RLG00000030171
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000197
Physical Location & Seq
Forward (+)
56962566 .. 56964287
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030171

Sequence Viewer

Length: 786 bp
ATGTACGTCGGGTACTCGGGTGTACTTGAACTTCAAGAGCATAAATACACCATCACTCTACTCCTCTGCTCCTCAGGGCTCACCATTGAGAGAAAGGAGATACCACAACAACAATGTGAGCAGAGACAAAACGAACCCGCTTTCAGTGCCGCTGATCGATTGACCTCCCTGGCAGCTATGCTGGGGGCTGATACAGAGGCTCAGGACATGGACTGGTTCTTCTTCACCAGAAAGTATTACAAGTGCAACAAAAGCCCTAGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGCAAAGAGCATGGGATTAAGGCTCGACGATCCAAAGCTGTGATTGGGAACAAGAGGACATTGACTTTTTACCAGGGTCGTGTGCCGAAATCGAAGAAGAGCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAAATGGAGCTATTTCGTATCTGAAGCAGGCCCAGGCACAGGGAAGAGAGGAGTTGCTATTCCATCAACCTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCGGTCACGGGCATCCCAACAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAGTTGCAATCACCATTTCAAGATGGTGATTCTTGTCTTCTAGACAGGAATGAAGTTTCAACCTGTGATGAATATGAGACTCTGTATGATGTGTTTCCACAGCCATGTGATCTGCCGGAAGAAAATCTGGCTTCACTCTTACGTCCACCTCAGCAACAAGATTACCGCCTCTCCATACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

262

Amino Acids

29.82

Weight (kDa)

6.45

Isoelectric Point (pI)

