Rroxscaffold_159G00433060
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000197
Physical Location & Seq
Reverse (-)
779553 .. 781688
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00433060.1

Sequence Viewer

Length: 876 bp
ATGGCATCTGAAATGACACCACCGGCAGAACTCGAACTTCCGGGATTCCGATTCCATCCCACAGAGGAAGAGCTTCTTGAGTTCTACCTCAAGAGCGTGGAGTTCGGAAAGCGATTGCGCTTCGATATAATCCAGTTTCTGAACATCTACCGTCATGATCCTTGGGACTTGCCTGGATTGTCAAAGATTGGAGAAAGGGAGTGGTACTTTTTTGTGCCCAGGGACAGGAAGCATGGGAGTCGAGGAAGGCCTAACAGAACCACTGAAACTGGGTTTTGGAAAGCGACTGCTTCCGACCGCAAAATTGGAGAGGCTTTCTATCACTTGAAGATTAAATCAGATAAGAAGGATTCTTCGGTCAGTAATGAAGGAGAACCCAGTAGCGCGAGTGTGTCTAATTGCAAAAATCAAGCTGCTGATAAAATGAATCAAGAGGCACAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCGGTCACGGGCATCCCACGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATAATTGTAGTGAGTTGCAATCACCATTTGGAGATGGTGATTCTTGTCTTTTAGACGGGAATGAAGTTTCAACTTGTGATGAATATGAGACTGTATATGATGTGTTTCCACAGCTATGTGATCCGCCGGATGAAAATCTGGAATCACTCTTACGTCCACCTCAGCAACAAGATTACCGCCCCTCCATATGCATAAAGCTGGGGAAATGTTCCACATCCGCTTCAGCCGTAGGATTACCAGCCCTCAATATTGCAGTCACCAATATACGCAAAGTTGGGAAATGTTTCAGATGCCAATCTCTGTTGATAGGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

291

Amino Acids

32.84

Weight (kDa)

