Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Reverse (-)

53952924 .. 53955565

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGCTGCGTCATCCTCAAGACTTCGGGAGGGTTACCGATTCGACCCCAGAGAGCTTCCGGTGGGTTACCGATTCCACCCAACAGAGGAGGAGTTGGTCGATCACTTCCTCAAGAACAAGATGCAAGGCTACGCCTTCGACGAGGTTCCGGAAGTAGACATCTGCAAGCACGAGCCTTGGGATTTGCCTGCGTTTTCACCGTTAAGGTCGGATGATGAGGAGTGGTTCTACTTCAGTAGACCGGATTACAAGTCCGGCAAGAAACAGGGCCAGGCCAACCGGGCCACCGAGGGAGGGTTTTGGAAGATCACTGCGAAAGAGGGTACTATCAGAGCTCGGAGGTCCAAGGCTGTGATTGGGAAGAAGAGAATTTTGACCTTCTATACTGGGAAAGTTCGGAGTGGGCAGAAGACCAGTTGGGGGATTCATGAGTACTACATACCTGAAACTCAGCTTCCTAATGCTGCTAGGCAGAGGGACTTTGTTCTCTGTCGCTTGAAGAAAAAAGATGAGAGTACTAATATTGAAGCCTGCGATGAAGGTGAACCTAGCACTAACAACGCATCTGATTTTCAGAATCTAATGGTAGAGGATTTGCAAATCGCATTGCAGGAAAATACTCAGCCTGACTTTCCCTCTCCTGAGTCACCTCAATCACAGGATTATTTCTTCTACATGATGGGAGACAATATTGTGCGTGTAAATGCCGGTAGTGAATCTGCAATTGGACATGATGATTCGGAAGATGTGGAATTGTTTGTGAACTCATGTTTGGTTGACGATGGTGATTACTCCGTGGAAGAAACATCACGCACTACTCTCCTCAACCACTCAAGCGCGCCAAAGTCGGTGCTTAAGGTGTATGATGAGGGTATACATCAACAGGGCATGAGTTCACCTGTTGCTTCAAACCTGTCCGTACAAGATACAAATGTTATGCTTCTTGAGTTCTTGCAGAAGAATGCCTCCTCTGTCAACGTTGGAGCTAGCTTACCTCGGACTGCTAAGCAGCTGCAGGCTGACTTTGGCAATGATATGCTTTTGAGGACCTTGGTCACTGATAAAAGTTCTTTAAATGAAAGCGGGCGCAGGAAAGGTGGCATATTTATAACTGAAAGAGCAGAAAAACAATCAGGACCAGCAGCATTTCCTCTTCAACCAGCTGACTGCATAACTCAGAGAAGGGTGAGGCCTGCAACTGCACAATCAGATGCATTAAGTATAAAACAAGGACATAATCCACAGAAAGTCAAGAACGAAAGCAAGTTGCCCGAGAAGCCCATGGCGCCTCCAAGCAATGATAAAGGAGAGCGTATGAAGCAGAAACAAACTGGAACAACCATCAGCGATTGGAAGAGTTCATTCATTGTCTGGAAGGAATCCCCATTAAGCCTTAGATCATATCCTCCAGCAGTATACACTTGTTACATGATAGGAGGCTTGGTTTTGTTCATATTTTTTGTTGAGGAACTAATTTCATATGGGAAGCGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

498

Amino Acids

56.14

Weight (kDa)

6.02

Isoelectric Point (pI)