64.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 64 - 142 7.4e-18 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AciI CCGC 5 cut(s) 138, 150, 520, 538, 769
AclWI GGATC 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 476, 513
AfaI GTAC 4 cut(s) 5, 14, 24, 422
AfiI CCNNNNNNNGG 3 cut(s) 437, 472, 559
AgsI TTSAA 4 cut(s) 29, 35, 623, 663
AjnI CCWGG 4 cut(s) 168, 372, 430, 465
AluBI AGCT 7 cut(s) 176, 261, 338, 405, 443, 559, 566
AluI AGCT 7 cut(s) 176, 261, 338, 405, 443, 559, 566
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 118, 674
AlwI GGATC 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 3 cut(s) 173, 402, 522
Asp700I GAANNNNTTC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 4 cut(s) 73, 217, 606, 641
AvaI CYCGRG 1 cut(s) 16
AxyI CCTNAGG 2 cut(s) 73, 510
BaeI ACNNNNGTAYC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 81
BarI GAAGNNNNNNTAC 4 cut(s) 15, 47, 269, 301
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 275
BbvCI CCTCAGC 2 cut(s) 504, 753
BbvI GCAGC 3 cut(s) 185, 414, 509
BccI CCATC 3 cut(s) 59, 504, 620
BciT130I CCWGG 4 cut(s) 170, 374, 432, 467
BciVI GTATCC 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 118, 674
BfaI CTAG 2 cut(s) 258, 644
BfmI CTRYAG 1 cut(s) 782
BfuI GTATCC 1 cut(s) 278
BisI GCNGC 4 cut(s) 150, 174, 403, 523
BlsI GCNGC 4 cut(s) 151, 175, 404, 524
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 4 cut(s) 170, 374, 432, 467
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 463
BmrFI CCNGG 4 cut(s) 170, 374, 432, 467
BmsI GCATC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 632
Bpu10I CCTNAGC 3 cut(s) 201, 504, 753
Bsa29I ATCGAT 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 168, 373, 465
BsaXI ACNNNNNCTCC 1 cut(s) 758
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 472, 559
Bse1I ACTGG 2 cut(s) 218, 293
Bse21I CCTNAGG 2 cut(s) 73, 510
BseBI CCWGG 4 cut(s) 170, 374, 432, 467
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 168, 373, 465
BseGI GGATG 2 cut(s) 520, 548
BseLI CCNNNNNNNGG 3 cut(s) 437, 472, 559
BseMII CTCAG 5 cut(s) 87, 215, 518, 524, 767
BseNI ACTGG 2 cut(s) 218, 293
BseRI GAGGAG 3 cut(s) 53, 61, 497
BseXI GCAGC 3 cut(s) 185, 414, 509
BseYI CCCAGC 2 cut(s) 181, 405
BshFI GGCC 1 cut(s) 464
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 437, 472, 559
BsmAI GTCTC 2 cut(s) 118, 674
BsnI GGCC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 81, 275
Bsp143I GATC 3 cut(s) 154, 329, 712
BspACI CCGC 5 cut(s) 138, 150, 520, 538, 769
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 5 cut(s) 86, 214, 517, 523, 766
BspDI ATCGAT 1 cut(s) 157
BspHI TCATGA 1 cut(s) 415
BspPI GGATC 1 cut(s) 324
BspQI GCTCTTC 2 cut(s) 392, 532
BsrI ACTGG 2 cut(s) 218, 293
BssECI CCNNGG 3 cut(s) 168, 373, 465
BssMI GATC 3 cut(s) 154, 329, 712
Bst2UI CCWGG 4 cut(s) 170, 374, 432, 467
Bst6I CTCTTC 3 cut(s) 392, 472, 532
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 5 cut(s) 73, 201, 504, 510, 753
BstF5I GGATG 2 cut(s) 520, 548
BstKTI GATC 3 cut(s) 157, 332, 715
BstMAI GTCTC 2 cut(s) 118, 674
BstMBI GATC 3 cut(s) 154, 329, 712
BstMWI GCNNNNNNNGC 2 cut(s) 146, 252
BstNI CCWGG 4 cut(s) 170, 374, 432, 467
BstSCI CCNGG 4 cut(s) 168, 372, 430, 465
BstSFI CTRYAG 1 cut(s) 782
BstV1I GCAGC 3 cut(s) 185, 414, 509
BstV2I GAAGAC 1 cut(s) 632
Bsu15I ATCGAT 1 cut(s) 157
Bsu36I CCTNAGG 2 cut(s) 73, 510
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 464
BsuTUI ATCGAT 1 cut(s) 157
BtsCI GGATG 2 cut(s) 520, 548
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 2 cut(s) 151, 533
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 463
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 4 cut(s) 4, 13, 23, 421
CviAII CATG 4 cut(s) 208, 311, 416, 708
