MD01G1092600.v1.1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000197
Physical Location & Seq
Reverse (-)
20739262 .. 20740097
836 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1092600.v1.1.491

Sequence Viewer

Length: 702 bp
ATGAGCAGTGGCAGTAGCAGCAGCAGCATGACAACTGAAGAAGGCGATGCAGAGAATGTGAATGTGATCCTACTACCTGGGTTCAGATTCTACCCCACTGATGAGTTGCTGGTCAGCTACTACTTGAGGAACAAGATACAGGGCACCGACTCTCATTTCTGCCACCTCATCCCTGAAATGGATGTCTGCAAGTACGAGCCCTGCGATCTTCCTGGTAACCCCACTAATCTGTCTCACTTTTTCTTCACTACCCGTATCTTATTTCTAATGGATTCTGCTGTTGTTTATGTAAATTTACAATCTTGTTCGATTTTTCTGTTTTTTTCTTCCAGAATTGACTTGGGTTGGTTTCCACTTTTTGTTTACTGTTCATTCTTCCCAGAAGTCCATGAGAAGGAGTGGTTCTTCTTTACCCGGCTCGATTACAAGTACAACAACGGCACTCGCTGCAACCGGGCCACGGATCAAGGCTTTTACAAGATCACAGGAAAGGAGCGGGAGATCAGAGCTGAAGAATCCAAGGCTGTGGTTGGGAAGAAGAGGACCCTGACATTCTACGAAGGTCGTGTACCGAAATCAAAGAAGACCGATTGGATAGTCCATGAGTATTATCTCACAGAAACTGAGGTGGGTTCTAAACCCACCAAGCAGAAGGACTTTGTCCTCTGCCGCCTGAAGAACAAGTCAGCTAGTTATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

234

Amino Acids

27.15

Weight (kDa)