5.31

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 14 - 104 4.7e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 1 cut(s) 386
AciI CCGC 6 cut(s) 298, 487, 505, 683, 736, 777
AclWI GGATC 2 cut(s) 152, 674
AcuI CTGAAG 2 cut(s) 480, 765
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 225, 526
AgsI TTSAA 2 cut(s) 328, 630
AjnI CCWGG 2 cut(s) 172, 218
AluBI AGCT 6 cut(s) 73, 413, 526, 533, 673, 757
AluI AGCT 6 cut(s) 73, 413, 526, 533, 673, 757
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 152, 674
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 2 cut(s) 248, 868
ApeKI GCWGC 2 cut(s) 413, 489
Asp700I GAANNNNTTC 3 cut(s) 72, 534, 842
AspLEI GCGC 2 cut(s) 120, 386
AsuC2I CCSGG 1 cut(s) 42
AsuHPI GGTGA 3 cut(s) 573, 608, 808
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 219
BauI CACGAG 1 cut(s) 521
BbvCI CCTCAGC 2 cut(s) 471, 720
BbvI GCAGC 2 cut(s) 400, 476
BccI CCATC 3 cut(s) 63, 471, 587
BceAI ACGGC 1 cut(s) 770
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 2 cut(s) 174, 220
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 641
BisI GCNGC 2 cut(s) 414, 490
BlsI GCNGC 2 cut(s) 415, 491
Bme1390I CCNGG 3 cut(s) 42, 174, 220
BmrFI CCNGG 3 cut(s) 42, 174, 220
BmrI ACTGGG 2 cut(s) 279, 372
BmsI GCATC 3 cut(s) 14, 524, 839
BmuI ACTGGG 2 cut(s) 279, 372
Bpu10I CCTNAGC 2 cut(s) 471, 720
BpuEI CTTGAG 2 cut(s) 74, 98
BpuMI CCSGG 1 cut(s) 42
BsaBI GATNNNNATC 2 cut(s) 693, 853
BsaJI CCNNGG 3 cut(s) 161, 218, 219
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 526
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 133, 274, 378
Bse21I CCTNAGG 1 cut(s) 477
Bse8I GATNNNNATC 2 cut(s) 693, 853
BseBI CCWGG 2 cut(s) 174, 220
BseDI CCNNGG 3 cut(s) 161, 218, 219
BseGI GGATG 5 cut(s) 55, 487, 515, 694, 773
BseJI GATNNNNATC 2 cut(s) 693, 853
BseLI CCNNNNNNNGG 2 cut(s) 225, 526
BseMII CTCAG 3 cut(s) 485, 491, 734
BseNI ACTGG 3 cut(s) 133, 274, 378
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 219
BseXI GCAGC 2 cut(s) 400, 476
BseYI CCCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 250, 870
BsiEI CGRYCG 1 cut(s) 298
BsiSI CCGG 3 cut(s) 23, 41, 686
BslFI GGGAC 2 cut(s) 179, 236
BslI CCNNNNNNNGG 2 cut(s) 225, 526
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 2 cut(s) 179, 236
BsnI GGCC 2 cut(s) 250, 870
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 157, 679
BspACI CCGC 6 cut(s) 298, 487, 505, 683, 736, 777
BspANI GGCC 2 cut(s) 250, 870
BspCNI CTCAG 3 cut(s) 484, 490, 733
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 154
BspPI GGATC 2 cut(s) 152, 674
BspQI GCTCTTC 2 cut(s) 63, 499
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 3 cut(s) 133, 274, 378
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 161, 218, 219
BssMI GATC 2 cut(s) 157, 679
BssSI CACGAG 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 174, 220
Bst4CI ACNGT 2 cut(s) 152, 652
Bst6I CTCTTC 3 cut(s) 63, 439, 499
BstDEI CTNAG 3 cut(s) 471, 477, 720
BstF5I GGATG 5 cut(s) 55, 487, 515, 694, 773
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 2 cut(s) 120, 386
BstKTI GATC 2 cut(s) 160, 682
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 2 cut(s) 157, 679
BstMCI CGRYCG 1 cut(s) 298
BstNI CCWGG 2 cut(s) 174, 220
BstSCI CCNGG 3 cut(s) 40, 172, 218
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 400, 476
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 2 cut(s) 250, 870
BtsCI GGATG 5 cut(s) 55, 487, 515, 694, 773
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 2 cut(s) 261, 500
CaiI CAGNNNCTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 154
CfoI GCGC 2 cut(s) 120, 386
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 155, 233
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 471, 477, 720
DpnI GATC 2 cut(s) 159, 681
DpnII GATC 2 cut(s) 157, 679
Eam1104I CTCTTC 3 cut(s) 63, 439, 499
EarI CTCTTC 3 cut(s) 63, 439, 499
