Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000197

Physical Location & Seq

Genomic Coordinates Forward (+)

14744916 .. 14748227

Gene Structure 3312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGGCTGCGTCATCCTCAAGACTTTGGGTGGGTTACCGATTCGACCCCAGAGAGCTTCCGGTGGGTTACCGATTCCACCCAACAGAGGAGGAGCTGGTCGGTTACTTCCTCAAGAAGAAGATACAAGGCCACGACTTCGACGACGTCATCCCGGAAATAGACATCTGCAACTACGAGCCTTGGGATTTGCCCGAGTTGTCACCGATGAGGCCGGATGATGAGGAGTGGTTCTACTTTAGTCGACCGGAGTACAAGTCCGGCAAGAAAGGGGGCCGGACCAACCGGACCACCCGTAGAGGGTTTTGGAAGATTACTGCGAAACAACCTGAAATAAAAGCTAGGGAGTCTAGGGCTGTTATTGGGAAGAAGAGGATTATGACTTTCTATACTGGGAAAGTTCGGAATGAGCAGAGGACCAGTTGGGGGATTCATGAGTACTACATACCTGAAACTCTGCTTCCTAATGCTGCTAGGCAGAGGGACTTTGTTCTCTGTCACTTGAAGAAAAAAGATGAGAGTACTAATATTGGAGCCTGTAATGAAGGTGAACCTAGCACTAACAACACATCTGATTTTCAGAATCTCATGACAGTTTTTAGTAGGCAAAGTAATCCAGAGGATTTGCAAATCACATTGCAGCAAAATACTCGGCCTGAAGAAATTTTGGCAGCACTCTTTCCCTCTCCTGAGTCACCTCAATCACATGATTATTTCTCCTCCATGCAGAGAGACAATATTCTGCATGCAAGTGCTGGTAGTGATGACCGCCTTGTGCTCCAATCTGCATTTGGACATGATGATTTGGAAGATGAGGAATTGTTTGCGGACTCACTTTTGGTTGACGAGGGTGCTTACTCCTTGGAAGAAACATCACGCACTACTCTTCTCAACCACTCAAGCAAGCCACAGTCGTTGCGTAAGGTGTACCATGAGGGTATACATCAACAGGTAAAGAAGCACTTTCCATTGTCTATTGAAGGAGCAGTTCAGTTGGACTGCCTAATGGACTTCACTGAATACAAAACTTCAATAAAGGTGAGGGCTGCAACTGCAGAGTCAGATGCATCAAGTATAAAACAAGGATATAATCCACAGAAAGTCAAGGTGAGAAAAGTAGAACTGCAGCTGAAAGAATACGAAAGCAAGTTGCCCGAGAAGCCTATGGCGCCTCCAAGCAATGATGAAGGAAAGGGTATGAAGCAGACACAAACTGGAACAACCATCAGCGATTGGAAGAGTTCGTTCATTGTCTGGAAGGAATCCCCATTAAGCCTTAAATCATATCCTCCAGACTCAATTCGTTTCCTGATGGGATTAGTTGAATATCATGTGTATGTGAAAGACTCTAAAAAGGAAGAAAACAGAGAAGATAGAGATGGTGGAGAAGAAGGAGAAGGTTGTCCCATTTGTGGTAACCTTGATCACTTTAACTCACAATGTCCATGGCAAGAAAATGTTCCACCAGGCGAACAAGTTGGCCCTCTCTATGACGTAGTTTGCAAGGGTTGTGGTGAGTTGGGACTTGCACACTGTTCTGAGGGCAACGTGCTGTCCTCAAGAGGTGTGGTCATTGTTATGATTTTGGTCATTAGTGGGAGGCCTGCCCCAACTACAAATATGCCCCTTACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

544

Amino Acids

61.76

Weight (kDa)

