Rroxscaffold_4G00294950
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000197
Physical Location & Seq
Forward (+)
14872329 .. 14873845
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294950.1

Sequence Viewer

Length: 765 bp
ATGAAATCAACCAAATCATCCCAAAAATACACCTCTGCAAATACGAGCCGGCTGAGCTCCCTGCTTAATTTGTTGGGCACTGAGACAGAGGCTCGTGACATGGAGTGGTTCTTCTTCACCAGAAAGGCTTACAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGGGATACTGGAAAATCACAGGGAAGGAGCGTGGGATTAAAGCTCAACGATCCAAATCTGTTATCGGGAAGAAGAGGACATTGACTTTTTACCAGGGGCGTGCGCCGAAATCGAAAAAAGACCAGCTGGGTTATTCATGGGCACTATCTTCCTGGAGATGGAGTTGCTTCGTATCCGAAGCAGGCCCAGATAAGAAGGATTCTCCGGTCAGTAATAAAGGAGAACCCAGAAGCACGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGAAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTCTTATCTATTAGATGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACTATGTATGATGTGTTTCCACAGGTGAGATTGAACATGCTGCTGTTGTTGTTTTACATTTCGGCTATAAATCCAAGAACTATAGCAAAACTTAGGTCACAAGACAGTGGAAAGAGAAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

254

Amino Acids

28.8

Weight (kDa)