CviQI GTAC 4 cut(s) 4, 13, 23, 421
DdeI CTNAG 5 cut(s) 73, 201, 504, 510, 753
DpnI GATC 3 cut(s) 156, 331, 714
DpnII GATC 3 cut(s) 154, 329, 712
Eam1104I CTCTTC 3 cut(s) 392, 472, 532
EarI CTCTTC 3 cut(s) 392, 472, 532
Eco24I GRGCYC 1 cut(s) 81
Eco57I CTGAAG 2 cut(s) 476, 513
Eco81I CCTNAGG 2 cut(s) 73, 510
Eco88I CYCGRG 1 cut(s) 16
EcoRII CCWGG 4 cut(s) 168, 372, 430, 465
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 4 cut(s) 211, 314, 419, 711
FatI CATG 4 cut(s) 207, 310, 415, 707
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 150, 174, 403, 523
FokI GGATG 2 cut(s) 527, 535
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 4 cut(s) 150, 174, 403, 523
FspBI CTAG 2 cut(s) 258, 644
GluI GCNGC 4 cut(s) 150, 174, 403, 523
GsaI CCCAGC 2 cut(s) 185, 409
HaeIII GGCC 1 cut(s) 464
HapII CCGG 1 cut(s) 719
Hin1II CATG 4 cut(s) 211, 314, 419, 711
HinfI GANTC 3 cut(s) 265, 632, 682
HpaII CCGG 1 cut(s) 719
HphI GGTGA 4 cut(s) 73, 217, 606, 641
Hpy166II GTNNAC 2 cut(s) 23, 749
Hpy188I TCNGA 2 cut(s) 270, 456
Hpy188III TCNNGA 6 cut(s) 35, 203, 416, 512, 623, 644
Hpy8I GTNNAC 2 cut(s) 23, 749
Hpy99I CGWCG 2 cut(s) 11, 330
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 2 cut(s) 6, 745
HpyCH4V TGCA 3 cut(s) 246, 574, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 252
HpyF3I CTNAG 5 cut(s) 73, 201, 504, 510, 753
HpySE526I ACGT 2 cut(s) 6, 745
Hsp92II CATG 4 cut(s) 211, 314, 419, 711
Kzo9I GATC 3 cut(s) 154, 329, 712
LguI GCTCTTC 2 cut(s) 392, 532
LmnI GCTCC 3 cut(s) 74, 270, 440
Lsp1109I GCAGC 3 cut(s) 185, 414, 509
LweI GCATC 1 cut(s) 557
MaeI CTAG 2 cut(s) 258, 644
MaeII ACGT 2 cut(s) 6, 745
MaeIII GTNAC 1 cut(s) 540
MalI GATC 3 cut(s) 156, 331, 714
MboI GATC 3 cut(s) 154, 329, 712
MhlI GDGCHC 2 cut(s) 81, 275
MlyI GAGTC 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 1 cut(s) 706
MspA1I CMGCKG 4 cut(s) 152, 405, 522, 559
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 4 cut(s) 170, 374, 432, 467
MvaI CCWGG 4 cut(s) 170, 374, 432, 467
MwoI GCNNNNNNNGC 2 cut(s) 146, 252
NdeII GATC 3 cut(s) 154, 329, 712
NlaIII CATG 4 cut(s) 211, 314, 419, 711
NmuCI GTSAC 1 cut(s) 540
PagI TCATGA 1 cut(s) 415
PciSI GCTCTTC 2 cut(s) 392, 532
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 265, 632
PflMI CCANNNNNTGG 1 cut(s) 559
PfoI TCCNGGA 1 cut(s) 430
PkrI GCNGC 4 cut(s) 151, 175, 404, 524
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
Psp6I CCWGG 4 cut(s) 168, 372, 430, 465
PspFI CCCAGC 2 cut(s) 181, 405
PspGI CCWGG 4 cut(s) 168, 372, 430, 465
PspPI GGNCC 1 cut(s) 463
PvuII CAGCTG 2 cut(s) 405, 559
RsaI GTAC 4 cut(s) 5, 14, 24, 422
RsaNI GTAC 4 cut(s) 4, 13, 23, 421
RseI CAYNNNNRTG 1 cut(s) 706
SapI GCTCTTC 2 cut(s) 392, 532
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 4 cut(s) 150, 174, 403, 523
Sau3AI GATC 3 cut(s) 154, 329, 712
Sau96I GGNCC 1 cut(s) 463
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 4 cut(s) 170, 374, 432, 467
SduI GDGCHC 2 cut(s) 81, 275
SfaNI GCATC 1 cut(s) 557
SfcI CTRYAG 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 706
SsiI CCGC 5 cut(s) 138, 150, 520, 538, 769
SspMI CTAG 2 cut(s) 258, 644
StyD4I CCNGG 4 cut(s) 168, 372, 430, 465
TaiI ACGT 2 cut(s) 9, 748
TaqI TCGA 4 cut(s) 157, 263, 325, 392
TatI WGTACW 2 cut(s) 22, 420
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 2 cut(s) 265, 632
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 151, 540
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 3 cut(s) 173, 402, 522
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 3 cut(s) 404, 669, 687
TspRI CASTG 2 cut(s) 151, 540
Van91I CCANNNNNTGG 1 cut(s) 559
XbaI TCTAGA 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 258, 644
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.