62.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	20 - 146	9.7e-34	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1109
AccB1I	GGYRCC	1 cut(s)	1285
AccI	GTMKAC	4 cut(s)	156, 238, 874, 1416
AccII	CGCG	1 cut(s)	839
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	2 cut(s)	1083, 1489
AclI	AACGTT	1 cut(s)	978
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	1286
AfaI	GTAC	5 cut(s)	325, 434, 517, 921, 1493
AfiI	CCNNNNNNNGG	3 cut(s)	85, 294, 420
AflII	CTTAAG	1 cut(s)	854
AgsI	TTSAA	4 cut(s)	499, 527, 909, 1157
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	4 cut(s)	708, 740, 755, 787
AluBI	AGCT	7 cut(s)	55, 335, 454, 986, 990, 1012, 1163
AluI	AGCT	7 cut(s)	55, 335, 454, 986, 990, 1012, 1163
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	678
Ama87I	CYCGRG	1 cut(s)	1271
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	4 cut(s)	268, 273, 282, 1190
ApeKI	GCWGC	5 cut(s)	5, 464, 1009, 1012, 1142
ApoI	RAATTY	1 cut(s)	369
AspLEI	GCGC	4 cut(s)	839, 841, 1089, 1288
AspS9I	GGNCC	5 cut(s)	268, 282, 342, 1047, 1136
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	6 cut(s)	189, 554, 639, 797, 888, 1198
AsuNHI	GCTAGC	1 cut(s)	986
AvaI	CYCGRG	1 cut(s)	1271
AvaII	GGWCC	3 cut(s)	342, 1047, 1136
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanI	GGYRCC	1 cut(s)	1285
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	4 cut(s)	451, 999, 1021, 1154
BccI	CCATC	3 cut(s)	673, 776, 1349
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	4 cut(s)	468, 549, 987, 1495
BfmI	CTRYAG	1 cut(s)	1013
BfoI	RGCGCY	1 cut(s)	1289
BfrI	CTTAAG	1 cut(s)	854
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	5 cut(s)	6, 465, 1010, 1013, 1143
BlpI	GCTNAGC	1 cut(s)	1005
BlsI	GCNGC	5 cut(s)	7, 466, 1011, 1014, 1144
BmcAI	AGTACT	2 cut(s)	434, 517
Bme1390I	CCNGG	2 cut(s)	272, 281
Bme18I	GGWCC	3 cut(s)	342, 1047, 1136
BmeT110I	CYCGRG	1 cut(s)	1271
BmgT120I	GGNCC	5 cut(s)	268, 282, 342, 1047, 1136
BmiI	GGNNCC	2 cut(s)	147, 1287
BmrFI	CCNGG	2 cut(s)	272, 281
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	111, 572, 1201
BmtI	GCTAGC	1 cut(s)	990
BmuI	ACTGGG	1 cut(s)	396
BoxI	GACNNNNGTC	1 cut(s)	1052
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	1392
Bpu1102I	GCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	3 cut(s)	95, 817, 965
BpuMI	CCSGG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	1286
BsaJI	CCNNGG	7 cut(s)	176, 288, 345, 795, 995, 1050, 1281
BsaWI	WCCGGW	3 cut(s)	58, 148, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	1428, 1458
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 294, 420
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	391, 414, 1336
Bse3DI	GCAATG	3 cut(s)	605, 1036, 1303
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	7 cut(s)	176, 288, 345, 795, 995, 1050, 1281
BseGI	GGATG	2 cut(s)	11, 217
BseLI	CCNNNNNNNGG	3 cut(s)	85, 294, 420
BseMI	GCAATG	3 cut(s)	605, 1036, 1303
BseMII	CTCAG	4 cut(s)	464, 633, 635, 1190
BseNI	ACTGG	3 cut(s)	391, 414, 1336
BsePI	GCGCGC	1 cut(s)	837
BseRI	GAGGAG	5 cut(s)	101, 104, 233, 812, 958
BseXI	GCAGC	4 cut(s)	451, 999, 1021, 1154
BsgI	GTGCAG	1 cut(s)	1185
