Rw1G005400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
10396930 .. 10398275
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005400.1

Sequence Viewer

Length: 753 bp
ATGTTGGGGACTGATACAGAGGCTCAGGACATGGAGCGGTTCTTCTTCACCAGAAAGTATTACGAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGCAAAGAGCGTGGGAACAAGAGGACATTGACTTTTTACCAGGATCGTGTGCCGAAACCGAACGAGACCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAAATGGAGTTATTTCGTATCTGAAGCAGGCCCAGGGCGACTTTGTTATCTGTCACTTGATGATTAAATCAGATAAGAAGGATTCTTCGCGCAGTAACGAAGGAGAACCCGGTAACGCAGGTGTGTCGAATTGTGAAAATCAAGCTGCTGATGAAATGGATCAAGAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGGTGACCGCTGCTCTTCAGCACTGTGGTCACGGGCATCCCACGATCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAGTTGGAATCACCATTTGGAGATGGTGATTCTTGTTTTCTAGACGGGAATGAAGTTTCAATCTGTGATGAATATGAGGTTTTGTATGATGTGTCTCCACAGGTGAGTGATCCGCCGGAAAAAAACTCTGGATTCACTCTTACGTCACCTGAGCAACAAGATTACCGCCCCTCCATACTGCACTCACCAATATACATAAAGCTGGGAAATGTTTCAGATGCCAATCTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

250

Amino Acids

28.38

Weight (kDa)

