Rmu_sc0002119.1_g000002
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002119.1
OG0000197
Physical Location & Seq
Forward (+)
7722 .. 10218
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002119.1_g000002.1.cds

Sequence Viewer

Length: 786 bp
atgcagtcggggtggtttcagaagtacacatggatcaacaacatagtaatattagaaatagacctctgcaaatacgagccggctgagctccctgcagctttgttgggcactgagacagaggctcctgacatggagtggttcttcttcaccagaaaggcttacaagtacaacaaaagctctcgctcgaatcggagcacgaagaagggatactggaaaatcacagggaacgagcgtgggattacagctcgacgatccaaatctgttatcgggaagaagaggacattgactttttaccaggggcgtgcgccgaaatcgaagaagaccagctgggttattcatgggcactatcttcctggagatggagttgcttcgtatccgaagcaggcccagggtgactttgttatctgtctcttgaagattagatcagataagaaggattctccggtcagtaatgaaggagagcccagaagcacgagtgtgtctgaaatgaatcaagagggaaatgagaagttgctattccatcaacctcagcctctggatgactgctgctcctcagcactgcagtcaccggtgtcccaagagctggaagctgttctgcaaaccaatgtcactaatgatgattgtaatgagttgcaatcaccatttggagatagtgattcctatctattagatgggaatgaagtttcaacctgtgatgaagatgagactgtgtatgatgtgtttccacagctatgtgatcctccagaacaaaatctggattcacgctttggtccacatcagccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

261

Amino Acids

29.52

Weight (kDa)

