Rh1AG300300
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000197
Physical Location & Seq
Reverse (-)
53254230 .. 53270272
16043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300300.1

Sequence Viewer

Length: 915 bp
ATGAGCAGAGACAAAACGACGCCGCTTTCAGTGCCGGTAGGCTACAGGTTCCTTCCCACCGAAGAGGAGCTTGTGAACCACTATTTGAAGAAGAAGATTCATGGTGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTCCCTGCTTTGTTGGGGACTGAGACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAAGGCTTATAAGTACAACAAAAGCTCTCGCTCGAATAGGAGCACGAAGAAGGGATACTGGAAGATCTCAGGGAAGGAGCGTGGAATTAAAGCTCGACGATCCAAAGCTGTGATTGGGATGAAGAAGACATTGACTTTTTACCAGGGTCGTGTGCCGAAATCGAAGAAGACCAGCTGGGTCATTCATGAGTACTATCTTCCTGGAAATGGAGTTATTCAGAAGCAAGCCCAGGGCGACTTTGTTATCTGTCGCTTGAAGATTAGATCAGATAAGAAGGATTCTTTGGTCAGTAATGAAGGACAATCCGGTAGCGCGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGGAATTGCTATTCCATCAACCTCAGCCTCAGGACTGTTGCTCCTCAGCACTGTGGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAACAACACTAATGATGATTGTAATGAGTTACAATCACCATTTGGAGATAGTGATTCCTGTCATCAAGACGGGAATGAAGTTTCAACCTGTGATGAATATGAGACTGTGTATGATGTGTTTCCACAGAGGTGGGACACACCAATGATGCAAGCCTTTCCATCCCACTCAGCTGAGCTTGCTCAGGAAGATATATCAGCGACTTTGAACTCGAAACACAGTGATCGATCACTTGGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

304

Amino Acids

34.42

Weight (kDa)

