Rroxscaffold_4G00294870
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000197
Physical Location & Seq
Forward (+)
14808701 .. 14810599
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294870.1

Sequence Viewer

Length: 915 bp
ATGAGCAGAGAGAACACGACGCCGCTTTCAGTGCCCATAGGCTACAGATTCCATCCCACCGAAGAGGAGCTTGTGAACCACTATTTGAAGAAGAAGATTCATGGTGGAAATGATTCTGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTCCCTGCTTTGTTGGGGACTGAAACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAAGACTTACAAGTACAACAAAAGCTCTCGCTCGAAGCGGAGCACGAACAAGGGATACTGGAAAATCACAGGCCCGGAGCGTGGGATTAAGGCTCGACGATCCAAAGCTGTGATTGCGAAGAAGAGGACATTGACTTTTTACCAGGGTCGTGTGCCGACATCGAAGAAGACCAGCTGGGTCATTCATGAGTATTACCTTCCTGGAAATGGAGTTATTCCGTATCCGAAGCAGGCCCAGGGTGACTTTGTTATCTGTCGCTTGAAGATTAGATCAGATAAGAAGGATTCTTCGGTCAGTAATGAGGAAGAACCTGGTAGCGCGAGTCTGTCTGAAATGAATCAAGAGGGAAATGAGGAGTTGCTTCTCCATCAACCTCAACCTCTGGATGACTGCGGCTCCTCAGCACTACGGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAACAGCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTCCTGTGTTCAAGATGGGAATGAAGTTTCAACCTGTGATGAATGTGAGACTGTGTATGATGTGTTTCCACAGTTACGTGATCTGCCAGAACAAAATCTGGATTCACTCTTTGGTCCACATCAGCCACAAGAGTACTGTCCATGTATACTGCAATCACCAATATACACAAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

304

Amino Acids

34.51

Weight (kDa)

