RLG00000030177
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000197
Physical Location & Seq
Forward (+)
57041820 .. 57043207
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030177

Sequence Viewer

Length: 666 bp
ATGAACAGGGTCGGTTCTGATTTTCGTGTTTTGCGTGTTGGGTTTGGGACTTTGGGCAGCGTTGTTGCCTTGTTGGGGACTGAGACAGAGGCTCATGACATGGGAGTTATTTCGTATCCGAAGCAGGCCCAGGCACACGGCAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCAGTCACGGGCATCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAGTTGCAATCATCATTTGGAGATGGTGATTCTTGTCTTTTGGACAGGAATGAAGTTTCAACCTGTGATGAAGATGAGACGGTGTGTGATGTGTTTCCACAGCTATGTGATCCGCCAGAAAAAAATCTGGACTCACTCTTACGTCTACCTCAGCCACAAGATCACTGCCCATCCATACTGCAGTCACCAATATACACAAAGCTGGGAAATGATCCACATCCGCTTCAGCCGTTGGATTACCAGCCCTCAATATTGCAGTCACCAATATACACAAAGTTGGGAAACGTTTCAGATCCAATATCTATTTTGGTGAATGCAATAATTGGCAATCTGCATTTAAGAAAAAAGTTTCAACCAATGAAGTTGACATACCAGTTAGACATATGTTGTCTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

222

Amino Acids

24.48

Weight (kDa)

