RLG00000014882
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000197
Physical Location & Seq
Reverse (-)
59078979 .. 59080856
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014882

Sequence Viewer

Length: 690 bp
ATGAATAGGGTTGGTTCTGATTTTGTTGTTTTTGTGTGTTGGGTTTGGGCAGCTTTGTTGGGCACTGAGACAGAGGCTCGTGACATGGAGTGGTTCTTCTTCACCAGAAAGGCGTACAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGGAAGGAGCGTTGGATTAAAACTCGACGATCCAAAGCTGTTATCGGGAAGAAGAGGACACCGACTTTTTGCCAGGGGCGTGCGCCGAAATCGAAGAAGACCAGCTGGGTTATTCACGAGCACTATCTTCCTGGAGATGGAGTTACTTCGTATCCGAAGCAGGCCCAGGGAAATGAGGAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCCGCTCCTCAGCACTGCAGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTTTTGTCTATTAGACGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACTATGTATGATGTGTTTCCCCAGCCACAAGAGTACCGCCCCTCCATACTGCAATCACCAATATACCCAAAGCTGCGAGATGTTCCCCATCCACTTCAGCCACAAGAGTACTGCCCCTCCATACTGCAGTCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

230

Amino Acids

26.38

Weight (kDa)

6.89

Isoelectric Point (pI)