5.82

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 143 6.7e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 655
AccII CGCG 1 cut(s) 548
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 2 cut(s) 248, 425
AfiI CCNNNNNNNGG 2 cut(s) 440, 655
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 4 cut(s) 88, 490, 759, 880
AjnI CCWGG 3 cut(s) 375, 433, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AleI CACNNNNGTG 1 cut(s) 802
Alw21I GWGCWC 2 cut(s) 174, 278
Alw26I GTCTC 3 cut(s) 3, 188, 770
AlwI GGATC 1 cut(s) 327
AsiGI ACCGGT 1 cut(s) 640
Asp700I GAANNNNTTC 2 cut(s) 112, 663
AspLEI GCGC 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 220, 630, 702
AxyI CCTNAGG 1 cut(s) 609
BanII GRGCYC 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BbsI GAAGAC 2 cut(s) 365, 407
Bbv12I GWGCWC 2 cut(s) 174, 278
BbvCI CCTCAGC 2 cut(s) 603, 625
BccI CCATC 2 cut(s) 603, 841
BciT130I CCWGG 3 cut(s) 377, 435, 464
BciVI GTATCC 1 cut(s) 281
BcoDI GTCTC 3 cut(s) 3, 188, 770
BfmI CTRYAG 1 cut(s) 43
BfuI GTATCC 1 cut(s) 281
BglII AGATCT 1 cut(s) 297
BisI GCNGC 1 cut(s) 23
BlpI GCTNAGC 2 cut(s) 168, 846
BlsI GCNGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 3 cut(s) 377, 435, 464
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 3 cut(s) 377, 435, 464
BmsI GCATC 1 cut(s) 810
BpiI GAAGAC 2 cut(s) 365, 407
Bpu10I CCTNAGC 3 cut(s) 603, 625, 855
Bpu1102I GCTNAGC 2 cut(s) 168, 846
Bsa29I ATCGAT 1 cut(s) 898
BsaHI GRCGYC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 376, 462, 463
BsaWI WCCGGW 2 cut(s) 539, 640
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 655
Bse118I RCCGGY 3 cut(s) 34, 163, 640
Bse1I ACTGG 1 cut(s) 296
Bse21I CCTNAGG 1 cut(s) 609
BseBI CCWGG 3 cut(s) 377, 435, 464
BseCI ATCGAT 1 cut(s) 898
BseDI CCNNGG 3 cut(s) 376, 462, 463
BseGI GGATG 3 cut(s) 132, 357, 833
BseLI CCNNNNNNNGG 2 cut(s) 440, 655
BseMII CTCAG 9 cut(s) 159, 183, 315, 617, 623, 639, 837, 855, 869
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 2 cut(s) 80, 613
BseYI CCCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 548
BshTI ACCGGT 1 cut(s) 640
BshVI ATCGAT 1 cut(s) 898
BsiHKAI GWGCWC 2 cut(s) 174, 278
BsiSI CCGG 4 cut(s) 35, 164, 540, 641
BslFI GGGAC 3 cut(s) 202, 631, 821
BslI CCNNNNNNNGG 2 cut(s) 440, 655
BsmAI GTCTC 3 cut(s) 3, 188, 770
BsmFI GGGAC 3 cut(s) 202, 631, 821
Bsp1286I GDGCHC 2 cut(s) 174, 278
Bsp143I GATC 5 cut(s) 297, 332, 497, 895, 899
Bsp1720I GCTNAGC 2 cut(s) 168, 846
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 9 cut(s) 160, 184, 314, 616, 622, 638, 838, 854, 868
BspDI ATCGAT 1 cut(s) 898
BspFNI CGCG 1 cut(s) 548
BspHI TCATGA 2 cut(s) 205, 418
BspLI GGNNCC 1 cut(s) 50
BspPI GGATC 1 cut(s) 327
BsrFI RCCGGY 3 cut(s) 34, 163, 640
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 3 cut(s) 34, 163, 640
BssECI CCNNGG 3 cut(s) 376, 462, 463
BssMI GATC 5 cut(s) 297, 332, 497, 895, 899
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 3 cut(s) 377, 435, 464
Bst4CI ACNGT 4 cut(s) 617, 633, 781, 893
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 165, 459, 825, 852
BstDEI CTNAG 9 cut(s) 168, 192, 301, 603, 609, 625, 841, 846, 855
BstEII GGTNACC 1 cut(s) 636
BstF5I GGATG 3 cut(s) 132, 357, 833
BstFNI CGCG 1 cut(s) 548
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 5 cut(s) 300, 335, 500, 898, 902
BstMAI GTCTC 3 cut(s) 3, 188, 770
BstMBI GATC 5 cut(s) 297, 332, 497, 895, 899
BstMWI GCNNNNNNNGC 3 cut(s) 31, 169, 851
BstNI CCWGG 3 cut(s) 377, 435, 464
BstPI GGTNACC 1 cut(s) 636
BstSCI CCNGG 3 cut(s) 375, 433, 462
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 548
BstV2I GAAGAC 2 cut(s) 365, 407
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 804
BstYI RGATCY 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 898
Bsu36I CCTNAGG 1 cut(s) 609
BsuI GTATCC 1 cut(s) 281
BsuTUI ATCGAT 1 cut(s) 898
BtsCI GGATG 3 cut(s) 132, 357, 833
BtsIMutI CAGTG 3 cut(s) 36, 629, 898
Cac8I GCNNGC 4 cut(s) 165, 459, 825, 852
CciI TCATGA 2 cut(s) 205, 418
CfoI GCGC 1 cut(s) 548
Cfr10I RCCGGY 3 cut(s) 34, 163, 640
ClaI ATCGAT 1 cut(s) 898
CseI GACGC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 247, 424
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 4 cut(s) 101, 206, 211, 419
CviQI GTAC 2 cut(s) 247, 424
DdeI CTNAG 9 cut(s) 168, 192, 301, 603, 609, 625, 841, 846, 855