4.64

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 223
AccI GTMKAC 1 cut(s) 412
AciI CCGC 3 cut(s) 184, 380, 488
AclI AACGTT 1 cut(s) 552
AclWI GGATC 3 cut(s) 371, 473, 554
AcuI CTGAAG 2 cut(s) 177, 476
AfiI CCNNNNNNNGG 2 cut(s) 75, 223
AgsI TTSAA 2 cut(s) 327, 620
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 4 cut(s) 223, 230, 370, 469
AluI AGCT 4 cut(s) 223, 230, 370, 469
Alw26I GTCTC 2 cut(s) 77, 338
AlwI GGATC 3 cut(s) 371, 473, 554
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 57, 186
Asp700I GAANNNNTTC 2 cut(s) 231, 553
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 4 cut(s) 305, 444, 519, 589
AxyI CCTNAGG 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 620, 652
BbvCI CCTCAGC 2 cut(s) 168, 417
BbvI GCAGC 2 cut(s) 69, 173
BccI CCATC 3 cut(s) 168, 284, 445
BceAI ACGGC 2 cut(s) 154, 481
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 77, 338
BfmI CTRYAG 2 cut(s) 200, 446
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 2 cut(s) 58, 187
BlsI GCNGC 2 cut(s) 59, 188
Bme1390I CCNGG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 168, 417
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 223
Bse1I ACTGG 1 cut(s) 640
Bse21I CCTNAGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 4 cut(s) 184, 212, 437, 484
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 75, 223
BseMII CTCAG 4 cut(s) 72, 182, 188, 431
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 69, 173
BseYI CCCAGC 1 cut(s) 469
BshFI GGCC 1 cut(s) 128
BslFI GGGAC 2 cut(s) 61, 91
BslI CCNNNNNNNGG 2 cut(s) 75, 223
BsmAI GTCTC 2 cut(s) 77, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 61, 91
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 4 cut(s) 376, 427, 478, 559
BspACI CCGC 3 cut(s) 184, 380, 488
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 4 cut(s) 73, 181, 187, 430
BspHI TCATGA 1 cut(s) 94
BspMAI CTGCAG 2 cut(s) 204, 450
BspPI GGATC 3 cut(s) 371, 473, 554
BspQI GCTCTTC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 376, 427, 478, 559
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 81, 168, 174, 417
BstF5I GGATG 4 cut(s) 184, 212, 437, 484
BstKTI GATC 4 cut(s) 379, 430, 481, 562
BstMAI GTCTC 2 cut(s) 77, 338
BstMBI GATC 4 cut(s) 376, 427, 478, 559
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 200, 446
BstV1I GCAGC 2 cut(s) 69, 173
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
Bsu36I CCTNAGG 1 cut(s) 174
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 4 cut(s) 184, 212, 437, 484
BtsI GCAGTG 2 cut(s) 197, 430
BtsIMutI CAGTG 2 cut(s) 197, 430
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 2 cut(s) 95, 100
DdeI CTNAG 4 cut(s) 81, 168, 174, 417
DpnI GATC 4 cut(s) 378, 429, 480, 561
DpnII GATC 4 cut(s) 376, 427, 478, 559
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
EciI GGCGGA 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 177, 476
Eco81I CCTNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 2 cut(s) 98, 103
FaiI YATR 9 cut(s) 96, 101, 373, 443, 460, 535, 637, 650, 652
FaqI GGGAC 2 cut(s) 61, 91
FatI CATG 2 cut(s) 94, 99
FauNDI CATATG 1 cut(s) 650
FblI GTMKAC 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 58, 187
FokI GGATG 4 cut(s) 191, 199, 424, 471
Fsp4HI GCNGC 2 cut(s) 58, 187
GluI GCNGC 2 cut(s) 58, 187
GsaI CCCAGC 1 cut(s) 473
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 2 cut(s) 98, 103
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 2 cut(s) 296, 398
HphI GGTGA 4 cut(s) 305, 444, 519, 589
Hpy166II GTNNAC 2 cut(s) 413, 633
Hpy188I TCNGA 3 cut(s) 19, 120, 559
Hpy188III TCNNGA 3 cut(s) 95, 176, 395
Hpy8I GTNNAC 2 cut(s) 413, 633
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 409, 552
HpyCH4V TGCA 7 cut(s) 202, 238, 274, 448, 523, 584, 601
HpyF3I CTNAG 4 cut(s) 81, 168, 174, 417
HpySE526I ACGT 2 cut(s) 409, 552
Hsp92II CATG 2 cut(s) 98, 103
Kzo9I GATC 4 cut(s) 376, 427, 478, 559
LguI GCTCTTC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 69, 173
LweI GCATC 1 cut(s) 221
MaeII ACGT 2 cut(s) 409, 552
MaeIII GTNAC 3 cut(s) 204, 450, 525
MalI GATC 4 cut(s) 378, 429, 480, 561
MboI GATC 4 cut(s) 376, 427, 478, 559
MboII GAAGA 2 cut(s) 183, 350
MflI RGATCY 1 cut(s) 559
MluCI AATT 2 cut(s) 588, 660
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 6 cut(s) 82, 139, 177, 183, 426, 523
MroXI GAANNNNTTC 2 cut(s) 231, 553
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 370
MspA1I CMGCKG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 650
NdeII GATC 4 cut(s) 376, 427, 478, 559
NlaIII CATG 2 cut(s) 98, 103
NmuCI GTSAC 3 cut(s) 204, 450, 525
PagI TCATGA 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 1 cut(s) 586
PdmI GAANNNNTTC 2 cut(s) 231, 553
PfeI GAWTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 2 cut(s) 59, 188
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 129
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 2 cut(s) 204, 450
PsuI RGATCY 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 2 cut(s) 58, 187
Sau3AI GATC 4 cut(s) 376, 427, 478, 559
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 131
SetI ASST 9 cut(s) 169, 225, 232, 332, 372, 412, 418, 471, 555
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 2 cut(s) 200, 446
SmiMI CAYNNNNRTG 1 cut(s) 370
Sse9I AATT 2 cut(s) 588, 660
SsiI CCGC 3 cut(s) 184, 380, 488
SspI AATATT 1 cut(s) 519
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 412, 555
TasI AATT 2 cut(s) 588, 660
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 2 cut(s) 204, 437
TseFI GTSAC 3 cut(s) 204, 450, 525
TseI GCWGC 2 cut(s) 57, 186
Tsp45I GTSAC 3 cut(s) 204, 450, 525
TspDTI ATGAA 4 cut(s) 17, 333, 351, 641
TspRI CASTG 2 cut(s) 204, 437
Van91I CCANNNNNTGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 412
XmnI GAANNNNTTC 2 cut(s) 231, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.