8.08

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 85 1e-13 No apical meristem (NAM) protein
NAM PF02365 129 - 205 4e-20 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 2 cut(s) 496, 670
AclWI GGATC 2 cut(s) 61, 471
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 3 cut(s) 57, 531, 695
AfaI GTAC 3 cut(s) 194, 431, 570
AfiI CCNNNNNNNGG 3 cut(s) 178, 394, 460
AjnI CCWGG 2 cut(s) 76, 211
AluBI AGCT 3 cut(s) 117, 509, 689
AluI AGCT 3 cut(s) 117, 509, 689
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 61, 471
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 18, 21, 24, 447
ApoI RAATTY 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 456, 543
AsuC2I CCSGG 2 cut(s) 415, 455
AvaII GGWCC 1 cut(s) 543
BaeGI GKGCMC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 201
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
BbsI GAAGAC 1 cut(s) 590
BbvI GCAGC 4 cut(s) 30, 33, 36, 434
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 2 cut(s) 78, 213
BcnI CCSGG 2 cut(s) 415, 455
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 690
BisI GCNGC 5 cut(s) 19, 22, 25, 448, 670
BlsI GCNGC 5 cut(s) 20, 23, 26, 449, 671
Bme1390I CCNGG 4 cut(s) 78, 213, 415, 455
Bme18I GGWCC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 456, 543
BmiI GGNNCC 2 cut(s) 145, 545
BmrFI CCNGG 4 cut(s) 78, 213, 415, 455
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 590
BpuEI CTTGAG 1 cut(s) 145
BpuMI CCSGG 2 cut(s) 415, 455
BsaJI CCNNGG 3 cut(s) 77, 459, 519
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 394, 460
BseBI CCWGG 2 cut(s) 78, 213
BseDI CCNNGG 3 cut(s) 77, 459, 519
BseGI GGATG 2 cut(s) 168, 187
BseLI CCNNNNNNNGG 3 cut(s) 178, 394, 460
BseMII CTCAG 1 cut(s) 615
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 4 cut(s) 30, 33, 36, 434
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 415, 454
BslI CCNNNNNNNGG 3 cut(s) 178, 394, 460
BsmAI GTCTC 1 cut(s) 237
BsnI GGCC 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 146, 201
Bsp143I GATC 5 cut(s) 66, 205, 463, 480, 501
BspACI CCGC 2 cut(s) 496, 670
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 145, 545
BspPI GGATC 2 cut(s) 61, 471
BspT107I GGYRCC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 496
BssECI CCNNGG 3 cut(s) 77, 459, 519
BssMI GATC 5 cut(s) 66, 205, 463, 480, 501
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 2 cut(s) 78, 213
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 624
BstDSI CCRYGG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 2 cut(s) 168, 187
BstKTI GATC 5 cut(s) 69, 208, 466, 483, 504
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 5 cut(s) 66, 205, 463, 480, 501
BstMWI GCNNNNNNNGC 3 cut(s) 18, 24, 447
BstNI CCWGG 2 cut(s) 78, 213
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 4 cut(s) 76, 211, 413, 453
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 4 cut(s) 30, 33, 36, 434
BstV2I GAAGAC 1 cut(s) 590
BstXI CCANNNNNNTGG 1 cut(s) 526
BsuRI GGCC 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 459
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 168, 187
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 13, 96
CaiI CAGNNNCTG 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 456, 543
Csp6I GTAC 3 cut(s) 193, 430, 569
CviAII CATG 3 cut(s) 28, 389, 602
CviJI RGCY 8 cut(s) 117, 199, 418, 458, 471, 509, 524, 689
CviKI_1 RGCY 8 cut(s) 117, 199, 418, 458, 471, 509, 524, 689
CviQI GTAC 3 cut(s) 193, 430, 569
DdeI CTNAG 1 cut(s) 624
DpnI GATC 5 cut(s) 68, 207, 465, 482, 503
DpnII GATC 5 cut(s) 66, 205, 463, 480, 501
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 543
Eco57I CTGAAG 3 cut(s) 57, 531, 695
Eco91I GGTNACC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 543
EcoO65I GGTNACC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 76, 211
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 3 cut(s) 31, 392, 605
FaiI YATR 5 cut(s) 29, 288, 390, 603, 696
FatI CATG 3 cut(s) 27, 388, 601
FauI CCCGC 1 cut(s) 489
Fnu4HI GCNGC 5 cut(s) 19, 22, 25, 448, 670
FokI GGATG 2 cut(s) 155, 194
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 5 cut(s) 19, 22, 25, 448, 670
FspBI CTAG 1 cut(s) 690
GluI GCNGC 5 cut(s) 19, 22, 25, 448, 670
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 415, 454
Hin1II CATG 3 cut(s) 31, 392, 605
HinfI GANTC 4 cut(s) 87, 149, 272, 515
HpaII CCGG 2 cut(s) 415, 454
Hpy166II GTNNAC 2 cut(s) 364, 569
Hpy188I TCNGA 2 cut(s) 86, 506
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 2 cut(s) 364, 569
HpyAV CCTTC 4 cut(s) 35, 388, 554, 646
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 50, 189, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 24, 447
HpyF3I CTNAG 1 cut(s) 624
Hsp92II CATG 3 cut(s) 31, 392, 605
Kzo9I GATC 5 cut(s) 66, 205, 463, 480, 501
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 4 cut(s) 30, 33, 36, 434
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 1 cut(s) 215
MalI GATC 5 cut(s) 68, 207, 465, 482, 503
MbiI CCGCTC 1 cut(s) 496
MboI GATC 5 cut(s) 66, 205, 463, 480, 501
MhlI GDGCHC 2 cut(s) 146, 201
MluCI AATT 2 cut(s) 292, 333
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 5 cut(s) 120, 176, 534, 619, 674
MspI CCGG 2 cut(s) 415, 454
MspR9I CCNGG 4 cut(s) 78, 213, 415, 455
MvaI CCWGG 2 cut(s) 78, 213
MwoI GCNNNNNNNGC 3 cut(s) 18, 24, 447
NciI CCSGG 2 cut(s) 415, 455
NdeII GATC 5 cut(s) 66, 205, 463, 480, 501
NlaIII CATG 3 cut(s) 31, 392, 605
NlaIV GGNNCC 2 cut(s) 145, 545
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 3 cut(s) 87, 272, 515
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 5 cut(s) 20, 23, 26, 449, 671
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 543
PsiI TTATAA 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 76, 211
PspEI GGTNACC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 76, 211
PspN4I GGNNCC 2 cut(s) 145, 545
PspPI GGNCC 2 cut(s) 456, 543
PspPPI RGGWCCY 1 cut(s) 543
PstNI CAGNNNCTG 1 cut(s) 623
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 3 cut(s) 194, 431, 570
RsaNI GTAC 3 cut(s) 193, 430, 569
SatI GCNGC 5 cut(s) 19, 22, 25, 448, 670
Sau3AI GATC 5 cut(s) 66, 205, 463, 480, 501
Sau96I GGNCC 2 cut(s) 456, 543
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 78, 213, 415, 455
SduI GDGCHC 2 cut(s) 146, 201
SetI ASST 7 cut(s) 79, 119, 168, 511, 565, 630, 691
SfaNI GCATC 1 cut(s) 37
SinI GGWCC 1 cut(s) 543
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 292, 333
SsiI CCGC 2 cut(s) 496, 670
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 76, 211, 413, 453
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 1 cut(s) 368
TaqI TCGA 2 cut(s) 308, 420
TaqII GACCGA 1 cut(s) 602
TasI AATT 2 cut(s) 292, 333
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 3 cut(s) 87, 272, 515
TscAI CASTG 2 cut(s) 13, 103
TseI GCWGC 4 cut(s) 18, 21, 24, 447
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 2 cut(s) 13, 103
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 543
XapI RAATTY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.