MD01G1092200.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20690900 .. 20692017
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1092200.v1.1.491

Sequence Viewer

Length: 636 bp
ATGAGCAGTAGCAGCATCAGCAGCAGCATGACAACTGAAGAAGGAGATGCAGTGCATGTGAATCTGATCCTACTACCTGGGTTCAGATTCTACCCAACTGATGAGCTGCTGGTCAGCTACTACTTGAAGAACAAGGTACAGGGCACAGACTCCCATTTCCGTCACCTCATCCCTGAAATCGATGTCTGCAAGTACGAGCCCTGCGATCTTCCTGCATTCTTCCCAGAAGATCAAGAGAAGGAGTGGTACTTCTTCAGCCGGCCCGACTACAAGTACATCAACAGCACTCGCTGCAACCGGGCCACGGAGCAAGGCTTTTACAAGATCACAGGGAAGGAGCGTGAGATCAGGGCTGAAGAATCCAAAGCTGTGATTGGGAAGAAGAGGATTCTGACCTTTTACGAAGGTCGTGCGCCGAAAGCAAAGAAGACCGATTGGATAGTCCATGAGTATTATCTCACAGAAACCCAGGTGGGTTCTAAACCCACCAAGCAGATGGACTTTGTCCTCTGCCGCCTGAAGAACAATTCAGCTAGTTATAAGAAGCCGAAGGGTGATCCAATCCGGGGCGAATTAGCTGATTCGGGAGCGAATTCTGAAGACGATCAAGCTGTTGGATTAGCCAAGTTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

212

Amino Acids

24.15

Weight (kDa)

