Prupe.2G202000_v2.0.a1
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000197
Physical Location & Seq
Reverse (-)
23841599 .. 23845657
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G202000.2

Sequence Viewer

Length: 1365 bp
ATGAGCAGCATCAGCACAATGGAAGAAGGGGATTCAATTCCTGTGGTCCTACCTGGGTTCAGATTCTACCCCACTGAAGAGGTGCTGGTGAGCTACTACTTGAAGAAGAAGACAGAGGGCAAGGACTCTGACTTCAGCCACATCATCCCTGAAATCGATGTCTGCAAGCATGAGCCTTGTGATGTTCCTGCGTTCTTTGAAGAGGCAGACTTTCCAGATCATGAGATGGAATGGTTCTTCTTCAGCCAACCTGATTATAAGTACACCAACAGCACTCGCTGCAACAGGGCCACAGATCAGGGCTTTTATAAAATCACAGGCAAGGTTCGTGAGATCAAGGCTCGACGATCCAAAGCTGTGATTGGTAAGAAGAGGACCTTGACTTTCTACGAAGGCCGTGTGCCCAATGCAAAGAAGACCAACTGGATCATGCATGAGTATTATCTCACCAACACTGAACTGGCCCAACTTGGTCCTAATACCAATCAGCGGAAGGACTTTGTTCTCTGCCGCCTGAAGAATAAGTCAGCTAATTATAAGAAGCTGAAGGATGATTCAATCTGCAATGAATTAGCTGATACTGGTTCTGGTGGCGGCATTGCCTCTAATTCTGAAGATGATCAAGCTGCAGGAGCCGATATGATTTCAGAACCATTAGAACATCTGGCCTCCCAAGAGGTAGGAGATGTTCTGAATGATAATGGTTCTGGTCTGATAGAAAACAATGATATTTCAATCTGTGATGATGATCAAATTGATGCCTGGATTTTCTCTGATTTTGATAGTCAAGCTGCATATGATTTGCTTCAAGAGCAGTATTGTGCTGAGCCGGGAGAAAATCTGGATTCACCCCTTCCTCCACCACAGCCAACTCTGCCACCTCTGCCACAGGATTACTGCTCCTCCACACAGCAGTCACCATTATACACAAATCAGGGAAATGTTCCCTGTGTCTATGATGGTGACTGCAATAGGCAGCAATCTCCGATTGGGGATAGGAATTCTTATCTTACACATAAGAATAATATGTCAATGAATAATCAAATTGAACCAGTGAGCAACATTACTTATGGTGTTCAAAATCGAGCTACAGGTGAAAGTAATTCAGAGGTTTATAATAATTCAACCAATGATTTCAAGGAACCAGTTTGCAACATCACTTATAATAGTAACAATGGAGCTCCAGATGAAAGGATTTTAGAGGCTGTTAAATTTCAGGGCGACGGGCCAAAAGAAAATCTGGGATCACCCTTTGATCCATTTCAGCTACTGGATTTCACACTGCTGTCACCAATGAACTCAGAACTGGGAGATTTTGAGCATGGCAATAAACTATGTTGGCATGCAATGAGTTGTAATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

455

Amino Acids

50.98

Weight (kDa)