5.31

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 3.2e-38 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 664
AccI GTMKAC 1 cut(s) 883
AccII CGCG 1 cut(s) 554
AciI CCGC 3 cut(s) 23, 271, 627
AclWI GGATC 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 248, 872
AfiI CCNNNNNNNGG 3 cut(s) 314, 440, 664
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 4 cut(s) 88, 496, 749, 768
AjnI CCWGG 4 cut(s) 375, 433, 468, 544
AluBI AGCT 8 cut(s) 70, 172, 258, 341, 408, 664, 671, 910
AluI AGCT 8 cut(s) 70, 172, 258, 341, 408, 664, 671, 910
Alw21I GWGCWC 2 cut(s) 174, 278
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 1 cut(s) 327
AoxI GGCC 2 cut(s) 304, 465
AsiGI ACCGGT 1 cut(s) 649
Asp700I GAANNNNTTC 2 cut(s) 112, 672
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 3 cut(s) 305, 466, 851
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 5 cut(s) 220, 485, 639, 711, 885
AvaII GGWCC 1 cut(s) 851
BaeGI GKGCMC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 174, 278
BbvCI CCTCAGC 1 cut(s) 634
BccI CCATC 3 cut(s) 60, 609, 746
BciT130I CCWGG 4 cut(s) 377, 435, 470, 546
BciVI GTATCC 2 cut(s) 281, 465
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 779
BfmI CTRYAG 1 cut(s) 43
BfuI GTATCC 2 cut(s) 281, 465
BisI GCNGC 2 cut(s) 23, 628
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 24, 629
BmcAI AGTACT 1 cut(s) 872
Bme1390I CCNGG 5 cut(s) 308, 377, 435, 470, 546
Bme18I GGWCC 1 cut(s) 851
BmgT120I GGNCC 3 cut(s) 305, 466, 851
BmiI GGNNCC 1 cut(s) 631
BmrFI CCNGG 5 cut(s) 308, 377, 435, 470, 546
BpiI GAAGAC 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 634
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 376, 468, 469
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 440, 664
Bse118I RCCGGY 2 cut(s) 163, 649
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 4 cut(s) 377, 435, 470, 546
BseDI CCNNGG 3 cut(s) 376, 468, 469
BseGI GGATG 3 cut(s) 52, 132, 625
BseLI CCNNNNNNNGG 3 cut(s) 314, 440, 664
BseMII CTCAG 2 cut(s) 159, 648
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 3 cut(s) 80, 602, 622
BseSI GKGCMC 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 2 cut(s) 306, 467
BshTI ACCGGT 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 174, 278
BsiSI CCGG 3 cut(s) 164, 308, 650
BslFI GGGAC 2 cut(s) 202, 640
BslI CCNNNNNNNGG 3 cut(s) 314, 440, 664
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 2 cut(s) 202, 640
BsnI GGCC 2 cut(s) 306, 467
Bsp1286I GDGCHC 3 cut(s) 36, 174, 278
Bsp143I GATC 3 cut(s) 332, 503, 817
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 3 cut(s) 23, 271, 627
BspANI GGCC 2 cut(s) 306, 467
BspCNI CTCAG 2 cut(s) 160, 647
BspFNI CGCG 1 cut(s) 554
BspHI TCATGA 2 cut(s) 205, 418
BspLI GGNNCC 1 cut(s) 631
BspPI GGATC 1 cut(s) 327
BsrFI RCCGGY 2 cut(s) 163, 649
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 2 cut(s) 163, 649
BssECI CCNNGG 3 cut(s) 376, 468, 469
BssMI GATC 3 cut(s) 332, 503, 817
BssNAI GTATAC 1 cut(s) 884
BssNI GRCGYC 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 884
Bst2UI CCWGG 4 cut(s) 377, 435, 470, 546
Bst4CI ACNGT 4 cut(s) 645, 790, 810, 875
Bst6I CTCTTC 2 cut(s) 57, 350
BstACI GRCGYC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 815
BstC8I GCNNGC 2 cut(s) 165, 465
BstDEI CTNAG 2 cut(s) 168, 634
BstEII GGTNACC 1 cut(s) 645
BstF5I GGATG 3 cut(s) 52, 132, 625
BstFNI CGCG 1 cut(s) 554
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 3 cut(s) 335, 506, 820
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 3 cut(s) 332, 503, 817
BstMWI GCNNNNNNNGC 3 cut(s) 31, 169, 347
BstNI CCWGG 4 cut(s) 377, 435, 470, 546
BstPI GGTNACC 1 cut(s) 645
BstSCI CCNGG 5 cut(s) 306, 375, 433, 468, 544
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 407
BstZ17I GTATAC 1 cut(s) 884
BsuI GTATCC 2 cut(s) 281, 465
BsuRI GGCC 2 cut(s) 306, 467
BtsCI GGATG 3 cut(s) 52, 132, 625
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 165, 465
CciI TCATGA 2 cut(s) 205, 418
CfoI GCGC 1 cut(s) 554
Cfr10I RCCGGY 2 cut(s) 163, 649
Cfr13I GGNCC 3 cut(s) 305, 466, 851
CseI GACGC 1 cut(s) 28
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 2 cut(s) 247, 871
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 5 cut(s) 101, 206, 211, 419, 879
CviQI GTAC 2 cut(s) 247, 871
DdeI CTNAG 2 cut(s) 168, 634
DpnI GATC 3 cut(s) 334, 505, 819