EciI GGCGGA 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 161
Eco147I AGGCCT 2 cut(s) 250, 870
Eco57I CTGAAG 2 cut(s) 480, 765
Eco81I CCTNAGG 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 172, 218
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 158, 236
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 2 cut(s) 179, 236
FatI CATG 2 cut(s) 154, 232
FauNDI CATATG 1 cut(s) 746
Fnu4HI GCNGC 2 cut(s) 414, 490
FokI GGATG 5 cut(s) 42, 494, 502, 701, 760
Fsp4HI GCNGC 2 cut(s) 414, 490
GlaI GCGC 2 cut(s) 119, 385
GluI GCNGC 2 cut(s) 414, 490
GsaI CCCAGC 1 cut(s) 761
HaeIII GGCC 2 cut(s) 250, 870
HapII CCGG 3 cut(s) 23, 41, 686
HhaI GCGC 2 cut(s) 120, 386
Hin1II CATG 2 cut(s) 158, 236
Hin6I GCGC 2 cut(s) 118, 384
HinP1I GCGC 2 cut(s) 118, 384
HinfI GANTC 7 cut(s) 45, 51, 238, 350, 427, 599, 701
HpaII CCGG 3 cut(s) 23, 41, 686
HphI GGTGA 3 cut(s) 573, 608, 808
Hpy166II GTNNAC 1 cut(s) 716
Hpy188I TCNGA 7 cut(s) 10, 50, 107, 141, 295, 340, 848
Hpy188III TCNNGA 6 cut(s) 77, 91, 155, 431, 479, 698
Hpy8I GTNNAC 1 cut(s) 716
HpyAV CCTTC 3 cut(s) 240, 340, 362
HpyCH4III ACNGT 2 cut(s) 152, 652
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 5 cut(s) 402, 541, 577, 750, 812
HpyF3I CTNAG 3 cut(s) 471, 477, 720
HpySE526I ACGT 1 cut(s) 712
Hsp92II CATG 2 cut(s) 158, 236
HspAI GCGC 2 cut(s) 118, 384
Kzo9I GATC 2 cut(s) 157, 679
LguI GCTCTTC 2 cut(s) 63, 499
Lsp1109I GCAGC 2 cut(s) 400, 476
LweI GCATC 3 cut(s) 14, 524, 839
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 2 cut(s) 507, 814
MalI GATC 2 cut(s) 159, 681
MboI GATC 2 cut(s) 157, 679
MboII GAAGA 5 cut(s) 80, 340, 345, 456, 486
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 3 cut(s) 303, 397, 562
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 318
Mph1103I ATGCAT 1 cut(s) 752
MroXI GAANNNNTTC 3 cut(s) 72, 534, 842
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 673
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 3 cut(s) 23, 41, 686
MspR9I CCNGG 3 cut(s) 42, 174, 220
MvaI CCWGG 2 cut(s) 174, 220
MvnI CGCG 1 cut(s) 386
NciI CCSGG 1 cut(s) 42
NdeI CATATG 1 cut(s) 746
NdeII GATC 2 cut(s) 157, 679
NlaIII CATG 2 cut(s) 158, 236
NmuCI GTSAC 2 cut(s) 507, 814
NsiI ATGCAT 1 cut(s) 752
PagI TCATGA 1 cut(s) 154
PasI CCCWGGG 1 cut(s) 219
PceI AGGCCT 2 cut(s) 250, 870
PciSI GCTCTTC 2 cut(s) 63, 499
PdmI GAANNNNTTC 3 cut(s) 72, 534, 842
PfeI GAWTC 6 cut(s) 45, 51, 350, 427, 599, 701
PflMI CCANNNNNTGG 1 cut(s) 526
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 2 cut(s) 415, 491
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 172, 218
PspFI CCCAGC 1 cut(s) 757
PspGI CCWGG 2 cut(s) 172, 218
PstNI CAGNNNCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 673
SapI GCTCTTC 2 cut(s) 63, 499
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 414, 490
Sau3AI GATC 2 cut(s) 157, 679
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 42, 174, 220
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 3 cut(s) 14, 524, 839
SmiMI CAYNNNNRTG 1 cut(s) 673
SmlI CTYRAG 2 cut(s) 77, 89
SmoI CTYRAG 2 cut(s) 77, 89
Sse9I AATT 3 cut(s) 303, 397, 562
SseBI AGGCCT 2 cut(s) 250, 870
SsiI CCGC 6 cut(s) 298, 487, 505, 683, 736, 777
SspI AATATT 1 cut(s) 808
StuI AGGCCT 2 cut(s) 250, 870
StyD4I CCNGG 3 cut(s) 40, 172, 218
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 152, 652
TaiI ACGT 1 cut(s) 715
TaqI TCGA 3 cut(s) 33, 123, 241
TaqII GACCGA 1 cut(s) 346
TasI AATT 3 cut(s) 303, 397, 562
TfiI GAWTC 6 cut(s) 45, 51, 350, 427, 599, 701
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 268, 507
TseFI GTSAC 2 cut(s) 507, 814
TseI GCWGC 2 cut(s) 413, 489
Tsp45I GTSAC 2 cut(s) 507, 814
TspDTI ATGAA 5 cut(s) 381, 440, 636, 654, 705
TspRI CASTG 2 cut(s) 268, 507
Van91I CCANNNNNTGG 1 cut(s) 526
XmnI GAANNNNTTC 3 cut(s) 72, 534, 842
Zsp2I ATGCAT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.