MD01G1093700.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20852376 .. 20853844
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1093700.v1.1.491

Sequence Viewer

Length: 708 bp
ATGAGCAGCAGCAGCAGCAGCATCACAACTGAAGGAGGAGATGCAGTGCATGCGAATGTGATCCTACTACCTTCGGTCAGATTCAAACCCACTGATGAGTTGCTGGTCAGCTACTACTTGAGGAGCAAGATACAGGGCACCGACTCCCTCTTCCGCCACACCATCCCTGAAATCGATGTCTGCAAGTACGAGCCCTGCGATCTTCCTGCATTCTTCCCAGAAGATCATGAGAAGGAGTGGTTCTTCTTCAGCCGGCCCGACTACAAGTACATCAACAGCACTCGCTGCAACCGGGCCACGGATCAAGGCTTTTACAAGATCACAGGGAAGGAGCGTGAGATCAGGGCTGAAGAATCCAAAGCTGTGATTGGGAAGAAGAGGATTCTGACCTTTTACGAAGGTCGTGTGCCGAAATCAAAGAAGACCGATTGGGTAGTCCATGAGTATTATCTCACAAAAATTGAGGTGGGTTCTAGACCCACCAAGCAGATGGACTTTGTCCTCTGGCGCCTGAAGAACAAGTCAGCTAGTTATAAGAAGCCGAAAGATGATCCAATCCACGGCGAATTAGCTGATTCAGGTGCTAACTCGGAAGATGATCAAGCTGCTGTGAGTGATGTGATTGCAGAGCCAGTGGAACATCTGGGATACTTCTTTGATAACCTTCAGATTGAAACTCTGATCTCTAGTAAGTATTGCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

236

Amino Acids

27.02

Weight (kDa)