5.66

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	20 - 147	5.4e-35	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica	MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica	Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis	pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis	RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata	RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora	Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii	Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa	Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha	Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana	Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	1165
AccI	GTMKAC	2 cut(s)	241, 937
AciI	CCGC	2 cut(s)	766, 824
AcsI	RAATTY	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	675
AcyI	GRCGYC	2 cut(s)	144, 1166
AfaI	GTAC	4 cut(s)	251, 437, 520, 926
AfiI	CCNNNNNNNGG	4 cut(s)	85, 297, 423, 1409
AgsI	TTSAA	4 cut(s)	502, 977, 1029, 1322
AjnI	CCWGG	1 cut(s)	1462
AluBI	AGCT	4 cut(s)	55, 94, 338, 1126
AluI	AGCT	4 cut(s)	55, 94, 338, 1126
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	1 cut(s)	723
Ama87I	CYCGRG	2 cut(s)	191, 1151
AoxI	GGCC	6 cut(s)	127, 209, 271, 650, 1477, 1598
ApeKI	GCWGC	6 cut(s)	5, 467, 637, 668, 1043, 1123
ApoI	RAATTY	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	1 cut(s)	1168
AspS9I	GGNCC	5 cut(s)	271, 276, 285, 414, 1478
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	6 cut(s)	192, 557, 684, 1048, 1117, 1523
AvaI	CYCGRG	2 cut(s)	191, 1151
AvaII	GGWCC	3 cut(s)	276, 285, 414
BanI	GGYRCC	1 cut(s)	1165
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	5 cut(s)	454, 649, 680, 1030, 1135
BccI	CCATC	3 cut(s)	1229, 1303, 1370
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	1 cut(s)	1464
BclI	TGATCA	1 cut(s)	1420
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	4 cut(s)	339, 348, 471, 552
BfmI	CTRYAG	2 cut(s)	1050, 1121
BfoI	RGCGCY	1 cut(s)	1169
BisI	GCNGC	6 cut(s)	6, 468, 638, 669, 1044, 1124
BlsI	GCNGC	6 cut(s)	7, 469, 639, 670, 1045, 1125
BmcAI	AGTACT	2 cut(s)	437, 520
Bme1390I	CCNGG	2 cut(s)	152, 1464
Bme18I	GGWCC	3 cut(s)	276, 285, 414
BmeT110I	CYCGRG	2 cut(s)	191, 1151
BmgT120I	GGNCC	5 cut(s)	271, 276, 285, 414, 1478
BmiI	GGNNCC	3 cut(s)	272, 532, 1167
BmrFI	CCNGG	2 cut(s)	152, 1464
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	1051, 1073
BmuI	ACTGGG	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	1272
BpuEI	CTTGAG	3 cut(s)	95, 880, 1540
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	144, 1166
BsaJI	CCNNGG	3 cut(s)	179, 858, 1442
BsaWI	WCCGGW	3 cut(s)	58, 244, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 297, 423, 1409
Bse1I	ACTGG	3 cut(s)	394, 417, 1216
Bse3DI	GCAATG	2 cut(s)	632, 1183
BseBI	CCWGG	1 cut(s)	1464
BseDI	CCNNGG	3 cut(s)	179, 858, 1442
BseGI	GGATG	3 cut(s)	11, 147, 220