4.56

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 5 cut(s) 258, 309, 537, 1116, 1164
AciI CCGC 3 cut(s) 490, 511, 594
AclWI GGATC 4 cut(s) 342, 434, 1250, 1252
AcsI RAATTY 2 cut(s) 1000, 1211
AcuI CTGAAG 6 cut(s) 96, 118, 226, 536, 566, 633
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 489
AjnI CCWGG 2 cut(s) 52, 761
Alw21I GWGCWC 1 cut(s) 1183
AlwI GGATC 4 cut(s) 342, 434, 1250, 1252
AlwNI CAGNNNCTG 1 cut(s) 1270
AoxI GGCC 5 cut(s) 288, 394, 462, 666, 1226
ApeKI GCWGC 5 cut(s) 6, 279, 626, 791, 976
ApoI RAATTY 2 cut(s) 1000, 1211
AspS9I GGNCC 6 cut(s) 46, 288, 375, 463, 473, 1226
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 8 cut(s) 100, 439, 840, 909, 974, 1106, 1239, 1281
AvaII GGWCC 3 cut(s) 46, 375, 473
BaeGI GKGCMC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 1183
BbsI GAAGAC 2 cut(s) 116, 422
Bbv12I GWGCWC 1 cut(s) 1183
BbvI GCAGC 5 cut(s) 18, 266, 613, 778, 988
BccI CCATC 2 cut(s) 220, 953
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 2 cut(s) 54, 763
BclI TGATCA 2 cut(s) 619, 748
BcnI CCSGG 1 cut(s) 831
BfmI CTRYAG 2 cut(s) 627, 1089
BisI GCNGC 7 cut(s) 7, 280, 511, 595, 627, 792, 977
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 7 cut(s) 8, 281, 512, 596, 628, 793, 978
Bme1390I CCNGG 3 cut(s) 54, 763, 831
Bme18I GGWCC 3 cut(s) 46, 375, 473
BmgT120I GGNCC 6 cut(s) 46, 288, 375, 463, 473, 1226
BmiI GGNNCC 2 cut(s) 634, 1143
BmrFI CCNGG 3 cut(s) 54, 763, 831
BmrI ACTGGG 1 cut(s) 1316
BmsI GCATC 2 cut(s) 18, 748
BmuI ACTGGG 1 cut(s) 1316
BpiI GAAGAC 2 cut(s) 116, 422
BpmI CTGGAG 1 cut(s) 1167
Bpu1102I GCTNAGC 1 cut(s) 825
BpuMI CCSGG 1 cut(s) 831
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 747
BsaJI CCNNGG 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse1I ACTGG 7 cut(s) 428, 465, 586, 1052, 1145, 1275, 1311
Bse3DI GCAATG 3 cut(s) 571, 597, 1353
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 2 cut(s) 54, 763
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 144, 556
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMI GCAATG 3 cut(s) 571, 597, 1353
BseMII CTCAG 2 cut(s) 816, 1314
BseNI ACTGG 7 cut(s) 428, 465, 586, 1052, 1145, 1275, 1311
BseRI GAGGAG 1 cut(s) 892
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 5 cut(s) 18, 266, 613, 778, 988
BshFI GGCC 5 cut(s) 290, 396, 464, 668, 1228
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 1183
BsiSI CCGG 1 cut(s) 830
BslI CCNNNNNNNGG 1 cut(s) 489
BsnI GGCC 5 cut(s) 290, 396, 464, 668, 1228
Bsp1286I GDGCHC 2 cut(s) 405, 1183
Bsp143I GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
Bsp1720I GCTNAGC 1 cut(s) 825
BspACI CCGC 3 cut(s) 490, 511, 594
BspANI GGCC 5 cut(s) 290, 396, 464, 668, 1228
BspCNI CTCAG 2 cut(s) 817, 1313
BspDI ATCGAT 1 cut(s) 156
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 634, 1143
BspMAI CTGCAG 1 cut(s) 631
BspPI GGATC 4 cut(s) 342, 434, 1250, 1252
BsrDI GCAATG 3 cut(s) 571, 597, 1353
BsrI ACTGG 7 cut(s) 428, 465, 586, 1052, 1145, 1275, 1311
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
Bst2UI CCWGG 2 cut(s) 54, 763
Bst6I CTCTTC 3 cut(s) 72, 195, 365
BstAPI GCANNNNNTGC 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 167, 1344
BstDEI CTNAG 2 cut(s) 825, 1300
BstF5I GGATG 2 cut(s) 144, 556
BstKTI GATC 9 cut(s) 220, 298, 336, 350, 429, 622, 751, 1247, 1258
BstMBI GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
BstMWI GCNNNNNNNGC 6 cut(s) 12, 279, 632, 811, 874, 883
BstNI CCWGG 2 cut(s) 54, 763
BstNSI RCATGY 1 cut(s) 1346
BstSCI CCNGG 3 cut(s) 52, 761, 829
BstSFI CTRYAG 2 cut(s) 627, 1089
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 5 cut(s) 18, 266, 613, 778, 988
BstV2I GAAGAC 2 cut(s) 116, 422
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 5 cut(s) 290, 396, 464, 668, 1228
BsuTUI ATCGAT 1 cut(s) 156
BtsCI GGATG 2 cut(s) 144, 556
BtsI GCAGTG 1 cut(s) 1280
BtsIMutI CAGTG 4 cut(s) 72, 453, 1059, 1280
Cac8I GCNNGC 2 cut(s) 167, 1344
CaiI CAGNNNCTG 1 cut(s) 1270
CciI TCATGA 1 cut(s) 220
Cfr13I GGNCC 6 cut(s) 46, 288, 375, 463, 473, 1226
ClaI ATCGAT 1 cut(s) 156
Csp6I GTAC 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 6 cut(s) 170, 221, 430, 434, 1322, 1343
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 825, 1300
DpnI GATC 9 cut(s) 219, 297, 335, 349, 428, 621, 750, 1246, 1257