9.11

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 28 - 104 4.9e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 517
AclWI GGATC 1 cut(s) 216
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 2 cut(s) 330, 517
AgeI ACCGGT 1 cut(s) 502
AgsI TTSAA 2 cut(s) 621, 673
AjnI CCWGG 2 cut(s) 264, 323
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 6 cut(s) 57, 147, 215, 298, 517, 524
AluI AGCT 6 cut(s) 57, 147, 215, 298, 517, 524
Alw21I GWGCWC 2 cut(s) 59, 167
Alw26I GTCTC 2 cut(s) 77, 632
AlwI GGATC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 469
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 480, 679
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AsiGI ACCGGT 1 cut(s) 502
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 4 cut(s) 109, 492, 564, 676
BaeGI GKGCMC 2 cut(s) 80, 316
BanII GRGCYC 1 cut(s) 59
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BauI CACGAG 2 cut(s) 93, 406
Bbv12I GWGCWC 2 cut(s) 59, 167
BbvCI CCTCAGC 2 cut(s) 462, 487
BbvI GCAGC 2 cut(s) 467, 666
BccI CCATC 3 cut(s) 324, 462, 599
BciT130I CCWGG 2 cut(s) 266, 325
BciVI GTATCC 2 cut(s) 170, 355
BcoDI GTCTC 2 cut(s) 77, 632
BfmI CTRYAG 2 cut(s) 494, 720
BfuI GTATCC 2 cut(s) 170, 355
BisI GCNGC 2 cut(s) 481, 680
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 2 cut(s) 482, 681
Bme1390I CCNGG 2 cut(s) 266, 325
BmgT120I GGNCC 1 cut(s) 356
BmrFI CCNGG 2 cut(s) 266, 325
BpmI CTGGAG 1 cut(s) 346
Bpu10I CCTNAGC 2 cut(s) 462, 487
Bpu1102I GCTNAGC 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 226, 594
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 376, 502
BsaXI ACNNNNNCTCC 4 cut(s) 319, 349, 467, 497
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 517
Bse118I RCCGGY 2 cut(s) 48, 502
Bse1I ACTGG 1 cut(s) 185
Bse8I GATNNNNATC 2 cut(s) 226, 594
BseBI CCWGG 2 cut(s) 266, 325
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 2 cut(s) 17, 478
BseJI GATNNNNATC 2 cut(s) 226, 594
BseLI CCNNNNNNNGG 2 cut(s) 330, 517
BseMII CTCAG 4 cut(s) 44, 72, 476, 501
BseNI ACTGG 1 cut(s) 185
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 2 cut(s) 80, 316
BseXI GCAGC 2 cut(s) 467, 666
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 357
BshTI ACCGGT 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 59, 167
BsiSI CCGG 3 cut(s) 49, 377, 503
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 2 cut(s) 330, 517
BsmAI GTCTC 2 cut(s) 77, 632
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 4 cut(s) 59, 80, 167, 316
Bsp143I GATC 1 cut(s) 221
Bsp1720I GCTNAGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 4 cut(s) 45, 73, 475, 500
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 1 cut(s) 216
BsrFI RCCGGY 2 cut(s) 48, 502
BsrI ACTGG 1 cut(s) 185
BssAI RCCGGY 2 cut(s) 48, 502
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 221
BssSI CACGAG 2 cut(s) 93, 406
Bst2BI CACGAG 2 cut(s) 93, 406
Bst2UI CCWGG 2 cut(s) 266, 325
Bst4CI ACNGT 1 cut(s) 746
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 50, 273, 355
BstDEI CTNAG 5 cut(s) 53, 81, 462, 487, 731
BstF5I GGATG 2 cut(s) 17, 478
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 2 cut(s) 77, 632
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 2 cut(s) 266, 325
BstNSI RCATGY 1 cut(s) 679
BstSCI CCNGG 2 cut(s) 264, 323
BstSFI CTRYAG 2 cut(s) 494, 720
BstSLI GKGCMC 2 cut(s) 80, 316
BstV1I GCAGC 2 cut(s) 467, 666
BsuI GTATCC 2 cut(s) 170, 355
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 2 cut(s) 17, 478
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 3 cut(s) 78, 491, 751
Cac8I GCNNGC 3 cut(s) 50, 273, 355
CaiI CAGNNNCTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 2 cut(s) 48, 502
Cfr13I GGNCC 1 cut(s) 356
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 502
CviAII CATG 3 cut(s) 100, 309, 676
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 5 cut(s) 53, 81, 462, 487, 731
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 2 cut(s) 264, 323
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 3 cut(s) 103, 312, 679
FaiI YATR 7 cut(s) 101, 310, 644, 648, 677, 707, 722
FaqI GGGAC 1 cut(s) 493
FatI CATG 3 cut(s) 99, 308, 675
Fnu4HI GCNGC 2 cut(s) 481, 680
FokI GGATG 2 cut(s) 4, 485
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 481, 680
GlaI GCGC 1 cut(s) 276
GluI GCNGC 2 cut(s) 481, 680
GsaI CCCAGC 1 cut(s) 302
GsuI CTGGAG 1 cut(s) 346
HaeIII GGCC 1 cut(s) 357
HapII CCGG 3 cut(s) 49, 377, 503
HhaI GCGC 1 cut(s) 277
Hin1II CATG 3 cut(s) 103, 312, 679
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 4 cut(s) 157, 371, 424, 590
HpaII CCGG 3 cut(s) 49, 377, 503
HphI GGTGA 4 cut(s) 109, 492, 564, 676
Hpy188I TCNGA 3 cut(s) 162, 349, 418
Hpy188III TCNNGA 4 cut(s) 95, 238, 428, 470
HpyAV CCTTC 3 cut(s) 166, 190, 361
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4V TGCA 4 cut(s) 38, 496, 532, 568
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 5 cut(s) 53, 81, 462, 487, 731
Hsp92II CATG 3 cut(s) 103, 312, 679
HspAI GCGC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 4 cut(s) 62, 162, 199, 488
Lsp1109I GCAGC 2 cut(s) 467, 666
MaeIII GTNAC 4 cut(s) 95, 498, 541, 735
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 7 cut(s) 103, 106, 181, 253, 256, 312, 644
MhlI GDGCHC 4 cut(s) 59, 80, 167, 316
MluCI AATT 2 cut(s) 67, 757
MnlI CCTC 7 cut(s) 43, 82, 240, 424, 471, 477, 496
MroNI GCCGGC 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 2 cut(s) 66, 210
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 3 cut(s) 49, 377, 503
MspR9I CCNGG 2 cut(s) 266, 325
MvaI CCWGG 2 cut(s) 266, 325
MwoI GCNNNNNNNGC 1 cut(s) 54
NaeI GCCGGC 1 cut(s) 50
NdeII GATC 1 cut(s) 221
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 3 cut(s) 103, 312, 679
NmuCI GTSAC 4 cut(s) 95, 498, 541, 735
NspI RCATGY 1 cut(s) 679
OliI CACNNNNGTG 1 cut(s) 410
PdiI GCCGGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 157, 371, 424, 590
PflMI CCANNNNNTGG 1 cut(s) 517
PfoI TCCNGGA 1 cut(s) 323
PinAI ACCGGT 1 cut(s) 502
PkrI GCNGC 2 cut(s) 482, 681
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 264, 323
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 2 cut(s) 264, 323
PspPI GGNCC 1 cut(s) 356
PstI CTGCAG 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 410
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 66, 210
SatI GCNGC 2 cut(s) 481, 680
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 266, 325
SduI GDGCHC 4 cut(s) 59, 80, 167, 316
SfcI CTRYAG 2 cut(s) 494, 720
SgrAI CRCCGGYG 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 2 cut(s) 67, 757
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 264, 323
TaaI ACNGT 1 cut(s) 746
TaqI TCGA 2 cut(s) 155, 284
TasI AATT 2 cut(s) 67, 757
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 4 cut(s) 157, 371, 424, 590
Tru1I TTAA 2 cut(s) 66, 210
Tru9I TTAA 2 cut(s) 66, 210
TscAI CASTG 3 cut(s) 85, 498, 751
TseFI GTSAC 4 cut(s) 95, 498, 541, 735
TseI GCWGC 2 cut(s) 480, 679
Tsp45I GTSAC 4 cut(s) 95, 498, 541, 735
TspDTI ATGAA 5 cut(s) 17, 297, 437, 627, 645
TspRI CASTG 3 cut(s) 85, 498, 751
Van91I CCANNNNNTGG 1 cut(s) 517
XceI RCATGY 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.