BseLI	CCNNNNNNNGG	4 cut(s)	85, 297, 423, 1409
BseMI	GCAATG	2 cut(s)	632, 1183
BseMII	CTCAG	2 cut(s)	678, 1527
BseNI	ACTGG	3 cut(s)	394, 417, 1216
BseRI	GAGGAG	4 cut(s)	101, 104, 236, 706
BseXI	GCAGC	5 cut(s)	454, 649, 680, 1030, 1135
Bsh1285I	CGRYCG	1 cut(s)	245
BshFI	GGCC	6 cut(s)	129, 211, 273, 652, 1479, 1600
BshNI	GGYRCC	1 cut(s)	1165
BsiEI	CGRYCG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	777
BsiHKCI	CYCGRG	2 cut(s)	191, 1151
BsiSI	CCGG	7 cut(s)	59, 152, 212, 245, 258, 274, 283
BslFI	GGGAC	3 cut(s)	494, 1386, 1533
BslI	CCNNNNNNNGG	4 cut(s)	85, 297, 423, 1409
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	3 cut(s)	494, 1386, 1533
BsnI	GGCC	6 cut(s)	129, 211, 273, 652, 1479, 1600
BsoBI	CYCGRG	2 cut(s)	191, 1151
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp143I	GATC	1 cut(s)	1420
Bsp19I	CCATGG	1 cut(s)	1442
BspACI	CCGC	2 cut(s)	766, 824
BspANI	GGCC	6 cut(s)	129, 211, 273, 652, 1479, 1600
BspCNI	CTCAG	2 cut(s)	679, 1528
BspHI	TCATGA	2 cut(s)	430, 585
BspLI	GGNNCC	3 cut(s)	272, 532, 1167
BspMAI	CTGCAG	2 cut(s)	1054, 1125
BspT107I	GGYRCC	1 cut(s)	1165
BsrDI	GCAATG	2 cut(s)	632, 1183
BsrI	ACTGG	3 cut(s)	394, 417, 1216
BssECI	CCNNGG	3 cut(s)	179, 858, 1442
BssMI	GATC	1 cut(s)	1420
BssNAI	GTATAC	1 cut(s)	938
BssNI	GRCGYC	2 cut(s)	144, 1166
BssT1I	CCWWGG	3 cut(s)	179, 858, 1442
Bst1107I	GTATAC	1 cut(s)	938
Bst2UI	CCWGG	1 cut(s)	1464
Bst4CI	ACNGT	3 cut(s)	592, 909, 1532
Bst6I	CTCTTC	3 cut(s)	362, 888, 1229
BstACI	GRCGYC	2 cut(s)	144, 1166
BstC8I	GCNNGC	3 cut(s)	744, 902, 1602
BstDEI	CTNAG	2 cut(s)	687, 1536
BstDSI	CCRYGG	1 cut(s)	1442
BstEII	GGTNACC	3 cut(s)	32, 65, 1412
BstF5I	GGATG	3 cut(s)	11, 147, 220
BstH2I	RGCGCY	1 cut(s)	1169
BstHHI	GCGC	1 cut(s)	1168
BstKTI	GATC	1 cut(s)	1423
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	1 cut(s)	1420
BstMCI	CGRYCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	3 cut(s)	1049, 1156, 1165
BstNI	CCWGG	1 cut(s)	1464
BstNSI	RCATGY	1 cut(s)	746
BstPI	GGTNACC	3 cut(s)	32, 65, 1412
BstSCI	CCNGG	2 cut(s)	150, 1462
BstSFI	CTRYAG	2 cut(s)	1050, 1121
BstV1I	GCAGC	5 cut(s)	454, 649, 680, 1030, 1135
BstZ17I	GTATAC	1 cut(s)	938
BsuRI	GGCC	6 cut(s)	129, 211, 273, 652, 1479, 1600
BtgI	CCRYGG	1 cut(s)	1442
BtsCI	GGATG	3 cut(s)	11, 147, 220
BtsIMutI	CAGTG	2 cut(s)	1011, 1528
Cac8I	GCNNGC	3 cut(s)	744, 902, 1602
CciI	TCATGA	2 cut(s)	430, 585
CfoI	GCGC	1 cut(s)	1168
Cfr13I	GGNCC	5 cut(s)	271, 276, 285, 414, 1478
Csp6I	GTAC	4 cut(s)	250, 436, 519, 925
CspCI	CAANNNNNGTGG	6 cut(s)	894, 929, 1489, 1524, 1545, 1580
CviAII	CATG	9 cut(s)	431, 586, 704, 721, 743, 794, 929, 1328, 1443
CviQI	GTAC	4 cut(s)	250, 436, 519, 925
DdeI	CTNAG	2 cut(s)	687, 1536
DinI	GGCGCC	1 cut(s)	1167
DpnI	GATC	1 cut(s)	1422
DpnII	GATC	1 cut(s)	1420
Eam1104I	CTCTTC	3 cut(s)	362, 888, 1229
EarI	CTCTTC	3 cut(s)	362, 888, 1229
Eco130I	CCWWGG	3 cut(s)	179, 858, 1442
Eco147I	AGGCCT	1 cut(s)	1600
