RchiOBHm_Chr1g0361411
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000197
Physical Location & Seq
Reverse (-)
53389183 .. 53390766
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58629

Sequence Viewer

Length: 657 bp
ATGGAGTGGTTCTTCTTCACCAGAAAGGCTTACAAGTACAACAAAAGCTCTCGCTCGAATCGGAGCACGAAGAAGATCCACTGGAAAATCACAGGGAAGGAGCGTGGGATTACAGCTCGACGATCCAAATCTGTTATCGGGAAGAAGAGGACATTGACTTTTTACCTGGGGCGTGCGCCGAAATCGAAGAAGACCAGCTGGGTTATTCATGGGCACTATCTGCCTGGAGATGGAGTTGCTTCGTATCCGAAGCAGGCCCAGGGTGACTTTGTTATCTGTCTCTTGAAGATTAGATCAGATAAGAAGGATTCTCCGGTCAGTAATGAAGGAGAGCCCAGAAGCACGAGTGTGTCTGAAATGAATCAAGAGGGAAATGAGAAGTTGCTATTCCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCAATGCAGTCACCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAATGTCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGATTCCTATCTATTAGATGGGAATGAAGTTTCAACCTGTGATGAAGATGAGACTGTGTATGATGTGTTTCCACAGCTACGTGATCTGCCCGAACAAAATCTAGATTCACTCTTTGGTGCACATCAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

218

Amino Acids

24.68

Weight (kDa)

