Rh1AG301000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000197
Physical Location & Seq
Reverse (-)
53356252 .. 53367472
11221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG301000.1

Sequence Viewer

Length: 837 bp
ATGGAGTGTACGGGTCCCCAAGCTGTTGCAAGGACAGAGGATGATTACTCCTTCGAAGAGGAAACACACACTACTCTGAACCATTCCAGTGTGGATAAAAGAACTCTAGAAGCTGCACAGGACATTACTTTACCTGTTGCTTCAAGCCTGTCCGAACGAGATAAAGATGTTCTGCTTCTTAACCAGATATTCGGGAAGGATGATGCCTCTGTTAATGTTGCAGTCAATAAACATCGGGATATTGACCGTGTTCAATCAGTGACTGACGAAATCAAGCATGAACCAAGTCCCATTTTGTTACAGGAGCCACAGGCTTCCTTTAGCCGTGATGAACATTCGATTAATTGTCTCACCTTAGTCACTGATGATGAAAGTTCTATAAACAAAAGCAGGCGCAGGCAGAGATCTAAAACCACAGTATTAGCAAGCCTCCAGGGGAAGACTAAAACTGCGCAATCATTTGATTATGGGGAAGTGCTACAAGCACATGAAAAACGTTATGTTGAGGATCAAGATATAGAAGGAGCTGGACAGGCCTTCAGTTTACCTGTTGCTTCAAGCCTATCCGAACTGCGCAGGCAGACATCTATAATCAGACAAACTGCACAATCATCCTTCTCATGGCACAAGGGGAAGACTGAAACTGGGCAATCATTTGGTTATAAGGAAGCGCTACAAGCACTTGTGACTGATGAAAAACATTATGTTGAGGGTCAAGATATAGAAGCAGCTGGACAGGTAAGAATTTACCCTCCATTAGTTTTTGTAAAAAGAATGCTCCAATGGCAATTGAACCGCAACATATGTATATGTAGGAGAATATCACAACATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.39

Weight (kDa)

5.75

Isoelectric Point (pI)