Eco47I	GGWCC	3 cut(s)	276, 285, 414
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	2 cut(s)	191, 1151
Eco91I	GGTNACC	3 cut(s)	32, 65, 1412
EcoO65I	GGTNACC	3 cut(s)	32, 65, 1412
EcoRII	CCWGG	1 cut(s)	1462
EcoT14I	CCWWGG	3 cut(s)	179, 858, 1442
EcoT22I	ATGCAT	1 cut(s)	1066
EgeI	GGCGCC	1 cut(s)	1167
EheI	GGCGCC	1 cut(s)	1167
ErhI	CCWWGG	3 cut(s)	179, 858, 1442
FaeI	CATG	9 cut(s)	434, 589, 707, 724, 746, 797, 932, 1331, 1446
FalI	AAGNNNNNCTT	2 cut(s)	944, 976
FaqI	GGGAC	3 cut(s)	494, 1386, 1533
FatI	CATG	9 cut(s)	430, 585, 703, 720, 742, 793, 928, 1327, 1442
FbaI	TGATCA	1 cut(s)	1420
FblI	GTMKAC	2 cut(s)	241, 937
Fnu4HI	GCNGC	6 cut(s)	6, 468, 638, 669, 1044, 1124
FokI	GGATG	2 cut(s)	134, 227
Fsp4HI	GCNGC	6 cut(s)	6, 468, 638, 669, 1044, 1124
FspBI	CTAG	4 cut(s)	339, 348, 471, 552
GlaI	GCGC	1 cut(s)	1167
GluI	GCNGC	6 cut(s)	6, 468, 638, 669, 1044, 1124
GsuI	CTGGAG	1 cut(s)	1272
HaeII	RGCGCY	1 cut(s)	1169
HaeIII	GGCC	6 cut(s)	129, 211, 273, 652, 1479, 1600
HapII	CCGG	7 cut(s)	59, 152, 212, 245, 258, 274, 283
HhaI	GCGC	1 cut(s)	1168
Hin1I	GRCGYC	2 cut(s)	144, 1166
Hin1II	CATG	9 cut(s)	434, 589, 707, 724, 746, 797, 932, 1331, 1446
Hin6I	GCGC	1 cut(s)	1166
HinP1I	GCGC	1 cut(s)	1166
HincII	GTYRAC	2 cut(s)	242, 841
HindII	GTYRAC	2 cut(s)	242, 841
HpaII	CCGG	7 cut(s)	59, 152, 212, 245, 258, 274, 283
HphI	GGTGA	6 cut(s)	192, 557, 684, 1048, 1117, 1523
Hpy166II	GTNNAC	5 cut(s)	242, 548, 841, 925, 938
Hpy188I	TCNGA	5 cut(s)	402, 571, 579, 1060, 1537
Hpy8I	GTNNAC	5 cut(s)	242, 548, 841, 925, 938
Hpy99I	CGWCG	2 cut(s)	143, 146
HpyAV	CCTTC	6 cut(s)	536, 971, 1178, 1249, 1382, 1388
HpyCH4III	ACNGT	3 cut(s)	592, 909, 1532
HpyCH4IV	ACGT	3 cut(s)	144, 1491, 1545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1049, 1156, 1165
HpyF3I	CTNAG	2 cut(s)	687, 1536
HpySE526I	ACGT	3 cut(s)	144, 1491, 1545
Hsp92I	GRCGYC	2 cut(s)	144, 1166
Hsp92II	CATG	9 cut(s)	434, 589, 707, 724, 746, 797, 932, 1331, 1446
HspAI	GCGC	1 cut(s)	1166
KasI	GGCGCC	1 cut(s)	1165
Ksp22I	TGATCA	1 cut(s)	1420
Kzo9I	GATC	1 cut(s)	1420
LmnI	GCTCC	4 cut(s)	91, 530, 780, 980
Lsp1109I	GCAGC	5 cut(s)	454, 649, 680, 1030, 1135
LweI	GCATC	2 cut(s)	1051, 1073
MaeI	CTAG	4 cut(s)	339, 348, 471, 552
MaeII	ACGT	3 cut(s)	144, 1491, 1545
MaeIII	GTNAC	7 cut(s)	32, 65, 101, 198, 494, 690, 1412
MalI	GATC	1 cut(s)	1422
MboI	GATC	1 cut(s)	1420
MhlI	GDGCHC	1 cut(s)	777
MluCI	AATT	3 cut(s)	660, 815, 1296
Mly113I	GGCGCC	1 cut(s)	1166
MlyI	GAGTC	6 cut(s)	353, 698, 821, 1064, 1286, 1337
MmeI	TCCRAC	1 cut(s)	972
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	1 cut(s)	1455
MseI	TTAA	3 cut(s)	1268, 1275, 1428
MslI	CAYNNNNRTG	3 cut(s)	747, 1332, 1574
MspA1I	CMGCKG	1 cut(s)	1126
MspI	CCGG	7 cut(s)	59, 152, 212, 245, 258, 274, 283
MspR9I	CCNGG	2 cut(s)	152, 1464
MvaI	CCWGG	1 cut(s)	1464
MwoI	GCNNNNNNNGC	3 cut(s)	1049, 1156, 1165
NarI	GGCGCC	1 cut(s)	1166
