Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000062.1

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Reverse (-)

152970 .. 153275

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000062.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgctttgttttgtcgagactgagataatgaaactgggtgtgtcagtgttttcgctgataaggttggatgatgaggagtggttctacttcagtagatcggattacaagtccaacaagaaacagggccaggacaactgggccaccgagagagggatttggaaaattactgcgaaagagtgtgatatcagagctcgggggtccaaggctgtgataaggaggaagaggattttgactttctatattgggaaagttcggagtgggcagaacactagtttggagattcatgagtattacatatatacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

101

Amino Acids

12.03

Weight (kDa)

9.33

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	150
AhlI	ACTAGT	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	2 cut(s)	124, 138
AspS9I	GGNCC	3 cut(s)	124, 138, 198
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	124, 138, 198
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	2 cut(s)	44, 145
BmuI	ACTGGG	2 cut(s)	44, 145
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	39, 140
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	39, 140
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	126, 140
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	126, 140
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	126, 140
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	39, 140
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	126, 140
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	51
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	124, 138, 198
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	4 cut(s)	126, 140, 191, 206
CviKI_1	RGCY	4 cut(s)	126, 140, 191, 206
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	198
Eco53kI	GAGCTC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	287
FaiI	YATR	5 cut(s)	240, 285, 296, 298, 300
FatI	CATG	1 cut(s)	283
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	126, 140
Hin1II	CATG	1 cut(s)	287
HinfI	GANTC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	100, 188, 255
Hpy188III	TCNNGA	2 cut(s)	16, 284
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	287
Kzo9I	GATC	1 cut(s)	95
LpnPI	CCDG	5 cut(s)	20, 107, 113, 121, 140
MaeI	CTAG	1 cut(s)	270
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	45, 135
MnlI	CCTC	4 cut(s)	67, 143, 210, 216
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	199
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	3 cut(s)	124, 138, 198
SacI	GAGCTC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	3 cut(s)	124, 138, 198
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	3 cut(s)	65, 193, 305
SinI	GGWCC	1 cut(s)	198
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	1 cut(s)	162
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	1 cut(s)	15
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	2 cut(s)	44, 272
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	198
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.