Bsh1236I	CGCG	1 cut(s)	839
BshFI	GGCC	4 cut(s)	270, 275, 284, 1192
BshNI	GGYRCC	1 cut(s)	1285
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	1271
BsiSI	CCGG	6 cut(s)	59, 149, 242, 255, 280, 708
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	85, 294, 420
BsmAI	GTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	967
BsnI	GGCC	4 cut(s)	270, 275, 284, 1192
BsoBI	CYCGRG	1 cut(s)	1271
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	100, 306, 1397
Bsp1720I	GCTNAGC	1 cut(s)	1005
Bsp19I	CCATGG	1 cut(s)	1281
BspACI	CCGC	2 cut(s)	1083, 1489
BspANI	GGCC	4 cut(s)	270, 275, 284, 1192
BspCNI	CTCAG	4 cut(s)	463, 634, 634, 1189
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	839
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	147, 1287
BspMAI	CTGCAG	1 cut(s)	1017
BspOI	GCTAGC	1 cut(s)	990
BspT107I	GGYRCC	1 cut(s)	1285
BspTI	CTTAAG	1 cut(s)	854
BsrDI	GCAATG	3 cut(s)	605, 1036, 1303
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	391, 414, 1336
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	7 cut(s)	176, 288, 345, 795, 995, 1050, 1281
BssHII	GCGCGC	1 cut(s)	837
BssMI	GATC	3 cut(s)	100, 306, 1397
BssNAI	GTATAC	2 cut(s)	875, 1417
BssNI	GRCGYC	1 cut(s)	1286
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	4 cut(s)	176, 345, 1050, 1281
Bst1107I	GTATAC	2 cut(s)	875, 1417
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	3 cut(s)	359, 1158, 1349
BstACI	GRCGYC	1 cut(s)	1286
BstAFI	CTTAAG	1 cut(s)	854
BstC8I	GCNNGC	8 cut(s)	167, 189, 532, 839, 988, 1017, 1085, 1194
BstDEI	CTNAG	6 cut(s)	450, 621, 642, 1005, 1176, 1394
BstDSI	CCRYGG	2 cut(s)	795, 1281
BstEII	GGTNACC	2 cut(s)	32, 65
BstF5I	GGATG	2 cut(s)	11, 217
BstFNI	CGCG	1 cut(s)	839
BstH2I	RGCGCY	1 cut(s)	1289
BstHHI	GCGC	4 cut(s)	839, 841, 1089, 1288
BstKTI	GATC	3 cut(s)	103, 309, 1400
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	3 cut(s)	100, 306, 1397
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 1276, 1285, 1318
BstNI	CCWGG	1 cut(s)	272
BstPAI	GACNNNNGTC	1 cut(s)	1052
BstPI	GGTNACC	2 cut(s)	32, 65
BstSCI	CCNGG	2 cut(s)	270, 279
BstSFI	CTRYAG	1 cut(s)	1013
BstUI	CGCG	1 cut(s)	839
BstV1I	GCAGC	4 cut(s)	451, 999, 1021, 1154
BstV2I	GAAGAC	1 cut(s)	416
BstZ17I	GTATAC	2 cut(s)	875, 1417
BsuRI	GGCC	4 cut(s)	270, 275, 284, 1192
BtgI	CCRYGG	2 cut(s)	795, 1281
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	11, 217
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	309, 1056
Cac8I	GCNNGC	8 cut(s)	167, 189, 532, 839, 988, 1017, 1085, 1194
CciI	TCATGA	1 cut(s)	427
CfoI	GCGC	4 cut(s)	839, 841, 1089, 1288
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	5 cut(s)	268, 282, 342, 1047, 1136
Csp6I	GTAC	5 cut(s)	324, 433, 516, 920, 1492
CviAII	CATG	7 cut(s)	428, 676, 731, 768, 889, 1282, 1429
CviQI	GTAC	5 cut(s)	324, 433, 516, 920, 1492
DdeI	CTNAG	6 cut(s)	450, 621, 642, 1005, 1176, 1394
DinI	GGCGCC	1 cut(s)	1287
DpnI	GATC	3 cut(s)	102, 308, 1399
DpnII	GATC	3 cut(s)	100, 306, 1397
DraI	TTTAAA	1 cut(s)	1074
Eam1104I	CTCTTC	3 cut(s)	359, 1158, 1349
EarI	CTCTTC	3 cut(s)	359, 1158, 1349
Ecl136II	GAGCTC	1 cut(s)	335
Eco130I	CCWWGG	4 cut(s)	176, 345, 1050, 1281