6.91

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 153 1.6e-37 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AciI CCGC 1 cut(s) 514
AclWI GGATC 2 cut(s) 61, 551
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 5 cut(s) 57, 238, 375, 539, 618
AfaI GTAC 4 cut(s) 138, 194, 248, 275
AfiI CCNNNNNNNGG 2 cut(s) 304, 566
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 2 cut(s) 76, 468
AluBI AGCT 7 cut(s) 106, 117, 368, 533, 578, 611, 632
AluI AGCT 7 cut(s) 106, 117, 368, 533, 578, 611, 632
AlwI GGATC 2 cut(s) 61, 551
AoxI GGCC 2 cut(s) 260, 300
ApeKI GCWGC 5 cut(s) 12, 21, 24, 106, 291
ApoI RAATTY 1 cut(s) 592
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 261, 300
AsuC2I CCSGG 2 cut(s) 299, 566
AsuHPI GGTGA 2 cut(s) 155, 566
BaeGI GKGCMC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 2 cut(s) 434, 606
BbvI GCAGC 5 cut(s) 24, 33, 36, 93, 278
BccI CCATC 1 cut(s) 490
BcgI CGANNNNNNTGC 4 cut(s) 194, 228, 392, 426
BciT130I CCWGG 2 cut(s) 78, 470
BcnI CCSGG 2 cut(s) 299, 566
BfaI CTAG 1 cut(s) 534
BisI GCNGC 6 cut(s) 13, 22, 25, 107, 292, 514
BlsI GCNGC 6 cut(s) 14, 23, 26, 108, 293, 515
Bme1390I CCNGG 4 cut(s) 78, 299, 470, 566
BmgT120I GGNCC 2 cut(s) 261, 300
BmrFI CCNGG 4 cut(s) 78, 299, 470, 566
BmsI GCATC 2 cut(s) 24, 37
BpiI GAAGAC 2 cut(s) 434, 606
BpuMI CCSGG 2 cut(s) 299, 566
Bsa29I ATCGAT 1 cut(s) 180
BsaJI CCNNGG 4 cut(s) 77, 303, 468, 565
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 566
Bse118I RCCGGY 1 cut(s) 258
BseBI CCWGG 2 cut(s) 78, 470
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 77, 303, 468, 565
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 304, 566
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 5 cut(s) 24, 33, 36, 93, 278
BshFI GGCC 2 cut(s) 262, 302
BshVI ATCGAT 1 cut(s) 180
BsiSI CCGG 3 cut(s) 259, 298, 565
BslI CCNNNNNNNGG 2 cut(s) 304, 566
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 2 cut(s) 262, 302
Bsp1286I GDGCHC 2 cut(s) 146, 201
Bsp143I GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
BspACI CCGC 1 cut(s) 514
BspANI GGCC 2 cut(s) 262, 302
BspDI ATCGAT 1 cut(s) 180
BspPI GGATC 2 cut(s) 61, 551
BsrFI RCCGGY 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 4 cut(s) 77, 303, 468, 565
BssMI GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
Bst2UI CCWGG 2 cut(s) 78, 470
Bst6I CTCTTC 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 260
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 7 cut(s) 69, 208, 232, 327, 348, 559, 607
BstMBI GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
BstMWI GCNNNNNNNGC 6 cut(s) 12, 18, 21, 291, 419, 629
BstNI CCWGG 2 cut(s) 78, 470
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 4 cut(s) 76, 297, 468, 564
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 5 cut(s) 24, 33, 36, 93, 278
BstV2I GAAGAC 2 cut(s) 434, 606
BstXI CCANNNNNNTGG 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 2 cut(s) 262, 302
BsuTUI ATCGAT 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 261, 300
ClaI ATCGAT 1 cut(s) 180
Csp6I GTAC 4 cut(s) 137, 193, 247, 274
CviAII CATG 3 cut(s) 28, 56, 446
CviQI GTAC 4 cut(s) 137, 193, 247, 274
DpnI GATC 7 cut(s) 68, 207, 231, 326, 347, 558, 606
DpnII GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 201
Eco57I CTGAAG 5 cut(s) 57, 238, 375, 539, 618
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 76, 468
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 3 cut(s) 31, 59, 449
FaiI YATR 4 cut(s) 29, 57, 447, 540
FatI CATG 3 cut(s) 27, 55, 445
Fnu4HI GCNGC 6 cut(s) 13, 22, 25, 107, 292, 514
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 6 cut(s) 13, 22, 25, 107, 292, 514
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 414
GluI GCNGC 6 cut(s) 13, 22, 25, 107, 292, 514
HaeIII GGCC 2 cut(s) 262, 302
HapII CCGG 3 cut(s) 259, 298, 565
HhaI GCGC 1 cut(s) 415
Hin1II CATG 3 cut(s) 31, 59, 449
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 6 cut(s) 61, 87, 149, 359, 388, 581
HpaII CCGG 3 cut(s) 259, 298, 565
HphI GGTGA 2 cut(s) 155, 566
Hpy188I TCNGA 4 cut(s) 66, 86, 393, 598
Hpy188III TCNNGA 2 cut(s) 233, 585
HpyAV CCTTC 5 cut(s) 35, 232, 328, 398, 544
HpyCH4V TGCA 5 cut(s) 50, 55, 189, 215, 294
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 18, 21, 291, 419, 629
Hsp92II CATG 3 cut(s) 31, 59, 449
HspAI GCGC 1 cut(s) 413
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Kzo9I GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
LmnI GCTCC 3 cut(s) 307, 337, 587
Lsp1109I GCAGC 5 cut(s) 24, 33, 36, 93, 278
LweI GCATC 2 cut(s) 24, 37
MaeI CTAG 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 161
MalI GATC 7 cut(s) 68, 207, 231, 326, 347, 558, 606
MboI GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
MhlI GDGCHC 2 cut(s) 146, 201
MluCI AATT 3 cut(s) 526, 572, 592
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 595
MnlI CCTC 3 cut(s) 176, 378, 518
MroNI GCCGGC 1 cut(s) 258
MspI CCGG 3 cut(s) 259, 298, 565
MspR9I CCNGG 4 cut(s) 78, 299, 470, 566
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 2 cut(s) 78, 470
MwoI GCNNNNNNNGC 6 cut(s) 12, 18, 21, 291, 419, 629
NaeI GCCGGC 1 cut(s) 260
NciI CCSGG 2 cut(s) 299, 566
NdeII GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 3 cut(s) 31, 59, 449
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 215
PdiI GCCGGC 1 cut(s) 260
PfeI GAWTC 5 cut(s) 61, 87, 359, 388, 581
PflFI GACNNNGTC 1 cut(s) 503
PkrI GCNGC 6 cut(s) 14, 23, 26, 108, 293, 515
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 76, 468
PspGI CCWGG 2 cut(s) 76, 468
PspPI GGNCC 2 cut(s) 261, 300
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 4 cut(s) 138, 194, 248, 275
RsaNI GTAC 4 cut(s) 137, 193, 247, 274
SatI GCNGC 6 cut(s) 13, 22, 25, 107, 292, 514
Sau3AI GATC 7 cut(s) 66, 205, 229, 324, 345, 556, 604
Sau96I GGNCC 2 cut(s) 261, 300
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 78, 299, 470, 566
SduI GDGCHC 2 cut(s) 146, 201
SfaNI GCATC 2 cut(s) 24, 37
Sse9I AATT 3 cut(s) 526, 572, 592
SsiI CCGC 1 cut(s) 514
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 4 cut(s) 76, 297, 468, 564
TaqI TCGA 1 cut(s) 180
TaqII GACCGA 1 cut(s) 446
TasI AATT 3 cut(s) 526, 572, 592
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 5 cut(s) 61, 87, 359, 388, 581
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 5 cut(s) 12, 21, 24, 106, 291
Tsp45I GTSAC 1 cut(s) 161
TspGWI ACGGA 2 cut(s) 149, 320
TspRI CASTG 1 cut(s) 57
Tth111I GACNNNGTC 1 cut(s) 503
XapI RAATTY 1 cut(s) 592
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.