6.53

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 70 1.1e-13 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 454
AclWI GGATC 2 cut(s) 70, 117
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 230, 454
AgeI ACCGGT 1 cut(s) 439
AgsI TTSAA 2 cut(s) 286, 558
AjnI CCWGG 3 cut(s) 165, 223, 258
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 6 cut(s) 48, 116, 198, 454, 461, 601
AluI AGCT 6 cut(s) 48, 116, 198, 454, 461, 601
Alw21I GWGCWC 2 cut(s) 68, 646
Alw26I GTCTC 2 cut(s) 284, 569
Alw44I GTGCAC 1 cut(s) 642
AlwI GGATC 2 cut(s) 70, 117
AlwNI CAGNNNCTG 1 cut(s) 406
AoxI GGCC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 417
AsiGI ACCGGT 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 4 cut(s) 10, 275, 429, 501
BaeGI GKGCMC 2 cut(s) 216, 646
BanII GRGCYC 1 cut(s) 336
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 68, 646
BbvCI CCTCAGC 2 cut(s) 399, 424
BbvI GCAGC 1 cut(s) 404
BccI CCATC 3 cut(s) 224, 399, 536
BciT130I CCWGG 3 cut(s) 167, 225, 260
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 284, 569
BfaI CTAG 1 cut(s) 626
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 3 cut(s) 167, 225, 260
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 3 cut(s) 167, 225, 260
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 2 cut(s) 399, 424
BsaAI YACGTR 1 cut(s) 605
BsaBI GATNNNNATC 2 cut(s) 127, 531
BsaJI CCNNGG 3 cut(s) 166, 258, 259
BsaWI WCCGGW 2 cut(s) 313, 439
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 404, 434
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 454
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 2 cut(s) 127, 531
BseBI CCWGG 3 cut(s) 167, 225, 260
BseDI CCNNGG 3 cut(s) 166, 258, 259
BseGI GGATG 1 cut(s) 415
BseJI GATNNNNATC 2 cut(s) 127, 531
BseLI CCNNNNNNNGG 2 cut(s) 230, 454
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 413, 438
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 412
BseSI GKGCMC 2 cut(s) 216, 646
BseXI GCAGC 1 cut(s) 404
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 257
BshTI ACCGGT 1 cut(s) 439
BsiHKAI GWGCWC 2 cut(s) 68, 646
BsiSI CCGG 2 cut(s) 314, 440
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 2 cut(s) 230, 454
BsmAI GTCTC 2 cut(s) 284, 569
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 4 cut(s) 68, 216, 336, 646
Bsp143I GATC 4 cut(s) 75, 122, 293, 607
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 412, 437
BspPI GGATC 2 cut(s) 70, 117
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 166, 258, 259
BssMI GATC 4 cut(s) 75, 122, 293, 607
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst2UI CCWGG 3 cut(s) 167, 225, 260
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 220
BstBAI YACGTR 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 174, 255
BstDEI CTNAG 2 cut(s) 399, 424
BstF5I GGATG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 4 cut(s) 78, 125, 296, 610
BstMAI GTCTC 2 cut(s) 284, 569
BstMBI GATC 4 cut(s) 75, 122, 293, 607
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 3 cut(s) 167, 225, 260
BstSCI CCNGG 3 cut(s) 165, 223, 258
BstSLI GKGCMC 2 cut(s) 216, 646
BstV1I GCAGC 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 2 cut(s) 174, 255
CaiI CAGNNNCTG 1 cut(s) 406
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 37
CspAI ACCGGT 1 cut(s) 439
CviAII CATG 1 cut(s) 209
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 399, 424
DpnI GATC 4 cut(s) 77, 124, 295, 609
DpnII GATC 4 cut(s) 75, 122, 293, 607
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 336
EcoRII CCWGG 3 cut(s) 165, 223, 258
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 210, 585, 655
FaqI GGGAC 1 cut(s) 430
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 418
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 1 cut(s) 257
HapII CCGG 2 cut(s) 314, 440
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 5 cut(s) 58, 308, 361, 527, 629
HpaII CCGG 2 cut(s) 314, 440
HphI GGTGA 4 cut(s) 10, 275, 429, 501
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 4 cut(s) 63, 249, 298, 355
Hpy188III TCNNGA 5 cut(s) 139, 283, 365, 407, 626
Hpy8I GTNNAC 1 cut(s) 644
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 3 cut(s) 91, 298, 320
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 4 cut(s) 433, 469, 505, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 399, 424
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 4 cut(s) 75, 122, 293, 607
LmnI GCTCC 3 cut(s) 63, 100, 425
Lsp1109I GCAGC 1 cut(s) 404
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 3 cut(s) 263, 435, 478
MalI GATC 4 cut(s) 77, 124, 295, 609
MboI GATC 4 cut(s) 75, 122, 293, 607
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 4 cut(s) 68, 216, 336, 646
MnlI CCTC 5 cut(s) 141, 361, 408, 414, 433
MroXI GAANNNNTTC 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 198
MspI CCGG 2 cut(s) 314, 440
MspR9I CCNGG 3 cut(s) 167, 225, 260
MvaI CCWGG 3 cut(s) 167, 225, 260
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 4 cut(s) 75, 122, 293, 607
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 3 cut(s) 263, 435, 478
OliI CACNNNNGTG 1 cut(s) 347
PasI CCCWGGG 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 5 cut(s) 58, 308, 361, 527, 629
PflMI CCANNNNNTGG 1 cut(s) 454
PinAI ACCGGT 1 cut(s) 439
PkrI GCNGC 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 605
Psp6I CCWGG 3 cut(s) 165, 223, 258
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 3 cut(s) 165, 223, 258
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 198
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 347
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 4 cut(s) 75, 122, 293, 607
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 3 cut(s) 167, 225, 260
SduI GDGCHC 4 cut(s) 68, 216, 336, 646
SgrAI CRCCGGYG 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 347
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 3 cut(s) 165, 223, 258
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 1 cut(s) 607
TaqI TCGA 3 cut(s) 56, 118, 185
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 5 cut(s) 58, 308, 361, 527, 629
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 3 cut(s) 263, 435, 478
TseI GCWGC 1 cut(s) 417
Tsp45I GTSAC 3 cut(s) 263, 435, 478
TspDTI ATGAA 5 cut(s) 197, 339, 374, 564, 582
TspRI CASTG 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 454
VneI GTGCAC 1 cut(s) 642
XbaI TCTAGA 1 cut(s) 625
XmnI GAANNNNTTC 1 cut(s) 462
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.