70.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
Acc16I TGCGCA 2 cut(s) 453, 575
AciI CCGC 1 cut(s) 796
AclI AACGTT 1 cut(s) 496
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 1 cut(s) 744
AcuI CTGAAG 1 cut(s) 523
AfaI GTAC 1 cut(s) 10
AfeI AGCGCT 1 cut(s) 672
AfiI CCNNNNNNNGG 1 cut(s) 621
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 4 cut(s) 144, 254, 558, 793
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 4 cut(s) 23, 113, 527, 731
AluI AGCT 4 cut(s) 23, 113, 527, 731
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 516
AlwNI CAGNNNCTG 1 cut(s) 263
Aor51HI AGCGCT 1 cut(s) 672
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 2 cut(s) 113, 728
ApoI RAATTY 1 cut(s) 744
AseI ATTAAT 1 cut(s) 342
AspLEI GCGC 4 cut(s) 396, 454, 576, 673
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 343
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 14
BbsI GAAGAC 2 cut(s) 446, 641
BbvI GCAGC 2 cut(s) 100, 740
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 674
BglII AGATCT 1 cut(s) 404
BisI GCNGC 2 cut(s) 114, 729
BlsI GCNGC 2 cut(s) 115, 730
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 3 cut(s) 15, 16, 306
BmrFI CCNGG 1 cut(s) 434
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 2 cut(s) 446, 641
BpmI CTGGAG 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 2 cut(s) 87, 649
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 3 cut(s) 46, 205, 611
BseLI CCNNNNNNNGG 1 cut(s) 621
BseNI ACTGG 2 cut(s) 87, 649
BseXI GCAGC 2 cut(s) 100, 740
BsgI GTGCAG 2 cut(s) 99, 588
BshFI GGCC 1 cut(s) 536
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 621
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 780
BsnI GGCC 1 cut(s) 536
Bsp119I TTCGAA 1 cut(s) 54
Bsp143I GATC 2 cut(s) 404, 508
BspACI CCGC 1 cut(s) 796
BspANI GGCC 1 cut(s) 536
BspLI GGNNCC 3 cut(s) 15, 16, 306
BspPI GGATC 1 cut(s) 516
BspT104I TTCGAA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 87, 649
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 2 cut(s) 404, 508
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 2 cut(s) 248, 418
Bst6I CTCTTC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 4 cut(s) 392, 398, 427, 578
BstDEI CTNAG 1 cut(s) 355
BstF5I GGATG 3 cut(s) 46, 205, 611
BstH2I RGCGCY 1 cut(s) 674
BstHHI GCGC 4 cut(s) 396, 454, 576, 673
BstKTI GATC 2 cut(s) 407, 511
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 404, 508
BstMWI GCNNNNNNNGC 3 cut(s) 533, 677, 784
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 100, 740
BstV2I GAAGAC 2 cut(s) 446, 641
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 1 cut(s) 536
BtsCI GGATG 3 cut(s) 46, 205, 611
BtsIMutI CAGTG 3 cut(s) 94, 264, 360
Cac8I GCNNGC 4 cut(s) 392, 398, 427, 578
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 4 cut(s) 396, 454, 576, 673
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 9
CviAII CATG 4 cut(s) 278, 488, 621, 830
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 355
DpnI GATC 2 cut(s) 406, 510
DpnII GATC 2 cut(s) 404, 508
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 14
Eco47III AGCGCT 1 cut(s) 672
Eco57I CTGAAG 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 281, 491, 624, 833
FaqI GGGAC 1 cut(s) 273
FatI CATG 4 cut(s) 277, 487, 620, 829
FauNDI CATATG 1 cut(s) 803
Fnu4HI GCNGC 2 cut(s) 114, 729
FokI GGATG 3 cut(s) 53, 212, 598
Fsp4HI GCNGC 2 cut(s) 114, 729
FspBI CTAG 1 cut(s) 107
FspI TGCGCA 2 cut(s) 453, 575
GlaI GCGC 4 cut(s) 395, 453, 575, 672
GluI GCNGC 2 cut(s) 114, 729
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 1 cut(s) 674
HaeIII GGCC 1 cut(s) 536
HhaI GCGC 4 cut(s) 396, 454, 576, 673
Hin1II CATG 4 cut(s) 281, 491, 624, 833
Hin6I GCGC 4 cut(s) 394, 452, 574, 671
HinP1I GCGC 4 cut(s) 394, 452, 574, 671
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 9, 545
Hpy188I TCNGA 4 cut(s) 78, 154, 568, 596
Hpy188III TCNNGA 5 cut(s) 107, 193, 236, 512, 716
Hpy8I GTNNAC 2 cut(s) 9, 545
HpyAV CCTTC 5 cut(s) 61, 190, 515, 547, 625
HpyCH4III ACNGT 2 cut(s) 248, 418
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 4 cut(s) 29, 116, 221, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 677, 784
HpyF3I CTNAG 1 cut(s) 355
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 4 cut(s) 281, 491, 624, 833
HspAI GCGC 4 cut(s) 394, 452, 574, 671
KflI GGGWCCC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 404, 508
LmnI GCTCC 3 cut(s) 304, 524, 783
Lsp1109I GCAGC 2 cut(s) 100, 740
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 4 cut(s) 259, 297, 358, 685
MalI GATC 2 cut(s) 406, 510
MboI GATC 2 cut(s) 404, 508
MboII GAAGA 3 cut(s) 68, 451, 646
MfeI CAATTG 1 cut(s) 788
MflI RGATCY 1 cut(s) 404
MluCI AATT 3 cut(s) 343, 744, 788
MnlI CCTC 7 cut(s) 31, 52, 217, 440, 499, 703, 762
MseI TTAA 3 cut(s) 180, 213, 342
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 731
MspR9I CCNGG 1 cut(s) 434
MunI CAATTG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 780
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 3 cut(s) 533, 677, 784
NdeI CATATG 1 cut(s) 803
NdeII GATC 2 cut(s) 404, 508
NlaIII CATG 4 cut(s) 281, 491, 624, 833
NlaIV GGNNCC 3 cut(s) 15, 16, 306
NmuCI GTSAC 3 cut(s) 259, 358, 685
NsbI TGCGCA 2 cut(s) 453, 575
NspI RCATGY 1 cut(s) 833
NspV TTCGAA 1 cut(s) 54
PceI AGGCCT 1 cut(s) 536
PciI ACATGT 1 cut(s) 829
PctI GAATGC 1 cut(s) 780
PkrI GCNGC 2 cut(s) 115, 730
PpuMI RGGWCCY 1 cut(s) 14
PscI ACATGT 1 cut(s) 829
PshBI ATTAAT 1 cut(s) 342
PsiI TTATAA 1 cut(s) 663
Psp1406I AACGTT 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 3 cut(s) 15, 16, 306
PspPI GGNCC 1 cut(s) 14
PspPPI RGGWCCY 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 404
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 180, 213, 342
SatI GCNGC 2 cut(s) 114, 729
Sau3AI GATC 2 cut(s) 404, 508
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 434
SetI ASST 9 cut(s) 25, 115, 136, 356, 499, 529, 550, 733, 741
SfaNI GCATC 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 3 cut(s) 343, 744, 788
SseBI AGGCCT 1 cut(s) 536
SsiI CCGC 1 cut(s) 796
SspMI CTAG 1 cut(s) 107
StuI AGGCCT 1 cut(s) 536
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 248, 418
TaiI ACGT 1 cut(s) 499
TaqI TCGA 2 cut(s) 54, 338
TasI AATT 3 cut(s) 343, 744, 788
Tru1I TTAA 3 cut(s) 180, 213, 342
Tru9I TTAA 3 cut(s) 180, 213, 342
TscAI CASTG 3 cut(s) 94, 264, 367
TseFI GTSAC 3 cut(s) 259, 358, 685
TseI GCWGC 2 cut(s) 113, 728
Tsp45I GTSAC 3 cut(s) 259, 358, 685
TspDTI ATGAA 5 cut(s) 294, 345, 384, 504, 708
TspRI CASTG 3 cut(s) 94, 264, 367
VpaK11BI GGWCC 1 cut(s) 14
VspI ATTAAT 1 cut(s) 342
XapI RAATTY 1 cut(s) 744
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 833
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.