RLG00000030186
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000197
Physical Location & Seq
Forward (+)
57195073 .. 57196907
1835 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030186

Sequence Viewer

Length: 678 bp
ATGTTGGGGACTGATACAGGGGCTCAGGACAAGGAGTGGTTCTTCTTCACCAGAATGTATTACAAGTACAACAAAAGCTCTCGCTCAAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGATCATGTGCCCAATTGAACAAGACCAGCTGGGTCATTCTTGAGTACTATCTTCCTAGAAATGGAGTTATTTCGTATCTGAAGCAGGCCCAGGCACAAGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGGTGACTGCTGCTCCTCAGCACTGCAGTCACCGTCGTCCCTAGAGCTGGAAGCTGTTCTGCAAACCAATGGCACCAATGATGATTGTAATGTGTTGCAATCACTATTTGGAGATAGTGATTCTTGTCTTCTAGACGGGAATAAAGTTCCAACCTATGATGAAGATGACACTATGTATGATGTGTTTCCACAGCCGCAGGATTACCGTCCCTCCATACTGCAGTCACCAATATACACAAAGCTGGAAAATGTTCCACATCCGCTTCTGCCTGAGCGCAGGATTACCAGCCCTCAATATTGCGGTCACCAATATGGACAGAGTTGGGAAATATTTCTGATGCCAATCTCTATTTTGGTGAATGCAATGATTGGCAATCTGCATTTAAGAAAAATGTTTCAATCAAAGAAGTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

226

Amino Acids

25.8

Weight (kDa)

6.42

Isoelectric Point (pI)

68.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 48 5.7e-06 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AciI CCGC 3 cut(s) 455, 521, 561
AclWI GGATC 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 2 cut(s) 68, 170
AfiI CCNNNNNNNGG 2 cut(s) 185, 307
AgsI TTSAA 2 cut(s) 142, 659
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 5 cut(s) 78, 153, 307, 314, 502
AluI AGCT 5 cut(s) 78, 153, 307, 314, 502
Alw21I GWGCWC 1 cut(s) 98
AlwI GGATC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 259
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 270
Asp700I GAANNNNTTC 3 cut(s) 315, 510, 591
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 6 cut(s) 40, 275, 282, 477, 557, 628
BaeGI GKGCMC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 98
BbvCI CCTCAGC 2 cut(s) 252, 277
BbvI GCAGC 1 cut(s) 257
BccI CCATC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 101
BfaI CTAG 3 cut(s) 180, 302, 392
BfmI CTRYAG 2 cut(s) 284, 479
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 2 cut(s) 271, 455
BlsI GCNGC 2 cut(s) 272, 456
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 380
Bpu10I CCTNAGC 4 cut(s) 24, 252, 277, 531
BpuEI CTTGAG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 307
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 2 cut(s) 185, 307
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 4 cut(s) 38, 266, 291, 522
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 245, 265
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 98
BslFI GGGAC 3 cut(s) 22, 283, 453
BslI CCNNNNNNNGG 2 cut(s) 185, 307
BsmFI GGGAC 3 cut(s) 22, 283, 453
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 3 cut(s) 25, 98, 136
Bsp143I GATC 1 cut(s) 125
BspACI CCGC 3 cut(s) 455, 521, 561
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 4 cut(s) 37, 265, 290, 523
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 2 cut(s) 288, 483
BspPI GGATC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 294, 467
Bst6I CTCTTC 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 4 cut(s) 24, 252, 277, 531
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 1 cut(s) 517
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 1 cut(s) 128
BstMBI GATC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 284, 479
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 380
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 517
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 259
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 67, 169
CviAII CATG 1 cut(s) 129
CviQI GTAC 2 cut(s) 67, 169
DdeI CTNAG 4 cut(s) 24, 252, 277, 531
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 1 cut(s) 132
FaiI YATR 8 cut(s) 130, 417, 434, 438, 476, 493, 573, 676
FaqI GGGAC 3 cut(s) 22, 283, 453
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 2 cut(s) 271, 455
FokI GGATG 1 cut(s) 504
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 271, 455
FspBI CTAG 3 cut(s) 180, 302, 392
GlaI GCGC 1 cut(s) 536
GluI GCNGC 2 cut(s) 271, 455
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 212
HhaI GCGC 1 cut(s) 537
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HinfI GANTC 1 cut(s) 380
HphI GGTGA 6 cut(s) 40, 275, 282, 477, 557, 628
Hpy166II GTNNAC 1 cut(s) 672
Hpy188I TCNGA 3 cut(s) 93, 204, 597
Hpy188III TCNNGA 3 cut(s) 26, 164, 392
Hpy8I GTNNAC 1 cut(s) 672
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 294, 467
HpyCH4V TGCA 6 cut(s) 286, 322, 358, 481, 623, 640
HpyF3I CTNAG 4 cut(s) 24, 252, 277, 531
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 93, 278
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 588
MaeI CTAG 3 cut(s) 180, 302, 392
MaeIII GTNAC 4 cut(s) 263, 288, 483, 563
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 7 cut(s) 34, 37, 112, 167, 237, 380, 434
MfeI CAATTG 1 cut(s) 137
MhlI GDGCHC 3 cut(s) 25, 98, 136
MluCI AATT 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 6 cut(s) 223, 261, 267, 286, 481, 561
MroXI GAANNNNTTC 3 cut(s) 315, 510, 591
MseI TTAA 1 cut(s) 644
MslI CAYNNNNRTG 2 cut(s) 53, 570
MspA1I CMGCKG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 215
NdeII GATC 1 cut(s) 125
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 4 cut(s) 263, 288, 483, 563
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 3 cut(s) 315, 510, 591
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 272, 456
Psp6I CCWGG 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 563
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 211
PstI CTGCAG 2 cut(s) 288, 483
PstNI CAGNNNCTG 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 153
RsaI GTAC 2 cut(s) 68, 170
RsaNI GTAC 2 cut(s) 67, 169
RseI CAYNNNNRTG 2 cut(s) 53, 570
SaqAI TTAA 1 cut(s) 644
SatI GCNGC 2 cut(s) 271, 455
Sau3AI GATC 1 cut(s) 125
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 25, 98, 136
SetI ASST 7 cut(s) 80, 155, 253, 309, 316, 416, 504
SfaNI GCATC 1 cut(s) 588
SfcI CTRYAG 2 cut(s) 284, 479
SmiMI CAYNNNNRTG 2 cut(s) 53, 570
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 137
SsiI CCGC 3 cut(s) 455, 521, 561
SspI AATATT 2 cut(s) 557, 591
SspMI CTAG 3 cut(s) 180, 302, 392
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 294, 467
TasI AATT 1 cut(s) 137
TatI WGTACW 2 cut(s) 66, 168
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 644
Tru9I TTAA 1 cut(s) 644
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 4 cut(s) 263, 288, 483, 563
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 4 cut(s) 263, 288, 483, 563
TspDTI ATGAA 1 cut(s) 435
TspRI CASTG 1 cut(s) 288
XbaI TCTAGA 1 cut(s) 391
XmnI GAANNNNTTC 3 cut(s) 315, 510, 591
XspI CTAG 3 cut(s) 180, 302, 392
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.