DpnII GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
Eam1104I CTCTTC 3 cut(s) 72, 195, 365
EarI CTCTTC 3 cut(s) 72, 195, 365
Ecl136II GAGCTC 1 cut(s) 1181
Eco24I GRGCYC 1 cut(s) 1183
Eco47I GGWCC 3 cut(s) 46, 375, 473
Eco53kI GAGCTC 1 cut(s) 1181
Eco57I CTGAAG 6 cut(s) 96, 118, 226, 536, 566, 633
EcoICRI GAGCTC 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 375
EcoRI GAATTC 1 cut(s) 1000
EcoRII CCWGG 2 cut(s) 52, 761
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 1183
FaeI CATG 6 cut(s) 173, 224, 433, 437, 1325, 1346
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 6 cut(s) 169, 220, 429, 433, 1321, 1342
FauNDI CATATG 1 cut(s) 796
FbaI TGATCA 2 cut(s) 619, 748
Fnu4HI GCNGC 7 cut(s) 7, 280, 511, 595, 627, 792, 977
FokI GGATG 2 cut(s) 131, 563
FriOI GRGCYC 1 cut(s) 1183
Fsp4HI GCNGC 7 cut(s) 7, 280, 511, 595, 627, 792, 977
GluI GCNGC 7 cut(s) 7, 280, 511, 595, 627, 792, 977
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 5 cut(s) 290, 396, 464, 668, 1228
HapII CCGG 1 cut(s) 830
Hin1II CATG 6 cut(s) 173, 224, 433, 437, 1325, 1346
HinfI GANTC 5 cut(s) 32, 63, 125, 554, 845
HpaII CCGG 1 cut(s) 830
HphI GGTGA 8 cut(s) 100, 439, 840, 909, 974, 1106, 1239, 1281
Hpy166II GTNNAC 1 cut(s) 264
Hpy188III TCNNGA 6 cut(s) 215, 221, 329, 809, 842, 1184
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 2 cut(s) 348, 1226
HpyAV CCTTC 5 cut(s) 20, 386, 487, 541, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 279, 632, 811, 874, 883
HpyF3I CTNAG 2 cut(s) 825, 1300
Hsp92II CATG 6 cut(s) 173, 224, 433, 437, 1325, 1346
Ksp22I TGATCA 2 cut(s) 619, 748
Kzo9I GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
LmnI GCTCC 4 cut(s) 632, 905, 1178, 1186
Lsp1109I GCAGC 5 cut(s) 18, 266, 613, 778, 988
LweI GCATC 2 cut(s) 18, 748
MaeIII GTNAC 4 cut(s) 915, 962, 1169, 1287
MalI GATC 9 cut(s) 219, 297, 335, 349, 428, 621, 750, 1246, 1257
MboI GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
MhlI GDGCHC 2 cut(s) 405, 1183
MlyI GAGTC 1 cut(s) 119
Mph1103I ATGCAT 1 cut(s) 435
MseI TTAA 1 cut(s) 1209
MspA1I CMGCKG 1 cut(s) 490
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 3 cut(s) 54, 763, 831
MvaI CCWGG 2 cut(s) 54, 763
MwoI GCNNNNNNNGC 6 cut(s) 12, 279, 632, 811, 874, 883
NciI CCSGG 1 cut(s) 831
NdeI CATATG 1 cut(s) 796
NdeII GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
NlaIII CATG 6 cut(s) 173, 224, 433, 437, 1325, 1346
NlaIV GGNNCC 2 cut(s) 634, 1143
NmuCI GTSAC 3 cut(s) 915, 962, 1287
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 1346
PaeI GCATGC 1 cut(s) 1346
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 4 cut(s) 32, 63, 554, 845
PkrI GCNGC 7 cut(s) 8, 281, 512, 596, 628, 793, 978
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 375
PsiI TTATAA 5 cut(s) 258, 309, 537, 1116, 1164
Psp124BI GAGCTC 1 cut(s) 1183
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 52, 761
PspGI CCWGG 2 cut(s) 52, 761
PspN4I GGNNCC 2 cut(s) 634, 1143
PspPI GGNCC 6 cut(s) 46, 288, 375, 463, 473, 1226
PspPPI RGGWCCY 1 cut(s) 375
PsrI GAACNNNNNNTAC 2 cut(s) 672, 704
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 1270
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacI GAGCTC 1 cut(s) 1183
SaqAI TTAA 1 cut(s) 1209
SatI GCNGC 7 cut(s) 7, 280, 511, 595, 627, 792, 977
Sau3AI GATC 9 cut(s) 217, 295, 333, 347, 426, 619, 748, 1244, 1255
Sau96I GGNCC 6 cut(s) 46, 288, 375, 463, 473, 1226
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 54, 763, 831
SduI GDGCHC 2 cut(s) 405, 1183
SfaNI GCATC 2 cut(s) 18, 748
SfcI CTRYAG 2 cut(s) 627, 1089
SinI GGWCC 3 cut(s) 46, 375, 473
SphI GCATGC 1 cut(s) 1346
SsiI CCGC 3 cut(s) 490, 511, 594
SstI GAGCTC 1 cut(s) 1183
StyD4I CCNGG 3 cut(s) 52, 761, 829
TaqI TCGA 3 cut(s) 156, 343, 1084
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 513, 597
TfiI GAWTC 4 cut(s) 32, 63, 554, 845
Tru1I TTAA 1 cut(s) 1209
Tru9I TTAA 1 cut(s) 1209
TscAI CASTG 4 cut(s) 79, 460, 1059, 1287
TseFI GTSAC 3 cut(s) 915, 962, 1287
TseI GCWGC 5 cut(s) 6, 279, 626, 791, 976
Tsp45I GTSAC 3 cut(s) 915, 962, 1287
TspDTI ATGAA 4 cut(s) 582, 1049, 1203, 1310
TspRI CASTG 4 cut(s) 79, 460, 1059, 1287
VpaK11BI GGWCC 3 cut(s) 46, 375, 473
XapI RAATTY 2 cut(s) 1000, 1211
XceI RCATGY 1 cut(s) 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.