6.11

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 151 3.9e-35 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 137, 507
AciI CCGC 1 cut(s) 154
AclWI GGATC 3 cut(s) 55, 309, 545
AcuI CTGAAG 5 cut(s) 51, 232, 369, 533, 650
AcyI GRCGYC 1 cut(s) 508
AfaI GTAC 2 cut(s) 188, 269
AfiI CCNNNNNNNGG 2 cut(s) 298, 560
AgsI TTSAA 2 cut(s) 85, 674
AluBI AGCT 5 cut(s) 111, 362, 527, 572, 605
AluI AGCT 5 cut(s) 111, 362, 527, 572, 605
AlwI GGATC 3 cut(s) 55, 309, 545
AoxI GGCC 2 cut(s) 254, 294
ApeKI GCWGC 7 cut(s) 6, 9, 12, 15, 18, 285, 605
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 2 cut(s) 255, 294
AsuC2I CCSGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 2 cut(s) 137, 507
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 428
BbvI GCAGC 7 cut(s) 18, 21, 24, 27, 30, 272, 592
BccI CCATC 2 cut(s) 170, 484
BceAI ACGGC 1 cut(s) 577
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciVI GTATCC 1 cut(s) 641
BclI TGATCA 1 cut(s) 598
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 3 cut(s) 474, 528, 687
BfoI RGCGCY 1 cut(s) 511
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 7 cut(s) 7, 10, 13, 16, 19, 286, 606
BlsI GCNGC 7 cut(s) 8, 11, 14, 17, 20, 287, 607
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 255, 294
BmiI GGNNCC 2 cut(s) 139, 509
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 30, 31
BpiI GAAGAC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 508
BsaJI CCNNGG 2 cut(s) 297, 559
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 560
Bse118I RCCGGY 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 632
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 297, 559
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 298, 560
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 2 cut(s) 51, 136
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 7 cut(s) 18, 21, 24, 27, 30, 272, 592
BshFI GGCC 2 cut(s) 256, 296
BshNI GGYRCC 2 cut(s) 137, 507
BshVI ATCGAT 1 cut(s) 174
BsiSI CCGG 2 cut(s) 253, 292
BslI CCNNNNNNNGG 2 cut(s) 298, 560
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 2 cut(s) 256, 296
Bsp1286I GDGCHC 2 cut(s) 140, 195
Bsp143I GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 256, 296
BspDI ATCGAT 1 cut(s) 174
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 139, 509
BspPI GGATC 3 cut(s) 55, 309, 545
BspT107I GGYRCC 2 cut(s) 137, 507
BsrFI RCCGGY 1 cut(s) 252
BsrI ACTGG 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 297, 559
BssMI GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
BssNI GRCGYC 1 cut(s) 508
Bst6I CTCTTC 2 cut(s) 155, 371
BstACI GRCGYC 1 cut(s) 508
BstAPI GCANNNNNTGC 2 cut(s) 50, 285
BstC8I GCNNGC 2 cut(s) 51, 254
BstDSI CCRYGG 2 cut(s) 297, 559
BstF5I GGATG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 9 cut(s) 63, 202, 226, 304, 321, 342, 553, 601, 684
BstMBI GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
BstMWI GCNNNNNNNGC 5 cut(s) 12, 15, 18, 50, 285
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 140
BstV1I GCAGC 7 cut(s) 18, 21, 24, 27, 30, 272, 592
BstV2I GAAGAC 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 490
Bsu15I ATCGAT 1 cut(s) 174
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 2 cut(s) 256, 296
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 2 cut(s) 297, 559
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 3 cut(s) 51, 90, 639
Cac8I GCNNGC 2 cut(s) 51, 254
CciI TCATGA 1 cut(s) 226
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 255, 294
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 2 cut(s) 187, 268
CviAII CATG 3 cut(s) 50, 227, 440
CviQI GTAC 2 cut(s) 187, 268
DinI GGCGCC 1 cut(s) 509
DpnI GATC 9 cut(s) 62, 201, 225, 303, 320, 341, 552, 600, 683
DpnII GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
Eam1104I CTCTTC 2 cut(s) 155, 371
EarI CTCTTC 2 cut(s) 155, 371
EciI GGCGGA 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 195
Eco57I CTGAAG 5 cut(s) 51, 232, 369, 533, 650
EcoT38I GRGCYC 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 509
EheI GGCGCC 1 cut(s) 509
FaeI CATG 3 cut(s) 53, 230, 443
FaiI YATR 4 cut(s) 51, 228, 441, 534
FalI AAGNNNNNCTT 1 cut(s) 683
FatI CATG 3 cut(s) 49, 226, 439
FbaI TGATCA 1 cut(s) 598
Fnu4HI GCNGC 7 cut(s) 7, 10, 13, 16, 19, 286, 606
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 7 cut(s) 7, 10, 13, 16, 19, 286, 606
FspBI CTAG 3 cut(s) 474, 528, 687
GlaI GCGC 1 cut(s) 509
GluI GCNGC 7 cut(s) 7, 10, 13, 16, 19, 286, 606
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 2 cut(s) 256, 296
HapII CCGG 2 cut(s) 253, 292
HhaI GCGC 1 cut(s) 510
Hin1I GRCGYC 1 cut(s) 508
Hin1II CATG 3 cut(s) 53, 230, 443
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 5 cut(s) 81, 143, 353, 382, 575
HpaII CCGG 2 cut(s) 253, 292
Hpy188I TCNGA 5 cut(s) 80, 387, 592, 669, 681
Hpy188III TCNNGA 2 cut(s) 227, 474
HpyAV CCTTC 6 cut(s) 26, 81, 226, 322, 392, 674
HpyCH4V TGCA 6 cut(s) 44, 49, 183, 209, 288, 626
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 15, 18, 50, 285
Hsp92I GRCGYC 1 cut(s) 508
Hsp92II CATG 3 cut(s) 53, 230, 443
HspAI GCGC 1 cut(s) 508
KasI GGCGCC 1 cut(s) 507
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
LmnI GCTCC 2 cut(s) 123, 331
Lsp1109I GCAGC 7 cut(s) 18, 21, 24, 27, 30, 272, 592
LweI GCATC 2 cut(s) 30, 31
MaeI CTAG 3 cut(s) 474, 528, 687
MalI GATC 9 cut(s) 62, 201, 225, 303, 320, 341, 552, 600, 683
MboI GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
MhlI GDGCHC 2 cut(s) 140, 195
MluCI AATT 3 cut(s) 459, 566, 703
Mly113I GGCGCC 1 cut(s) 508
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 6 cut(s) 29, 114, 158, 372, 457, 512
MroNI GCCGGC 1 cut(s) 252
MseI TTAA 2 cut(s) 702, 706
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 2 cut(s) 253, 292
MspR9I CCNGG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 5 cut(s) 12, 15, 18, 50, 285
NaeI GCCGGC 1 cut(s) 254
NarI GGCGCC 1 cut(s) 508
NciI CCSGG 1 cut(s) 293
NdeII GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 53, 230, 443
NlaIV GGNNCC 2 cut(s) 139, 509
NspI RCATGY 1 cut(s) 53
PacI TTAATTAA 1 cut(s) 706
PaeI GCATGC 1 cut(s) 53
PagI TCATGA 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 4 cut(s) 81, 353, 382, 575
PflFI GACNNNGTC 1 cut(s) 497
PkrI GCNGC 7 cut(s) 8, 11, 14, 17, 20, 287, 607
PleI GAGTC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 137
PsiI TTATAA 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 139, 509
PspPI GGNCC 2 cut(s) 255, 294
PsyI GACNNNGTC 1 cut(s) 497
RsaI GTAC 2 cut(s) 188, 269
RsaNI GTAC 2 cut(s) 187, 268
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 2 cut(s) 702, 706
SatI GCNGC 7 cut(s) 7, 10, 13, 16, 19, 286, 606
Sau3AI GATC 9 cut(s) 60, 199, 223, 301, 318, 339, 550, 598, 681
Sau96I GGNCC 2 cut(s) 255, 294
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 2 cut(s) 140, 195
SfaNI GCATC 2 cut(s) 30, 31
SfoI GGCGCC 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SphI GCATGC 1 cut(s) 53
Sse9I AATT 3 cut(s) 459, 566, 703
SsiI CCGC 1 cut(s) 154
SspDI GGCGCC 1 cut(s) 507
SspMI CTAG 3 cut(s) 474, 528, 687
StyD4I CCNGG 1 cut(s) 291
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 2 cut(s) 64, 440
TasI AATT 3 cut(s) 459, 566, 703
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 4 cut(s) 81, 353, 382, 575
Tru1I TTAA 2 cut(s) 702, 706
Tru9I TTAA 2 cut(s) 702, 706
TscAI CASTG 3 cut(s) 51, 97, 639
TseI GCWGC 7 cut(s) 6, 9, 12, 15, 18, 285, 605
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 51, 97, 639
Tth111I GACNNNGTC 1 cut(s) 497
XbaI TCTAGA 1 cut(s) 473
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 3 cut(s) 474, 528, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.