DpnII GATC 3 cut(s) 332, 503, 817
Eam1104I CTCTTC 2 cut(s) 57, 350
EarI CTCTTC 2 cut(s) 57, 350
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 851
Eco53kI GAGCTC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 645
EcoRII CCWGG 4 cut(s) 375, 433, 468, 544
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 5 cut(s) 104, 209, 214, 422, 882
FaiI YATR 9 cut(s) 38, 102, 207, 212, 420, 795, 880, 884, 901
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 202, 640
FatI CATG 5 cut(s) 100, 205, 210, 418, 878
FblI GTMKAC 1 cut(s) 883
Fnu4HI GCNGC 2 cut(s) 23, 628
FokI GGATG 3 cut(s) 39, 119, 632
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 23, 628
GlaI GCGC 1 cut(s) 553
GluI GCNGC 2 cut(s) 23, 628
GsaI CCCAGC 1 cut(s) 412
HaeIII GGCC 2 cut(s) 306, 467
HapII CCGG 3 cut(s) 164, 308, 650
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 5 cut(s) 104, 209, 214, 422, 882
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HinfI GANTC 8 cut(s) 48, 97, 113, 518, 556, 571, 737, 839
HpaII CCGG 3 cut(s) 164, 308, 650
HphI GGTGA 5 cut(s) 220, 485, 639, 711, 885
Hpy166II GTNNAC 3 cut(s) 76, 854, 884
Hpy188I TCNGA 4 cut(s) 118, 459, 508, 565
Hpy188III TCNNGA 6 cut(s) 206, 419, 575, 617, 749, 836
Hpy8I GTNNAC 3 cut(s) 76, 854, 884
Hpy99I CGWCG 2 cut(s) 22, 333
HpyAV CCTTC 2 cut(s) 440, 508
HpyCH4III ACNGT 4 cut(s) 645, 790, 810, 875
HpyCH4IV ACGT 1 cut(s) 814
HpyCH4V TGCA 4 cut(s) 153, 679, 715, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 169, 347
HpyF3I CTNAG 2 cut(s) 168, 634
HpySE526I ACGT 1 cut(s) 814
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 5 cut(s) 104, 209, 214, 422, 882
HspAI GCGC 1 cut(s) 552
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 332, 503, 817
LmnI GCTCC 5 cut(s) 67, 177, 273, 310, 635
MabI ACCWGGT 1 cut(s) 544
MaeII ACGT 1 cut(s) 814
MaeIII GTNAC 3 cut(s) 473, 645, 810
MalI GATC 3 cut(s) 334, 505, 819
MboI GATC 3 cut(s) 332, 503, 817
MhlI GDGCHC 3 cut(s) 36, 174, 278
MlyI GAGTC 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 112, 672
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 408
MspI CCGG 3 cut(s) 164, 308, 650
MspR9I CCNGG 5 cut(s) 308, 377, 435, 470, 546
MvaI CCWGG 4 cut(s) 377, 435, 470, 546
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 3 cut(s) 31, 169, 347
NaeI GCCGGC 1 cut(s) 165
NciI CCSGG 1 cut(s) 308
NdeII GATC 3 cut(s) 332, 503, 817
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 5 cut(s) 104, 209, 214, 422, 882
NlaIV GGNNCC 1 cut(s) 631
NmuCI GTSAC 2 cut(s) 473, 645
PagI TCATGA 2 cut(s) 205, 418
PasI CCCWGGG 1 cut(s) 469
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 112, 672
PfeI GAWTC 7 cut(s) 48, 97, 113, 518, 571, 737, 839
PflMI CCANNNNNTGG 1 cut(s) 664
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 649
PkrI GCNGC 2 cut(s) 24, 629
PleI GAGTC 1 cut(s) 564
PpsI GAGTC 1 cut(s) 564
Ppu21I YACGTR 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 4 cut(s) 375, 433, 468, 544
PspEI GGTNACC 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 4 cut(s) 375, 433, 468, 544
PspN4I GGNNCC 1 cut(s) 631
PspPI GGNCC 3 cut(s) 305, 466, 851
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 2 cut(s) 248, 872
RsaNI GTAC 2 cut(s) 247, 871
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 23, 628
Sau3AI GATC 3 cut(s) 332, 503, 817
Sau96I GGNCC 3 cut(s) 305, 466, 851
ScaI AGTACT 1 cut(s) 872
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 5 cut(s) 308, 377, 435, 470, 546
SduI GDGCHC 3 cut(s) 36, 174, 278
SexAI ACCWGGT 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 649
SinI GGWCC 1 cut(s) 851
SsiI CCGC 3 cut(s) 23, 271, 627
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 5 cut(s) 306, 375, 433, 468, 544
TaaI ACNGT 4 cut(s) 645, 790, 810, 875
TaiI ACGT 1 cut(s) 817
TaqI TCGA 4 cut(s) 144, 266, 328, 395
TaqII GACCGA 1 cut(s) 514
TatI WGTACW 2 cut(s) 246, 870
TauI GCSGC 2 cut(s) 25, 630
TfiI GAWTC 7 cut(s) 48, 97, 113, 518, 571, 737, 839
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 2 cut(s) 473, 645
Tsp45I GTSAC 2 cut(s) 473, 645
TspDTI ATGAA 5 cut(s) 89, 407, 584, 774, 792
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 664
VpaK11BI GGWCC 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 883
XmnI GAANNNNTTC 2 cut(s) 112, 672
ZrmI AGTACT 1 cut(s) 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.