Eco147I	AGGCCT	1 cut(s)	1192
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	342, 1047, 1136
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	1271
Eco91I	GGTNACC	2 cut(s)	32, 65
EcoICRI	GAGCTC	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	1047
EcoO65I	GGTNACC	2 cut(s)	32, 65
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	4 cut(s)	176, 345, 1050, 1281
EcoT22I	ATGCAT	1 cut(s)	1216
EcoT38I	GRGCYC	1 cut(s)	337
EgeI	GGCGCC	1 cut(s)	1287
EheI	GGCGCC	1 cut(s)	1287
ErhI	CCWWGG	4 cut(s)	176, 345, 1050, 1281
FaeI	CATG	7 cut(s)	431, 679, 734, 771, 892, 1285, 1432
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	7 cut(s)	427, 675, 730, 767, 888, 1281, 1428
FauI	CCCGC	1 cut(s)	1076
FauNDI	CATATG	1 cut(s)	1480
FblI	GTMKAC	4 cut(s)	156, 238, 874, 1416
Fnu4HI	GCNGC	5 cut(s)	6, 465, 1010, 1013, 1143
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	6, 465, 1010, 1013, 1143
FspBI	CTAG	4 cut(s)	468, 549, 987, 1495
GlaI	GCGC	4 cut(s)	838, 840, 1088, 1287
GluI	GCNGC	5 cut(s)	6, 465, 1010, 1013, 1143
GsuI	CTGGAG	1 cut(s)	1392
HaeII	RGCGCY	1 cut(s)	1289
HaeIII	GGCC	4 cut(s)	270, 275, 284, 1192
HapII	CCGG	6 cut(s)	59, 149, 242, 255, 280, 708
HhaI	GCGC	4 cut(s)	839, 841, 1089, 1288
Hin1I	GRCGYC	1 cut(s)	1286
Hin1II	CATG	7 cut(s)	431, 679, 734, 771, 892, 1285, 1432
Hin6I	GCGC	4 cut(s)	837, 839, 1087, 1286
HinP1I	GCGC	4 cut(s)	837, 839, 1087, 1286
HincII	GTYRAC	2 cut(s)	778, 976
HindII	GTYRAC	2 cut(s)	778, 976
HinfI	GANTC	8 cut(s)	39, 72, 424, 577, 644, 716, 737, 1379
HpaII	CCGG	6 cut(s)	59, 149, 242, 255, 280, 708
HphI	GGTGA	6 cut(s)	189, 554, 639, 797, 888, 1198
Hpy166II	GTNNAC	9 cut(s)	157, 239, 545, 763, 778, 875, 896, 976, 1417
Hpy8I	GTNNAC	9 cut(s)	157, 239, 545, 763, 778, 875, 896, 976, 1417
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	5 cut(s)	145, 388, 533, 1176, 1369
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	978
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 1276, 1285, 1318
HpyF3I	CTNAG	6 cut(s)	450, 621, 642, 1005, 1176, 1394
HpySE526I	ACGT	1 cut(s)	978
Hsp92I	GRCGYC	1 cut(s)	1286
Hsp92II	CATG	7 cut(s)	431, 679, 734, 771, 892, 1285, 1432
HspAI	GCGC	4 cut(s)	837, 839, 1087, 1286
KasI	GGCGCC	1 cut(s)	1285
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	100, 306, 1397
LmnI	GCTCC	1 cut(s)	983
Lsp1109I	GCAGC	4 cut(s)	451, 999, 1021, 1154
LweI	GCATC	3 cut(s)	111, 572, 1201
MaeI	CTAG	4 cut(s)	468, 549, 987, 1495
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	5 cut(s)	32, 65, 645, 1054, 1424
MalI	GATC	3 cut(s)	102, 308, 1399
MboI	GATC	3 cut(s)	100, 306, 1397
MfeI	CAATTG	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	4 cut(s)	369, 723, 752, 1473
Mly113I	GGCGCC	1 cut(s)	1286
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	2 cut(s)	189, 961
Mph1103I	ATGCAT	1 cut(s)	1216
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	5 cut(s)	203, 855, 1073, 1217, 1388
MspA1I	CMGCKG	2 cut(s)	1012, 1163
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	6 cut(s)	59, 149, 242, 255, 280, 708
MspR9I	CCNGG	2 cut(s)	272, 281
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	1 cut(s)	967