74.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 100 1.4e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 396
AciI CCGC 2 cut(s) 394, 589
AclWI GGATC 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 4 cut(s) 116, 122, 587, 662
AfiI CCNNNNNNNGG 2 cut(s) 314, 430
AgeI ACCGGT 1 cut(s) 415
AgsI TTSAA 1 cut(s) 534
AjnI CCWGG 3 cut(s) 249, 307, 342
AluBI AGCT 7 cut(s) 53, 132, 215, 282, 430, 437, 625
AluI AGCT 7 cut(s) 53, 132, 215, 282, 430, 437, 625
Alw21I GWGCWC 2 cut(s) 152, 300
Alw26I GTCTC 2 cut(s) 62, 545
AlwI GGATC 1 cut(s) 201
AlwNI CAGNNNCTG 2 cut(s) 382, 685
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 50, 625
AsiGI ACCGGT 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 4 cut(s) 94, 405, 477, 600
BaeGI GKGCMC 1 cut(s) 65
BaeI ACNNNNGTAYC 2 cut(s) 569, 602
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BauI CACGAG 2 cut(s) 78, 293
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 2 cut(s) 152, 300
BbvCI CCTCAGC 2 cut(s) 375, 400
BbvI GCAGC 2 cut(s) 62, 612
BccI CCATC 3 cut(s) 308, 375, 648
BciT130I CCWGG 3 cut(s) 251, 309, 344
BciVI GTATCC 2 cut(s) 155, 339
BcoDI GTCTC 2 cut(s) 62, 545
BfmI CTRYAG 2 cut(s) 407, 677
BfuI GTATCC 2 cut(s) 155, 339
BisI GCNGC 3 cut(s) 51, 394, 626
BlsI GCNGC 3 cut(s) 52, 395, 627
BmcAI AGTACT 1 cut(s) 662
Bme1390I CCNGG 3 cut(s) 251, 309, 344
BmgT120I GGNCC 1 cut(s) 340
BmrFI CCNGG 3 cut(s) 251, 309, 344
BpiI GAAGAC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 375, 400
BsaJI CCNNGG 3 cut(s) 250, 342, 343
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 8 cut(s) 303, 333, 380, 410, 578, 608, 653, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 430
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 3 cut(s) 251, 309, 344
BseDI CCNNGG 3 cut(s) 250, 342, 343
BseGI GGATG 2 cut(s) 391, 640
BseLI CCNNNNNNNGG 2 cut(s) 314, 430
BseMII CTCAG 3 cut(s) 57, 389, 414
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 2 cut(s) 368, 388
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 2 cut(s) 62, 612
BseYI CCCAGC 2 cut(s) 282, 573
BshFI GGCC 1 cut(s) 341
BshTI ACCGGT 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 152, 300
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 314, 430
BsmAI GTCTC 2 cut(s) 62, 545
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 65, 152, 300
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 2 cut(s) 394, 589
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 3 cut(s) 58, 388, 413
BspMAI CTGCAG 2 cut(s) 411, 681
BspPI GGATC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 3 cut(s) 250, 342, 343
BssMI GATC 1 cut(s) 206
BssSI CACGAG 2 cut(s) 78, 293
Bst2BI CACGAG 2 cut(s) 78, 293
Bst2UI CCWGG 3 cut(s) 251, 309, 344
Bst4CI ACNGT 1 cut(s) 687
Bst6I CTCTTC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 258, 339
BstDEI CTNAG 3 cut(s) 66, 375, 400
BstF5I GGATG 2 cut(s) 391, 640
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 209
BstMAI GTCTC 2 cut(s) 62, 545
BstMBI GATC 1 cut(s) 206
BstNI CCWGG 3 cut(s) 251, 309, 344
BstSCI CCNGG 3 cut(s) 249, 307, 342
BstSFI CTRYAG 2 cut(s) 407, 677
BstSLI GKGCMC 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 62, 612
BstV2I GAAGAC 1 cut(s) 281
BsuI GTATCC 2 cut(s) 155, 339
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 2 cut(s) 391, 640
BtsI GCAGTG 1 cut(s) 404
BtsIMutI CAGTG 3 cut(s) 63, 404, 683
Cac8I GCNNGC 2 cut(s) 258, 339
CaiI CAGNNNCTG 2 cut(s) 382, 685
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 4 cut(s) 115, 121, 586, 661
CspAI ACCGGT 1 cut(s) 415
CviAII CATG 1 cut(s) 85
CviQI GTAC 4 cut(s) 115, 121, 586, 661
DdeI CTNAG 3 cut(s) 66, 375, 400
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 632
EcoRII CCWGG 3 cut(s) 249, 307, 342
FaeI CATG 1 cut(s) 88
FaiI YATR 6 cut(s) 86, 557, 561, 599, 616, 674
FaqI GGGAC 1 cut(s) 406
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 51, 394, 626
FokI GGATG 2 cut(s) 398, 627
Fsp4HI GCNGC 3 cut(s) 51, 394, 626
GlaI GCGC 1 cut(s) 261
GluI GCNGC 3 cut(s) 51, 394, 626
GsaI CCCAGC 2 cut(s) 286, 577
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 416
HhaI GCGC 1 cut(s) 262
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 416
HphI GGTGA 4 cut(s) 94, 405, 477, 600
Hpy188I TCNGA 3 cut(s) 19, 147, 333
Hpy188III TCNNGA 4 cut(s) 80, 223, 293, 383
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 151, 175
HpyCH4III ACNGT 1 cut(s) 687
HpyCH4V TGCA 5 cut(s) 409, 445, 481, 604, 679
HpyF3I CTNAG 3 cut(s) 66, 375, 400
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 3 cut(s) 147, 184, 401
Lsp1109I GCAGC 2 cut(s) 62, 612
MaeIII GTNAC 5 cut(s) 80, 319, 411, 454, 681
MalI GATC 1 cut(s) 208
MbiI CCGCTC 1 cut(s) 396
MboI GATC 1 cut(s) 206
MboII GAAGA 9 cut(s) 88, 91, 166, 238, 241, 283, 286, 296, 557
MhlI GDGCHC 3 cut(s) 65, 152, 300
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 8 cut(s) 67, 225, 346, 384, 390, 409, 604, 679
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 3 cut(s) 251, 309, 344
MvaI CCWGG 3 cut(s) 251, 309, 344
NdeII GATC 1 cut(s) 206
NlaIII CATG 1 cut(s) 88
NmuCI GTSAC 4 cut(s) 80, 411, 454, 681
PasI CCCWGGG 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 307
PinAI ACCGGT 1 cut(s) 415
PkrI GCNGC 3 cut(s) 52, 395, 627
Psp6I CCWGG 3 cut(s) 249, 307, 342
PspFI CCCAGC 2 cut(s) 282, 573
PspGI CCWGG 3 cut(s) 249, 307, 342
PspPI GGNCC 1 cut(s) 340
PstI CTGCAG 2 cut(s) 411, 681
PstNI CAGNNNCTG 2 cut(s) 382, 685
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 4 cut(s) 116, 122, 587, 662
RsaNI GTAC 4 cut(s) 115, 121, 586, 661
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 3 cut(s) 51, 394, 626
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 662
ScrFI CCNGG 3 cut(s) 251, 309, 344
SduI GDGCHC 3 cut(s) 65, 152, 300
SetI ASST 9 cut(s) 55, 134, 217, 284, 376, 432, 439, 539, 627
SfcI CTRYAG 2 cut(s) 407, 677
SgrAI CRCCGGYG 1 cut(s) 415
SsiI CCGC 2 cut(s) 394, 589
StyD4I CCNGG 3 cut(s) 249, 307, 342
TaaI ACNGT 1 cut(s) 687
TaqI TCGA 3 cut(s) 140, 202, 269
TatI WGTACW 2 cut(s) 120, 660
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 3 cut(s) 70, 411, 690
TseFI GTSAC 4 cut(s) 80, 411, 454, 681
TseI GCWGC 2 cut(s) 50, 625
Tsp45I GTSAC 4 cut(s) 80, 411, 454, 681
TspDTI ATGAA 3 cut(s) 17, 540, 558
TspRI CASTG 3 cut(s) 70, 411, 690
Van91I CCANNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.