pycom01g11610
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000197
Physical Location & Seq
Reverse (-)
12637805 .. 12638745
941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11610.2

Sequence Viewer

Length: 624 bp
ATGAGCAGTGGCAGCAGCAGCAGCAGCATGACAACTGAAGAAGGAGATGCAGAGAATGTGAATGTGATCCTACTACCTGGGTTCAGATTCTACCCCACTGATGAGTTGCTGGTCAGCTACTACTTGAGGAACAAGATACAGGGCGCCGACTCCCATTTCCGCCACCTCATCCCTGAAATCGATGTCTGCAAGTACGAGCCCTGCGATCTTCCTGCATTCTTCCCAGAAGTCCATGAGAAGGAGTGGTTCTTCTTTTGCCGGCTCGATTACAAGTACAACAACGGCACTCGCTGCAACCGGGCCACGGATCAAGGCTTTTACAAGATCACAGGAAAGGAGCGGGAGATCAGGGCTGAAGAATCCAAAGCTGTGGTTGGGAAGAAGAGGACTCTGACATTCTACGAAGGTCGTGTGCCGAAATCAAAGAAGACCGATTGGGTAGTCCATGAGTATTATCTCACAGAAACTGAGGTGGGTTCTAAACCCACCAAGCAGAAGGACTTTGTCCTCTGCCGCCTGAATAACAGGTCAGCTAGTTATAAGAAGCCGAAGGGTGGTCCGATCCACGGCGAATTAGCTGATTCGGGAGCGAATTCTGAAGATCGATCAAGCTGTTGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

208

Amino Acids

23.71

Weight (kDa)