4.76

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 73 8.8e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 37
AccII CGCG 1 cut(s) 313
AciI CCGC 4 cut(s) 37, 436, 632, 685
AclWI GGATC 3 cut(s) 174, 390, 623
AcuI CTGAAG 2 cut(s) 266, 429
AfaI GTAC 2 cut(s) 68, 212
AfiI CCNNNNNNNGG 2 cut(s) 227, 475
AgsI TTSAA 1 cut(s) 579
AjnI CCWGG 3 cut(s) 162, 220, 255
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 5 cut(s) 78, 195, 368, 482, 721
AluI AGCT 5 cut(s) 78, 195, 368, 482, 721
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 2 cut(s) 182, 618
AlwI GGATC 3 cut(s) 174, 390, 623
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 368, 438
Asp700I GAANNNNTTC 2 cut(s) 483, 730
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 7 cut(s) 40, 443, 522, 557, 634, 657, 696
AxyI CCTNAGG 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
Bbv12I GWGCWC 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 355, 425
BccI CCATC 2 cut(s) 420, 536
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 3 cut(s) 164, 222, 257
BciVI GTATCC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 182, 618
BfaI CTAG 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 2 cut(s) 369, 439
BlsI GCNGC 2 cut(s) 370, 440
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 4 cut(s) 164, 222, 257, 333
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 4 cut(s) 164, 222, 257, 333
BmsI GCATC 2 cut(s) 473, 727
Bpu10I CCTNAGC 3 cut(s) 24, 420, 669
BpuMI CCSGG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 741
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 255, 256
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 475
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 741
BseBI CCWGG 3 cut(s) 164, 222, 257
BseDI CCNNGG 2 cut(s) 255, 256
BseGI GGATG 1 cut(s) 464
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 2 cut(s) 227, 475
BseMII CTCAG 4 cut(s) 38, 434, 440, 660
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 2 cut(s) 355, 425
BseYI CCCAGC 2 cut(s) 195, 721
BsgI GTGCAG 1 cut(s) 683
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 333, 635
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 227, 475
BsmAI GTCTC 2 cut(s) 182, 618
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 98
Bsp143I GATC 4 cut(s) 166, 382, 472, 628
BspACI CCGC 4 cut(s) 37, 436, 632, 685
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 4 cut(s) 37, 433, 439, 661
BspFNI CGCG 1 cut(s) 313
BspHI TCATGA 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 3 cut(s) 174, 390, 623
BspQI GCTCTTC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 255, 256
BssMI GATC 4 cut(s) 166, 382, 472, 628
Bst2UI CCWGG 3 cut(s) 164, 222, 257
Bst4CI ACNGT 1 cut(s) 453
Bst6I CTCTTC 2 cut(s) 388, 448
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 4 cut(s) 24, 420, 426, 669
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 1 cut(s) 464
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 4 cut(s) 169, 385, 475, 631
BstMAI GTCTC 2 cut(s) 182, 618
BstMBI GATC 4 cut(s) 166, 382, 472, 628
BstNI CCWGG 3 cut(s) 164, 222, 257
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 4 cut(s) 162, 220, 255, 331
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 355, 425
Bsu36I CCTNAGG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 449
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 252
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 67, 211
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 2 cut(s) 31, 206
CviJI RGCY 8 cut(s) 23, 78, 195, 254, 368, 424, 482, 721
CviKI_1 RGCY 8 cut(s) 23, 78, 195, 254, 368, 424, 482, 721
CviQI GTAC 2 cut(s) 67, 211
DdeI CTNAG 4 cut(s) 24, 420, 426, 669
DpnI GATC 4 cut(s) 168, 384, 474, 630
DpnII GATC 4 cut(s) 166, 382, 472, 628
Eam1104I CTCTTC 2 cut(s) 388, 448
EarI CTCTTC 2 cut(s) 388, 448
EciI GGCGGA 1 cut(s) 621
Eco31I GGTCTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 266, 429
Eco81I CCTNAGG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 162, 220, 255
FaeI CATG 2 cut(s) 34, 209
FaiI YATR 7 cut(s) 32, 207, 594, 606, 695, 712, 716
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 30, 205
Fnu4HI GCNGC 2 cut(s) 369, 439
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 369, 439
FspBI CTAG 1 cut(s) 560
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 369, 439
GsaI CCCAGC 2 cut(s) 199, 725
HaeIII GGCC 1 cut(s) 254
HapII CCGG 2 cut(s) 333, 635
HhaI GCGC 1 cut(s) 315
Hin1II CATG 2 cut(s) 34, 209
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 5 cut(s) 88, 305, 527, 548, 651
HpaII CCGG 2 cut(s) 333, 635
HphI GGTGA 7 cut(s) 40, 443, 522, 557, 634, 657, 696
Hpy188I TCNGA 4 cut(s) 93, 246, 295, 736
Hpy188III TCNNGA 6 cut(s) 26, 206, 386, 476, 560, 648
HpyAV CCTTC 3 cut(s) 97, 295, 317
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4IV ACGT 1 cut(s) 662
HpyCH4V TGCA 2 cut(s) 490, 700
HpyF3I CTNAG 4 cut(s) 24, 420, 426, 669
HpySE526I ACGT 1 cut(s) 662
Hsp92II CATG 2 cut(s) 34, 209
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 4 cut(s) 166, 382, 472, 628
LguI GCTCTTC 1 cut(s) 448
LmnI GCTCC 2 cut(s) 34, 93
Lsp1109I GCAGC 2 cut(s) 355, 425
LweI GCATC 2 cut(s) 473, 727
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 662
MaeIII GTNAC 6 cut(s) 275, 317, 335, 431, 456, 663
MalI GATC 4 cut(s) 168, 384, 474, 630
MbiI CCGCTC 1 cut(s) 37
MboI GATC 4 cut(s) 166, 382, 472, 628
MboII GAAGA 7 cut(s) 34, 37, 112, 209, 300, 405, 435
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 8 cut(s) 13, 138, 382, 391, 429, 435, 589, 700
MroXI GAANNNNTTC 2 cut(s) 483, 730
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 2 cut(s) 195, 438
MspI CCGG 2 cut(s) 333, 635
MspR9I CCNGG 4 cut(s) 164, 222, 257, 333
MvaI CCWGG 3 cut(s) 164, 222, 257
MvnI CGCG 1 cut(s) 313
NciI CCSGG 1 cut(s) 333
NdeII GATC 4 cut(s) 166, 382, 472, 628
NlaIII CATG 2 cut(s) 34, 209
NmuCI GTSAC 4 cut(s) 275, 431, 456, 663
PagI TCATGA 1 cut(s) 205
PaqCI CACCTGC 1 cut(s) 332
PasI CCCWGGG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 448
PdmI GAANNNNTTC 2 cut(s) 483, 730
PfeI GAWTC 5 cut(s) 88, 305, 527, 548, 651
PflMI CCANNNNNTGG 1 cut(s) 475
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 2 cut(s) 370, 440
Psp6I CCWGG 3 cut(s) 162, 220, 255
PspEI GGTNACC 1 cut(s) 431
PspFI CCCAGC 2 cut(s) 195, 721
PspGI CCWGG 3 cut(s) 162, 220, 255
PspPI GGNCC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 2 cut(s) 68, 212
RsaNI GTAC 2 cut(s) 67, 211
SapI GCTCTTC 1 cut(s) 448
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 369, 439
Sau3AI GATC 4 cut(s) 166, 382, 472, 628
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 4 cut(s) 164, 222, 257, 333
SduI GDGCHC 1 cut(s) 98
SfaNI GCATC 2 cut(s) 473, 727
Sse9I AATT 1 cut(s) 352
SsiI CCGC 4 cut(s) 37, 436, 632, 685
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 4 cut(s) 162, 220, 255, 331
TaaI ACNGT 1 cut(s) 453
TaiI ACGT 1 cut(s) 665
TaqI TCGA 2 cut(s) 86, 350
TasI AATT 1 cut(s) 352
TatI WGTACW 2 cut(s) 66, 210
TfiI GAWTC 5 cut(s) 88, 305, 527, 548, 651
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 4 cut(s) 275, 431, 456, 663
TseI GCWGC 2 cut(s) 368, 438
Tsp45I GTSAC 4 cut(s) 275, 431, 456, 663
TspDTI ATGAA 4 cut(s) 194, 390, 585, 603
TspRI CASTG 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 475
XbaI TCTAGA 1 cut(s) 559
XmnI GAANNNNTTC 2 cut(s) 483, 730
XspI CTAG 1 cut(s) 560
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.