Rorug01G0047400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000197
Physical Location & Seq
Reverse (-)
7885024 .. 7885392
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0047400.1

Sequence Viewer

Length: 369 bp
ATGTATTCCAAATGCGGCAATTTGGGGGCCGGAAGGCAGGTATTCAAACTCATGGGTGACAAGCAAGACACCGTATTATGGAACACAATGATGTCTGCCTTGGCACACCATGGTCATGGTAGAGAGACATTGCAGATGTTTGAAGACATGGTCAGTTCAGGTGTAAAGCCGGTTACGACCACCTTTGTTCTCATTCTCAATGCTTGTAGTCATTCTGGTCTAGTGCAGGAAGCGCGTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTCATGAGGAACATTATGCATGCTTAATTGATGTCTTGGGTCGAGCTGGATGTTTTGATGAATTGATCTCTGGGTTTGGATGCTTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

122

Amino Acids

13.46

Weight (kDa)

6.02

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 23 - 70 3.3e-11 PPR repeat family
PPR PF01535 25 - 55 5.2e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 3 cut(s) 46, 143, 247
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 99, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse118I RCCGGY 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 99, 109
BseGI GGATG 2 cut(s) 332, 362
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 2 cut(s) 30, 170
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 29
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 99, 109
BssMI GATC 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 99, 109
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 298
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 332, 362
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 300
BstUI CGCG 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 150
BstXI CCANNNNNNTGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 332, 362
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 7 cut(s) 52, 110, 116, 148, 253, 281, 297
CviJI RGCY 4 cut(s) 29, 169, 241, 323
CviKI_1 RGCY 4 cut(s) 29, 169, 241, 323
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco130I CCWWGG 2 cut(s) 99, 109
EcoT14I CCWWGG 2 cut(s) 99, 109
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 99, 109
FaeI CATG 7 cut(s) 55, 113, 119, 151, 256, 284, 300
FatI CATG 7 cut(s) 51, 109, 115, 147, 252, 280, 296
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 30, 170
HhaI GCGC 1 cut(s) 235
Hin1II CATG 7 cut(s) 55, 113, 119, 151, 256, 284, 300
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HpaII CCGG 2 cut(s) 30, 170
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 368
Hpy188III TCNNGA 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 133, 226, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92II CATG 7 cut(s) 55, 113, 119, 151, 256, 284, 300
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 342
LpnPI CCDG 8 cut(s) 23, 43, 144, 183, 201, 212, 309, 333
LweI GCATC 1 cut(s) 347
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 56, 172
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 155
MluCI AATT 3 cut(s) 19, 303, 338
MnlI CCTC 2 cut(s) 277, 288
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 2 cut(s) 302, 362
MslI CAYNNNNRTG 2 cut(s) 89, 114
MspI CCGG 2 cut(s) 30, 170
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 232
NcoI CCATGG 1 cut(s) 109
NdeII GATC 1 cut(s) 342
NlaIII CATG 7 cut(s) 55, 113, 119, 151, 256, 284, 300
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 300
PaeI GCATGC 1 cut(s) 300
PagI TCATGA 1 cut(s) 280
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 27
PsyI GACNNNGTC 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 89, 114
SaqAI TTAA 2 cut(s) 302, 362
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 27
SetI ASST 4 cut(s) 42, 163, 185, 325
SfaNI GCATC 1 cut(s) 347
SmiMI CAYNNNNRTG 2 cut(s) 89, 114
SphI GCATGC 1 cut(s) 300
Sse9I AATT 3 cut(s) 19, 303, 338
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 99, 109
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 319
TasI AATT 3 cut(s) 19, 303, 338
TauI GCSGC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 302, 362
Tru9I TTAA 2 cut(s) 302, 362
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 149
XceI RCATGY 1 cut(s) 300
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.