8.08

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 340
AciI CCGC 3 cut(s) 160, 340, 514
AclWI GGATC 3 cut(s) 61, 315, 556
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 3 cut(s) 57, 375, 618
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 194, 275
AfiI CCNNNNNNNGG 4 cut(s) 238, 304, 554, 566
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 117, 368, 533, 578, 612
AluI AGCT 5 cut(s) 117, 368, 533, 578, 612
AlwI GGATC 3 cut(s) 61, 315, 556
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 1 cut(s) 300
ApeKI GCWGC 6 cut(s) 12, 15, 18, 21, 24, 291
ApoI RAATTY 1 cut(s) 592
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 300, 557
AsuC2I CCSGG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 557
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 434
BbvI GCAGC 6 cut(s) 24, 27, 30, 33, 36, 278
BceAI ACGGC 2 cut(s) 298, 583
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 299
BfaI CTAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 7 cut(s) 13, 16, 19, 22, 25, 292, 514
BlsI GCNGC 7 cut(s) 14, 17, 20, 23, 26, 293, 515
Bme1390I CCNGG 2 cut(s) 78, 299
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 300, 557
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 78, 299
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 299
Bsa29I ATCGAT 2 cut(s) 180, 604
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 77, 303, 565
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 304, 554, 566
Bse118I RCCGGY 1 cut(s) 258
BseBI CCWGG 1 cut(s) 78
BseCI ATCGAT 2 cut(s) 180, 604
BseDI CCNNGG 3 cut(s) 77, 303, 565
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 4 cut(s) 238, 304, 554, 566
BseMII CTCAG 1 cut(s) 459
BseXI GCAGC 6 cut(s) 24, 27, 30, 33, 36, 278
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 143
BshVI ATCGAT 2 cut(s) 180, 604
BsiSI CCGG 2 cut(s) 259, 298
BslI CCNNNNNNNGG 4 cut(s) 238, 304, 554, 566
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
BspACI CCGC 3 cut(s) 160, 340, 514
BspANI GGCC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 460
BspDI ATCGAT 2 cut(s) 180, 604
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 3 cut(s) 61, 315, 556
BspT107I GGYRCC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 340
BsrFI RCCGGY 1 cut(s) 258
BssAI RCCGGY 1 cut(s) 258
BssECI CCNNGG 3 cut(s) 77, 303, 565
BssMI GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
BssNI GRCGYC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 377
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 2 cut(s) 303, 565
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 8 cut(s) 69, 208, 310, 327, 348, 564, 604, 608
BstMBI GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
BstMWI GCNNNNNNNGC 5 cut(s) 12, 18, 21, 24, 291
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 76, 297
BstV1I GCAGC 6 cut(s) 24, 27, 30, 33, 36, 278
BstV2I GAAGAC 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 370
Bsu15I ATCGAT 2 cut(s) 180, 604
BsuRI GGCC 1 cut(s) 302
BsuTUI ATCGAT 2 cut(s) 180, 604
BtgI CCRYGG 2 cut(s) 303, 565
BtsCI GGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 13, 96
Cac8I GCNNGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 300, 557
ClaI ATCGAT 2 cut(s) 180, 604
Csp6I GTAC 2 cut(s) 193, 274
CviAII CATG 3 cut(s) 28, 233, 446
CviQI GTAC 2 cut(s) 193, 274
DdeI CTNAG 1 cut(s) 468
DinI GGCGCC 1 cut(s) 145
DpnI GATC 8 cut(s) 68, 207, 309, 326, 347, 563, 603, 607
DpnII GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 3 cut(s) 57, 375, 618
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 201
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
FaeI CATG 3 cut(s) 31, 236, 449
FaiI YATR 4 cut(s) 29, 234, 447, 540
FatI CATG 3 cut(s) 27, 232, 445
FauI CCCGC 1 cut(s) 333
Fnu4HI GCNGC 7 cut(s) 13, 16, 19, 22, 25, 292, 514
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 7 cut(s) 13, 16, 19, 22, 25, 292, 514
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 145
GluI GCNGC 7 cut(s) 13, 16, 19, 22, 25, 292, 514
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 302
HapII CCGG 2 cut(s) 259, 298
HhaI GCGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 3 cut(s) 31, 236, 449
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 5 cut(s) 87, 149, 359, 388, 581
HpaII CCGG 2 cut(s) 259, 298
Hpy188I TCNGA 4 cut(s) 86, 393, 561, 598
Hpy188III TCNNGA 1 cut(s) 585
HpyAV CCTTC 5 cut(s) 35, 232, 398, 490, 544
HpyCH4V TGCA 4 cut(s) 50, 189, 215, 294
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 18, 21, 24, 291
HpyF3I CTNAG 1 cut(s) 468
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 3 cut(s) 31, 236, 449
HspAI GCGC 1 cut(s) 144
KasI GGCGCC 1 cut(s) 143
KroI GCCGGC 1 cut(s) 258
KroNI GCCGGC 1 cut(s) 260
Kzo9I GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
LmnI GCTCC 2 cut(s) 337, 587
Lsp1109I GCAGC 6 cut(s) 24, 27, 30, 33, 36, 278
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 534
MalI GATC 8 cut(s) 68, 207, 309, 326, 347, 563, 603, 607
MbiI CCGCTC 1 cut(s) 340
MboI GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
MboII GAAGA 9 cut(s) 50, 200, 211, 241, 368, 391, 394, 439, 611
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 2 cut(s) 572, 592
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 2 cut(s) 143, 382
MnlI CCTC 5 cut(s) 120, 176, 378, 463, 518
MroNI GCCGGC 1 cut(s) 258
MspI CCGG 2 cut(s) 259, 298
MspR9I CCNGG 2 cut(s) 78, 299
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 5 cut(s) 12, 18, 21, 24, 291
NaeI GCCGGC 1 cut(s) 260
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 1 cut(s) 299
NdeII GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
NgoMIV GCCGGC 1 cut(s) 258
NlaIII CATG 3 cut(s) 31, 236, 449
NlaIV GGNNCC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 215
PdiI GCCGGC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 87, 359, 581
PflFI GACNNNGTC 1 cut(s) 503
PkrI GCNGC 7 cut(s) 14, 17, 20, 23, 26, 293, 515
PleI GAGTC 2 cut(s) 143, 382
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 2 cut(s) 143, 382
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 300, 557
PstNI CAGNNNCTG 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 2 cut(s) 194, 275
RsaNI GTAC 2 cut(s) 193, 274
SatI GCNGC 7 cut(s) 13, 16, 19, 22, 25, 292, 514
Sau3AI GATC 8 cut(s) 66, 205, 307, 324, 345, 561, 601, 605
Sau96I GGNCC 2 cut(s) 300, 557
SchI GAGTC 2 cut(s) 143, 382
ScrFI CCNGG 2 cut(s) 78, 299
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 1 cut(s) 37
SfoI GGCGCC 1 cut(s) 145
SinI GGWCC 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 572, 592
SsiI CCGC 3 cut(s) 160, 340, 514
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 76, 297
TaqI TCGA 3 cut(s) 180, 264, 604
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 572, 592
TatI WGTACW 1 cut(s) 273
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 3 cut(s) 87, 359, 581
TscAI CASTG 2 cut(s) 13, 103
TseI GCWGC 6 cut(s) 12, 15, 18, 21, 24, 291
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 13, 103
Tth111I GACNNNGTC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 1 cut(s) 592
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.