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	839
MwoI	GCNNNNNNNGC	4 cut(s)	281, 1276, 1285, 1318
NarI	GGCGCC	1 cut(s)	1286
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	1281
NdeI	CATATG	1 cut(s)	1480
NdeII	GATC	3 cut(s)	100, 306, 1397
NheI	GCTAGC	1 cut(s)	986
NlaIII	CATG	7 cut(s)	431, 679, 734, 771, 892, 1285, 1432
NlaIV	GGNNCC	2 cut(s)	147, 1287
NmuCI	GTSAC	2 cut(s)	645, 1054
NsiI	ATGCAT	1 cut(s)	1216
PagI	TCATGA	1 cut(s)	427
PauI	GCGCGC	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	1192
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	967
PfeI	GAWTC	7 cut(s)	39, 72, 424, 577, 716, 737, 1379
PkrI	GCNGC	5 cut(s)	7, 466, 1011, 1014, 1144
PleI	GAGTC	1 cut(s)	652
PluTI	GGCGCC	1 cut(s)	1289
PpsI	GAGTC	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	1047
PshAI	GACNNNNGTC	1 cut(s)	1052
PsiI	TTATAA	1 cut(s)	1109
Psp124BI	GAGCTC	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	978
Psp5II	RGGWCCY	1 cut(s)	1047
Psp6I	CCWGG	1 cut(s)	270
PspEI	GGTNACC	2 cut(s)	32, 65
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	147, 1287
PspPI	GGNCC	5 cut(s)	268, 282, 342, 1047, 1136
PspPPI	RGGWCCY	1 cut(s)	1047
PstI	CTGCAG	1 cut(s)	1017
PteI	GCGCGC	1 cut(s)	837
PvuII	CAGCTG	2 cut(s)	1012, 1163
RsaI	GTAC	5 cut(s)	325, 434, 517, 921, 1493
RsaNI	GTAC	5 cut(s)	324, 433, 516, 920, 1492
SacI	GAGCTC	1 cut(s)	337
SaqAI	TTAA	5 cut(s)	203, 855, 1073, 1217, 1388
SatI	GCNGC	5 cut(s)	6, 465, 1010, 1013, 1143
Sau3AI	GATC	3 cut(s)	100, 306, 1397
Sau96I	GGNCC	5 cut(s)	268, 282, 342, 1047, 1136
ScaI	AGTACT	2 cut(s)	434, 517
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	2 cut(s)	272, 281
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	111, 572, 1201
SfcI	CTRYAG	1 cut(s)	1013
SfiI	GGCCNNNNNGGCC	1 cut(s)	281
SfoI	GGCGCC	1 cut(s)	1287
SinI	GGWCC	3 cut(s)	342, 1047, 1136
SmlI	CTYRAG	5 cut(s)	16, 110, 832, 854, 944
SmoI	CTYRAG	5 cut(s)	16, 110, 832, 854, 944
Sse9I	AATT	4 cut(s)	369, 723, 752, 1473
SseBI	AGGCCT	1 cut(s)	1192
SsiI	CCGC	2 cut(s)	1083, 1489
SspDI	GGCGCC	1 cut(s)	1285
SspI	AATATT	2 cut(s)	523, 691
SspMI	CTAG	4 cut(s)	468, 549, 987, 1495
SstI	GAGCTC	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	1192
StyD4I	CCNGG	2 cut(s)	270, 279
StyI	CCWWGG	4 cut(s)	176, 345, 1050, 1281
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	3 cut(s)	42, 99, 138
TasI	AATT	4 cut(s)	369, 723, 752, 1473
TatI	WGTACW	2 cut(s)	432, 515
TfiI	GAWTC	7 cut(s)	39, 72, 424, 577, 716, 737, 1379
Tru1I	TTAA	5 cut(s)	203, 855, 1073, 1217, 1388
Tru9I	TTAA	5 cut(s)	203, 855, 1073, 1217, 1388
TscAI	CASTG	2 cut(s)	316, 1063
TseFI	GTSAC	2 cut(s)	645, 1054
TseI	GCWGC	5 cut(s)	5, 464, 1009, 1012, 1142
Tsp45I	GTSAC	2 cut(s)	645, 1054
TspDTI	ATGAA	8 cut(s)	416, 552, 1092, 1331, 1350, 1354, 1441, 1467
TspGWI	ACGGA	2 cut(s)	784, 907
TspRI	CASTG	2 cut(s)	316, 1063
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	3 cut(s)	342, 1047, 1136
XapI	RAATTY	1 cut(s)	369
XmiI	GTMKAC	4 cut(s)	156, 238, 874, 1416
XspI	CTAG	4 cut(s)	468, 549, 987, 1495
ZrmI	AGTACT	2 cut(s)	434, 517
Zsp2I	ATGCAT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.