RLG00000030181
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000197
Physical Location & Seq
Forward (+)
57126452 .. 57127307
856 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030181

Sequence Viewer

Length: 429 bp
ATGAACAGGGTCGGTTCTGATTTTCGTGTTTTGCGTGTTGGGTTTGGGACTTTGGGCAGCGTTGTTGCCTTGTTGGGGACTGAGACAGAGGGTCATGACATGGGAGTTATTTCGTATCCGAAGCAGGCCCAGGCACACGAAAGAGAGGAGTTGCTATTCCATCAACGTCAGCCTCAGGATGACCGCTGCTCTTCAGCACTGCGGTCACTGGCATCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATAGCACTAATGATGATTGTAGTGAGTTGCAATCACCATTTGGAGATGGTGATTCTTGTCTTCTAGACAGGAATGAAGTTTCAACCTGTGATGAAGATGAGACGGTGTGTGATGTGTTTCCACAGGTGAGAATGGACATGCTTTTTGTTGTTAAACATTTTGGCTATAAATCCCAAATACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

4.54

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 2 cut(s) 184, 202
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 75, 223
AgsI TTSAA 1 cut(s) 327
AhdI GACNNNNNGTC 1 cut(s) 90
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 223, 230
AluI AGCT 2 cut(s) 223, 230
Alw26I GTCTC 2 cut(s) 77, 338
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 57, 186
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 3 cut(s) 270, 305, 382
AxyI CCTNAGG 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 69, 173
BccI CCATC 2 cut(s) 168, 284
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 77, 338
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 425
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 2 cut(s) 58, 187
BlsI GCNGC 2 cut(s) 59, 188
Bme1390I CCNGG 1 cut(s) 131
BmeRI GACNNNNNGTC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 223
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 184, 212
BseLI CCNNNNNNNGG 2 cut(s) 75, 223
BseMII CTCAG 2 cut(s) 72, 188
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 69, 173
BshFI GGCC 1 cut(s) 128
BslFI GGGAC 2 cut(s) 61, 91
BslI CCNNNNNNNGG 2 cut(s) 75, 223
BsmAI GTCTC 2 cut(s) 77, 338
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 2 cut(s) 61, 91
BsnI GGCC 1 cut(s) 128
BspACI CCGC 2 cut(s) 184, 202
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 73, 187
BspHI TCATGA 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 81, 174
BstF5I GGATG 2 cut(s) 184, 212
BstMAI GTCTC 2 cut(s) 77, 338
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 425
BstV1I GCAGC 2 cut(s) 69, 173
BstV2I GAAGAC 1 cut(s) 296
Bsu36I CCTNAGG 1 cut(s) 174
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 184, 212
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 2 cut(s) 197, 206
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 127
CviAII CATG 3 cut(s) 95, 100, 382
CviJI RGCY 5 cut(s) 128, 172, 223, 230, 408
CviKI_1 RGCY 5 cut(s) 128, 172, 223, 230, 408
DdeI CTNAG 2 cut(s) 81, 174
DriI GACNNNNNGTC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 338
FaeI CATG 3 cut(s) 98, 103, 385
FaiI YATR 5 cut(s) 96, 101, 383, 411, 427
FaqI GGGAC 2 cut(s) 61, 91
FatI CATG 3 cut(s) 94, 99, 381
Fnu4HI GCNGC 2 cut(s) 58, 187
FokI GGATG 2 cut(s) 191, 199
Fsp4HI GCNGC 2 cut(s) 58, 187
FspBI CTAG 1 cut(s) 308
GluI GCNGC 2 cut(s) 58, 187
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 3 cut(s) 98, 103, 385
HinfI GANTC 1 cut(s) 296
HphI GGTGA 3 cut(s) 270, 305, 382
Hpy188I TCNGA 2 cut(s) 19, 120
Hpy188III TCNNGA 3 cut(s) 95, 176, 308
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 238, 274
HpyF3I CTNAG 2 cut(s) 81, 174
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 3 cut(s) 98, 103, 385
LguI GCTCTTC 1 cut(s) 196
LpnPI CCDG 9 cut(s) 110, 116, 143, 161, 194, 209, 298, 343, 353
Lsp1109I GCAGC 2 cut(s) 69, 173
LweI GCATC 1 cut(s) 221
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 204
MboII GAAGA 3 cut(s) 183, 296, 350
MnlI CCTC 3 cut(s) 82, 139, 183
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
NlaIII CATG 3 cut(s) 98, 103, 385
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 1 cut(s) 385
PagI TCATGA 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 2 cut(s) 59, 188
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 2 cut(s) 58, 187
Sau96I GGNCC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 131
SetI ASST 5 cut(s) 169, 225, 232, 332, 372
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 425
SsiI CCGC 2 cut(s) 184, 202
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 2 cut(s) 204, 213
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 2 cut(s) 57, 186
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 17, 333, 351
TspRI CASTG 2 cut(s) 204, 213
Van91I CCANNNNNTGG 1 cut(s) 223
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.