Rh1BG264100
NAC Family

NAC domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
39841060 .. 39841711
652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG264100.1

Sequence Viewer

Length: 561 bp
ATGTTGTTTACTGTGCAGAGGGACTTTGTTCTCTGTCGCTTGAAGAAAAAAGATGAGAGTACTAATATTGAAGCCTGCGATGAAGGTGAACCTAGCACTAACAACGCATCTGATTTTCAGAATCTAATGGCAGAGGATTTGCAAATCACATTGCAGGAAAATACTCGGCCTGACTTTCCCTCTCCTGAGTCACCTCAATCACAGGATTATTTCTTCTGCATGATGGGAGACAATATTGTGCGTGTAAATGCCGGCAGTCAATCTGCAATTGGACATGATGATTCGGAAGATGTGGAATTGTTTGTGAACTCATGTTTGGTTGACAATGGTGATTACTCCGTGGAAGAAACATCACGCACTACTCTCCTCAACCACTCAAGCGAGCCAAAGTCGTTGGTTAGGGTGTATGATGAGGGTATACATCAACAGGTAAAGAAGAACTTTCCATTGGTTGTTGAAGAAGCAGTTCAGTTGGACTGCCTAGTGGGATTCAGTATTTATATCTGTAGGAGGATATCAGGACTCTTTATGATGTGCTTGTCACTCACATTTTACGCTTAA

Protein Analysis

186

Amino Acids

21.02

Weight (kDa)

4.38

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 418
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 3 cut(s) 43, 71, 458
AjuI GAANNNNNNNTTGG 4 cut(s) 299, 331, 431, 463
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 465
AsuHPI GGTGA 3 cut(s) 98, 183, 341
BccI CCATC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 2 cut(s) 93, 482
BfmI CTRYAG 1 cut(s) 505
BmcAI AGTACT 1 cut(s) 61
BmsI GCATC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 169
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 339
BssNAI GTATAC 1 cut(s) 419
Bst1107I GTATAC 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 76, 253, 383
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 505
BstZ17I GTATAC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 76, 253, 383
Cfr10I RCCGGY 1 cut(s) 251
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 220, 275, 312
CviJI RGCY 3 cut(s) 74, 169, 385
CviKI_1 RGCY 3 cut(s) 74, 169, 385
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 516
EcoRV GATATC 1 cut(s) 516
FaeI CATG 3 cut(s) 223, 278, 315
FaiI YATR 7 cut(s) 221, 276, 313, 408, 419, 501, 530
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 219, 274, 311
FblI GTMKAC 1 cut(s) 418
FspBI CTAG 2 cut(s) 93, 482
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 252
Hin1II CATG 3 cut(s) 223, 278, 315
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 5 cut(s) 121, 188, 281, 489, 522
HpaII CCGG 1 cut(s) 252
HphI GGTGA 3 cut(s) 98, 183, 341
Hpy166II GTNNAC 5 cut(s) 9, 89, 307, 322, 419
Hpy188I TCNGA 3 cut(s) 112, 120, 286
Hpy188III TCNNGA 2 cut(s) 185, 519
Hpy8I GTNNAC 5 cut(s) 9, 89, 307, 322, 419
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 5 cut(s) 16, 142, 154, 219, 266
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 3 cut(s) 223, 278, 315
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 88, 140, 183, 188, 198, 265, 413, 504
LweI GCATC 1 cut(s) 116
MaeI CTAG 2 cut(s) 93, 482
MaeIII GTNAC 2 cut(s) 189, 540
MboII GAAGA 6 cut(s) 55, 205, 299, 356, 448, 470
MfeI CAATTG 1 cut(s) 267
MluCI AATT 2 cut(s) 267, 296
MlyI GAGTC 2 cut(s) 197, 516
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 7 cut(s) 12, 127, 190, 204, 377, 406, 504
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 559
MspI CCGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 267
NaeI GCCGGC 1 cut(s) 253
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 3 cut(s) 223, 278, 315
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 189, 540
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 121, 281, 489
PleI GAGTC 2 cut(s) 196, 516
PpsI GAGTC 2 cut(s) 196, 516
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 559
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 2 cut(s) 197, 516
SetI ASST 4 cut(s) 88, 94, 196, 432
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 2 cut(s) 267, 296
SspI AATATT 2 cut(s) 67, 235
SspMI CTAG 2 cut(s) 93, 482
TaaI ACNGT 1 cut(s) 13
TasI AATT 2 cut(s) 267, 296
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 3 cut(s) 121, 281, 489
Tru1I TTAA 1 cut(s) 559
Tru9I TTAA 1 cut(s) 559
TseFI GTSAC 2 cut(s) 189, 540
Tsp45I GTSAC 2 cut(s) 189, 540
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 2 cut(s) 93, 482
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.