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	1442
NdeII	GATC	1 cut(s)	1420
NlaIII	CATG	9 cut(s)	434, 589, 707, 724, 746, 797, 932, 1331, 1446
NlaIV	GGNNCC	3 cut(s)	272, 532, 1167
NmeAIII	GCCGAG	1 cut(s)	628
NmuCI	GTSAC	3 cut(s)	198, 494, 690
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	2 cut(s)	430, 585
PceI	AGGCCT	1 cut(s)	1600
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	5 cut(s)	39, 72, 427, 580, 1259
PflFI	GACNNNGTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	6 cut(s)	7, 469, 639, 670, 1045, 1125
PleI	GAGTC	6 cut(s)	352, 697, 821, 1063, 1286, 1337
PluTI	GGCGCC	1 cut(s)	1169
PpsI	GAGTC	6 cut(s)	352, 697, 821, 1063, 1286, 1337
Psp6I	CCWGG	1 cut(s)	1462
PspEI	GGTNACC	3 cut(s)	32, 65, 1412
PspGI	CCWGG	1 cut(s)	1462
PspN4I	GGNNCC	3 cut(s)	272, 532, 1167
PspPI	GGNCC	5 cut(s)	271, 276, 285, 414, 1478
PstI	CTGCAG	2 cut(s)	1054, 1125
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	1126
RsaI	GTAC	4 cut(s)	251, 437, 520, 926
RsaNI	GTAC	4 cut(s)	250, 436, 519, 925
RseI	CAYNNNNRTG	3 cut(s)	747, 1332, 1574
SalI	GTCGAC	1 cut(s)	240
SaqAI	TTAA	3 cut(s)	1268, 1275, 1428
SatI	GCNGC	6 cut(s)	6, 468, 638, 669, 1044, 1124
Sau3AI	GATC	1 cut(s)	1420
Sau96I	GGNCC	5 cut(s)	271, 276, 285, 414, 1478
ScaI	AGTACT	2 cut(s)	437, 520
SchI	GAGTC	6 cut(s)	353, 698, 821, 1064, 1286, 1337
ScrFI	CCNGG	2 cut(s)	152, 1464
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	2 cut(s)	1051, 1073
SfcI	CTRYAG	2 cut(s)	1050, 1121
SfoI	GGCGCC	1 cut(s)	1167
SinI	GGWCC	3 cut(s)	276, 285, 414
SmiMI	CAYNNNNRTG	3 cut(s)	747, 1332, 1574
SmlI	CTYRAG	4 cut(s)	16, 110, 895, 1555
SmoI	CTYRAG	4 cut(s)	16, 110, 895, 1555
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	3 cut(s)	660, 815, 1296
SseBI	AGGCCT	1 cut(s)	1600
SsiI	CCGC	2 cut(s)	766, 824
SspDI	GGCGCC	1 cut(s)	1165
SspI	AATATT	2 cut(s)	526, 736
SspMI	CTAG	4 cut(s)	339, 348, 471, 552
StuI	AGGCCT	1 cut(s)	1600
StyD4I	CCNGG	2 cut(s)	150, 1462
StyI	CCWWGG	3 cut(s)	179, 858, 1442
TaaI	ACNGT	3 cut(s)	592, 909, 1532
TaiI	ACGT	3 cut(s)	147, 1494, 1548
TaqI	TCGA	3 cut(s)	42, 138, 241
TasI	AATT	3 cut(s)	660, 815, 1296
TatI	WGTACW	3 cut(s)	249, 435, 518
TfiI	GAWTC	5 cut(s)	39, 72, 427, 580, 1259
Tru1I	TTAA	3 cut(s)	1268, 1275, 1428
Tru9I	TTAA	3 cut(s)	1268, 1275, 1428
TscAI	CASTG	2 cut(s)	1018, 1535
TseFI	GTSAC	3 cut(s)	198, 494, 690
TseI	GCWGC	6 cut(s)	5, 467, 637, 668, 1043, 1123
Tsp45I	GTSAC	3 cut(s)	198, 494, 690
TspDTI	ATGAA	5 cut(s)	419, 555, 1197, 1211, 1234
TspRI	CASTG	2 cut(s)	1018, 1535
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	3 cut(s)	276, 285, 414
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	785
XmiI	GTMKAC	2 cut(s)	241, 937
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	4 cut(s)	339, 348, 471, 552
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	2 cut(s)	437, 520
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.