MD01G1093800.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20859271 .. 20860399
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1093800.v1.1.491

Sequence Viewer

Length: 561 bp
ATGGGAACATTGGGAAGCAACAGAAAAACAAGAGGAGGAGGGGCATCAGACCCAGTAGGGTTCAGATTCTACCCCACTCCGGAGGAACTGGTGGACCATTACTTGAAGCTCAAGAAACAGGACAAAGATTTCAAATCTGATCACATTGCGGAATTCGATGTCTGCAACTTCGACCCTTGGGATTTGGCTGCTCGCATTCCATCCGACGATATGGTGTGGTACTTCTTCAGCCGAAAGGATTACAAGTACATCAACAGCAACCGGTCCAACCGAACCACACCAGGAGGCCACTGGAAAATCACAGGCAAGGAGCGTGCGATCAAGGCTCGGCGGTCCAAAGCTCTCATTGGGAAGAAGAGGACCTTGACATTCTACCAACGTTGTCAGCCTAAACCCAAAAAAACCGACTGGGTCATGCACGAGTTCTATCTCCTTGATAGTGAAGCCATCTCTAATCCTAAGCTGCATCAGAAGGATTTTGTTCTCTGTCGCATGAAGAAAAATTCCGATATGGAGGATACCTCAATCGGTGAAGTTGAACTTGGCAGCTACAGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

187

Amino Acids

21.7

Weight (kDa)

9.48

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 143 1.8e-38 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 2 cut(s) 149, 331
AclI AACGTT 1 cut(s) 379
AcsI RAATTY 2 cut(s) 152, 502
AcuI CTGAAG 1 cut(s) 211
AfaI GTAC 2 cut(s) 221, 248
AfiI CCNNNNNNNGG 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 106, 133, 539
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 4 cut(s) 109, 341, 463, 549
AluI AGCT 4 cut(s) 109, 341, 463, 549
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 3 cut(s) 188, 463, 546
ApoI RAATTY 2 cut(s) 152, 502
AsiGI ACCGGT 1 cut(s) 261
AspS9I GGNCC 4 cut(s) 94, 264, 333, 360
AsuHPI GGTGA 1 cut(s) 542
AvaII GGWCC 4 cut(s) 94, 264, 333, 360
BauI CACGAG 1 cut(s) 419
BbvI GCAGC 2 cut(s) 175, 450
BccI CCATC 2 cut(s) 208, 455
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 550
BfuI GTATCC 1 cut(s) 511
BisI GCNGC 3 cut(s) 189, 464, 547
BlsI GCNGC 3 cut(s) 190, 465, 548
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 4 cut(s) 94, 264, 333, 360
BmgT120I GGNCC 4 cut(s) 94, 264, 333, 360
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 2 cut(s) 47, 418
BmsI GCATC 2 cut(s) 53, 475
BmuI ACTGGG 2 cut(s) 47, 418
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bpu10I CCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 176
BsaWI WCCGGW 2 cut(s) 79, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 4 cut(s) 53, 93, 296, 413
Bse3DI GCAATG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 79
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 4 cut(s) 53, 93, 296, 413
BseRI GAGGAG 2 cut(s) 48, 51
BseXI GCAGC 2 cut(s) 175, 450
BshFI GGCC 1 cut(s) 288
BshTI ACCGGT 1 cut(s) 261
BsiSI CCGG 2 cut(s) 80, 262
BslI CCNNNNNNNGG 1 cut(s) 79
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 288
Bsp13I TCCGGA 1 cut(s) 79
Bsp143I GATC 2 cut(s) 139, 318
BspACI CCGC 2 cut(s) 149, 331
BspANI GGCC 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 4 cut(s) 53, 93, 296, 413
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 2 cut(s) 139, 318
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 193, 315
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 2 cut(s) 142, 321
BstMBI GATC 2 cut(s) 139, 318
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 175, 450
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 193, 315
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 4 cut(s) 94, 264, 333, 360
Csp6I GTAC 2 cut(s) 220, 247
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 2 cut(s) 415, 493
CviQI GTAC 2 cut(s) 220, 247
DdeI CTNAG 1 cut(s) 459
DpnI GATC 2 cut(s) 141, 320
DpnII GATC 2 cut(s) 139, 318
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 4 cut(s) 94, 264, 333, 360
Eco57I CTGAAG 1 cut(s) 211
EcoO109I RGGNCCY 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 418, 496
FaiI YATR 4 cut(s) 212, 416, 494, 512
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 525, 557
FatI CATG 2 cut(s) 414, 492
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 189, 464, 547
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 189, 464, 547
GluI GCNGC 3 cut(s) 189, 464, 547
HaeIII GGCC 1 cut(s) 288
HapII CCGG 2 cut(s) 80, 262
Hin1II CATG 2 cut(s) 418, 496
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 80, 262
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 6 cut(s) 49, 65, 139, 205, 471, 508
Hpy188III TCNNGA 2 cut(s) 80, 112
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 165, 418, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 418, 496
Kpn2I TCCGGA 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 139, 318
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 2 cut(s) 175, 450
LweI GCATC 2 cut(s) 53, 475
MaeII ACGT 1 cut(s) 379
MalI GATC 2 cut(s) 141, 320
MboI GATC 2 cut(s) 139, 318
MboII GAAGA 4 cut(s) 217, 364, 367, 508
MluCI AATT 2 cut(s) 152, 502
MmeI TCCRAC 2 cut(s) 228, 291
MnlI CCTC 8 cut(s) 26, 29, 32, 76, 278, 351, 508, 532
MroI TCCGGA 1 cut(s) 79
MspI CCGG 2 cut(s) 80, 262
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 2 cut(s) 139, 318
NlaIII CATG 2 cut(s) 418, 496
NmeAIII GCCGAG 1 cut(s) 307
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 66
PflFI GACNNNGTC 1 cut(s) 410
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 3 cut(s) 190, 465, 548
PpuMI RGGWCCY 1 cut(s) 360
Psp1406I AACGTT 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 4 cut(s) 94, 264, 333, 360
PspPPI RGGWCCY 1 cut(s) 360
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 2 cut(s) 221, 248
RsaNI GTAC 2 cut(s) 220, 247
SatI GCNGC 3 cut(s) 189, 464, 547
Sau3AI GATC 2 cut(s) 139, 318
Sau96I GGNCC 4 cut(s) 94, 264, 333, 360
ScrFI CCNGG 1 cut(s) 282
SetI ASST 8 cut(s) 111, 343, 365, 382, 465, 524, 551, 560
SfaNI GCATC 2 cut(s) 53, 475
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 4 cut(s) 94, 264, 333, 360
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 152, 502
SsiI CCGC 2 cut(s) 149, 331
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 382
TaqI TCGA 2 cut(s) 156, 171
TasI AATT 2 cut(s) 152, 502
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 1 cut(s) 296
TseI GCWGC 3 cut(s) 188, 463, 546
TspDTI ATGAA 1 cut(s) 509
TspRI CASTG 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 410
VpaK11BI GGWCC 4 cut(s) 94, 264, 333, 360
XapI RAATTY 2 cut(s) 152, 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.