305
NlaIII CATG 1 cut(s) 26
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 357
NspI RCATGY 1 cut(s) 26
PaeI GCATGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 264
PfeI GAWTC 1 cut(s) 80
PmaCI CACGTG 1 cut(s) 364
PmlI CACGTG 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 364
PspCI CACGTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 239, 318
RsaNI GTAC 2 cut(s) 238, 317
RseI CAYNNNNRTG 1 cut(s) 27
SalI GTCGAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 198
ScaI AGTACT 1 cut(s) 239
SetI ASST 6 cut(s) 51, 76, 105, 204, 231, 366
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 50, 175
SmoI CTYRAG 2 cut(s) 50, 175
SphI GCATGC 1 cut(s) 26
Sse9I AATT 3 cut(s) 13, 95, 298
SspMI CTAG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 138
TaiI ACGT 2 cut(s) 105, 366
TaqI TCGA 2 cut(s) 340, 347
TasI AATT 3 cut(s) 13, 95, 298
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 292
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 217, 340
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.