DpnI GATC 5 cut(s) 299, 334, 499, 897, 901
DpnII GATC 5 cut(s) 297, 332, 497, 895, 899
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 172
Eco81I CCTNAGG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 636
EcoRII CCWGG 3 cut(s) 375, 433, 462
EcoT38I GRGCYC 1 cut(s) 174
FaeI CATG 4 cut(s) 104, 209, 214, 422
FaiI YATR 8 cut(s) 102, 207, 212, 243, 420, 774, 786, 866
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 3 cut(s) 202, 631, 821
FatI CATG 4 cut(s) 100, 205, 210, 418
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 3 cut(s) 119, 364, 820
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 23
GlaI GCGC 1 cut(s) 547
GluI GCNGC 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 412
HapII CCGG 4 cut(s) 35, 164, 540, 641
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 548
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 4 cut(s) 104, 209, 214, 422
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HinfI GANTC 5 cut(s) 97, 113, 512, 565, 728
HpaII CCGG 4 cut(s) 35, 164, 540, 641
HphI GGTGA 3 cut(s) 220, 630, 702
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 118, 453, 502, 559
Hpy188III TCNNGA 6 cut(s) 206, 419, 569, 611, 740, 857
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 22, 333
HpyAV CCTTC 5 cut(s) 62, 277, 301, 502, 524
HpyCH4III ACNGT 4 cut(s) 617, 633, 781, 893
HpyCH4V TGCA 3 cut(s) 153, 670, 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 169, 851
HpyF3I CTNAG 9 cut(s) 168, 192, 301, 603, 609, 625, 841, 846, 855
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 4 cut(s) 104, 209, 214, 422
HspAI GCGC 1 cut(s) 546
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 5 cut(s) 297, 332, 497, 895, 899
LmnI GCTCC 5 cut(s) 67, 177, 273, 310, 626
LweI GCATC 1 cut(s) 810
MaeIII GTNAC 2 cut(s) 636, 702
MalI GATC 5 cut(s) 299, 334, 499, 897, 901
MboI GATC 5 cut(s) 297, 332, 497, 895, 899
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 174, 278
MluCI AATT 2 cut(s) 318, 584
MnlI CCTC 9 cut(s) 58, 158, 193, 565, 574, 612, 618, 634, 795
MroNI GCCGGC 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 112, 663
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 802, 815
MspA1I CMGCKG 2 cut(s) 408, 845
MspI CCGG 4 cut(s) 35, 164, 540, 641
MspR9I CCNGG 3 cut(s) 377, 435, 464
MvaI CCWGG 3 cut(s) 377, 435, 464
MvnI CGCG 1 cut(s) 548
MwoI GCNNNNNNNGC 3 cut(s) 31, 169, 851
NaeI GCCGGC 1 cut(s) 165
NdeII GATC 5 cut(s) 297, 332, 497, 895, 899
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 4 cut(s) 104, 209, 214, 422
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 636
OliI CACNNNNGTG 1 cut(s) 802
PagI TCATGA 2 cut(s) 205, 418
PasI CCCWGGG 1 cut(s) 463
PdiI GCCGGC 1 cut(s) 165
PdmI GAANNNNTTC 2 cut(s) 112, 663
PfeI GAWTC 5 cut(s) 97, 113, 512, 565, 728
PflMI CCANNNNNTGG 1 cut(s) 655
PfoI TCCNGGA 1 cut(s) 433
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 1 cut(s) 24
PsiI TTATAA 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 3 cut(s) 375, 433, 462
PspEI GGTNACC 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 408
PspGI CCWGG 3 cut(s) 375, 433, 462
PspN4I GGNNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 297
PvuII CAGCTG 2 cut(s) 408, 845
RsaI GTAC 2 cut(s) 248, 425
RsaNI GTAC 2 cut(s) 247, 424
RseI CAYNNNNRTG 2 cut(s) 802, 815
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 5 cut(s) 297, 332, 497, 895, 899
ScaI AGTACT 1 cut(s) 425
ScrFI CCNGG 3 cut(s) 377, 435, 464
SduI GDGCHC 2 cut(s) 174, 278
SfaNI GCATC 1 cut(s) 810
SfcI CTRYAG 1 cut(s) 43
SgrAI CRCCGGYG 1 cut(s) 640
SmiMI CAYNNNNRTG 2 cut(s) 802, 815
Sse9I AATT 2 cut(s) 318, 584
SsiI CCGC 1 cut(s) 23
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 3 cut(s) 375, 433, 462
TaaI ACNGT 4 cut(s) 617, 633, 781, 893
TaqI TCGA 6 cut(s) 144, 266, 328, 395, 884, 898
TasI AATT 2 cut(s) 318, 584
TatI WGTACW 2 cut(s) 246, 423
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 5 cut(s) 97, 113, 512, 565, 728
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 3 cut(s) 36, 636, 898
TseFI GTSAC 1 cut(s) 636
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 7 cut(s) 89, 368, 407, 543, 578, 765, 783
TspRI CASTG 3 cut(s) 36, 636, 898
Van91I CCANNNNNTGG 1 cut(s) 655
XmnI GAANNNNTTC 2 cut(s) 112, 663
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.