5.25

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000197)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18010 FvH4_7g18010 FvH4_7g18021 FvH4_7g18070 FvH4_7g18070 FvH4_7g18200 FvH4_7g18250
malus_domestica MD01G1092200.v1.1 MD01G1092500.v1.1 MD01G1092600.v1.1 MD01G1092900.v1.1 MD01G1093000.v1.1 MD01G1093200.v1.1 MD01G1093500.v1.1 MD01G1093700.v1.1 MD01G1093800.v1.1 MD01G1093900.v1.1 MD01G1094000.v1.1 MD01G1094200.v1.1 MD01G1094400.v1.1 MD01G1094500.v1.1 MD01G1094700.v1.1 MD01G1094800.v1.1 MD01G1095100.v1.1 MD07G1162700.v1.1 MD07G1163200.v1.1 MD07G1163400.v1.1 MD07G1163700.v1.1 MD07G1164000.v1.1 MD10G1186100.v1.1
prunus_persica Prupe.2G201200_v2.0.a1 Prupe.2G201200_v2.0.a1 Prupe.2G201300_v2.0.a1 Prupe.2G201800_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202000_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202500_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202700_v2.0.a1 Prupe.2G202800_v2.0.a1 Prupe.2G202900_v2.0.a1 Prupe.2G203000_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204700_v2.0.a1 Prupe.2G204900_v2.0.a1
pyrus_communis pycom01g11610 pycom01g11650 pycom01g11670 pycom01g11680 pycom01g11700 pycom01g11710 pycom01g11720 pycom01g11730 pycom07g15770 pycom07g15860 pycom07g15870 pycom07g15890 pycom07g15900 pycom07g15920
rosa_chinensis RchiOBHm_Chr1g0333731 RchiOBHm_Chr1g0361411 RchiOBHm_Chr1g0361501 RchiOBHm_Chr1g0361551 RchiOBHm_Chr1g0361631 RchiOBHm_Chr1g0361691 RchiOBHm_Chr1g0361701
rosa_laevigata RLG00000011640 RLG00000014882 RLG00000027709 RLG00000027713 RLG00000027717 RLG00000027719 RLG00000029532 RLG00000030171 RLG00000030174 RLG00000030177 RLG00000030181 RLG00000030186
rosa_multiflora Rmu_co8135790.1_g000001 Rmu_co8371689.1_g000001 Rmu_co8391943.1_g000001 Rmu_co8469521.1_g000001 Rmu_co8502503.1_g000002 Rmu_sc0001034.1_g000001 Rmu_sc0002119.1_g000002 Rmu_sc0002119.1_g000009 Rmu_sc0002119.1_g000019 Rmu_sc0003426.1_g000005 Rmu_sc0003693.1_g000010 Rmu_sc0003704.1_g000007 Rmu_sc0006101.1_g000005 Rmu_sc0006417.1_g000006 Rmu_sc0007217.1_g000012 Rmu_sc0010384.1_g000001 Rmu_sc0011258.1_g000003 Rmu_sc0017253.1_g000002 Rmu_ssc0000062.1_g000022
rosa_roxburghii Rroxscaffold_159G00432930 Rroxscaffold_159G00433040 Rroxscaffold_159G00433060 Rroxscaffold_4G00294780 Rroxscaffold_4G00294810 Rroxscaffold_4G00294870 Rroxscaffold_4G00294930 Rroxscaffold_4G00294950 Rroxscaffold_4G00317240 Rroxscaffold_4G00325190 Rroxscaffold_4G00325210
rosa_rugosa Rorug01G0047400 Rorug01G0047800 Rorug01G0048100 Rorug01G0048100 Rorug01G0111500 Rorug01G0111500 Rorug01G0289800 Rorug01G0290300 Rorug01G0290700 Rorug01G0290900
rosa_samantha Rh1AG063000 Rh1AG064000 Rh1AG064400 Rh1AG133700 Rh1AG300300 Rh1AG300900 Rh1AG301000 Rh1AG301100 Rh1BG263800 Rh1BG264000 Rh1BG264100 Rh1CG281800 Rh1CG282100 Rh1CG282200 Rh1DG294000 Rh1DG294100 Rh5BG200600
rosa_wichuraiana Rw1G005400 Rw1G011170 Rw1G026570 Rw1G026580 Rw1G026610 Rw1G026640 Rw1G026670 Rw1G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AclWI GGATC 3 cut(s) 41, 246, 731
AfaI GTAC 2 cut(s) 26, 167
AfiI CCNNNNNNNGG 2 cut(s) 359, 583
AgeI ACCGGT 1 cut(s) 568
AgsI TTSAA 2 cut(s) 415, 687
AjnI CCWGG 3 cut(s) 294, 352, 387
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 8 cut(s) 88, 98, 177, 245, 327, 583, 590, 730
AluI AGCT 8 cut(s) 88, 98, 177, 245, 327, 583, 590, 730
Alw21I GWGCWC 2 cut(s) 90, 197
Alw26I GTCTC 3 cut(s) 107, 413, 698
AlwI GGATC 3 cut(s) 41, 246, 731
AlwNI CAGNNNCTG 1 cut(s) 535
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 95, 546
AsiGI ACCGGT 1 cut(s) 568
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 2 cut(s) 385, 770
AsuHPI GGTGA 4 cut(s) 139, 404, 558, 630
AvaII GGWCC 1 cut(s) 770
BaeGI GKGCMC 2 cut(s) 110, 345
BanII GRGCYC 2 cut(s) 90, 465
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BauI CACGAG 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 90, 197
BbvCI CCTCAGC 2 cut(s) 528, 553
BbvI GCAGC 2 cut(s) 107, 533
BccI CCATC 3 cut(s) 353, 528, 665
BciT130I CCWGG 3 cut(s) 296, 354, 389
BciVI GTATCC 2 cut(s) 200, 384
BcoDI GTCTC 3 cut(s) 107, 413, 698
BfmI CTRYAG 2 cut(s) 93, 560
BfuI GTATCC 2 cut(s) 200, 384
BisI GCNGC 2 cut(s) 96, 547
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 2 cut(s) 97, 548
Bme1390I CCNGG 3 cut(s) 296, 354, 389
Bme18I GGWCC 1 cut(s) 770
BmgT120I GGNCC 2 cut(s) 385, 770
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 3 cut(s) 296, 354, 389
BpiI GAAGAC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 375, 726
Bpu10I CCTNAGC 2 cut(s) 528, 553
Bpu1102I GCTNAGC 1 cut(s) 84
BsaBI GATNNNNATC 2 cut(s) 256, 660
BsaJI CCNNGG 3 cut(s) 295, 387, 388
BsaWI WCCGGW 2 cut(s) 442, 568
BsaXI ACNNNNNCTCC 6 cut(s) 106, 136, 348, 378, 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 583
Bse118I RCCGGY 2 cut(s) 79, 568
Bse1I ACTGG 1 cut(s) 215
Bse8I GATNNNNATC 2 cut(s) 256, 660
BseBI CCWGG 3 cut(s) 296, 354, 389
BseDI CCNNGG 3 cut(s) 295, 387, 388
BseGI GGATG 1 cut(s) 544
BseJI GATNNNNATC 2 cut(s) 256, 660
BseLI CCNNNNNNNGG 2 cut(s) 359, 583
BseMII CTCAG 4 cut(s) 75, 102, 542, 567
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 541
BseSI GKGCMC 2 cut(s) 110, 345
BseXI GCAGC 2 cut(s) 107, 533
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 386
BshTI ACCGGT 1 cut(s) 568
BsiHKAI GWGCWC 2 cut(s) 90, 197
BsiSI CCGG 3 cut(s) 80, 443, 569
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 359, 583
BsmAI GTCTC 3 cut(s) 107, 413, 698
BsmFI GGGAC 1 cut(s) 559
BsnI GGCC 1 cut(s) 386
Bsp1286I GDGCHC 5 cut(s) 90, 110, 197, 345, 465
Bsp143I GATC 4 cut(s) 33, 251, 422, 736
Bsp1720I GCTNAGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 4 cut(s) 76, 103, 541, 566
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 2 cut(s) 97, 564
BspPI GGATC 3 cut(s) 41, 246, 731
BsrFI RCCGGY 2 cut(s) 79, 568
BsrI ACTGG 1 cut(s) 215
BssAI RCCGGY 2 cut(s) 79, 568
BssECI CCNNGG 3 cut(s) 295, 387, 388
BssMI GATC 4 cut(s) 33, 251, 422, 736
BssSI CACGAG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 472
Bst2UI CCWGG 3 cut(s) 296, 354, 389
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 3 cut(s) 81, 303, 384
BstDEI CTNAG 4 cut(s) 84, 111, 528, 553
BstF5I GGATG 1 cut(s) 544
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 4 cut(s) 36, 254, 425, 739
BstMAI GTCTC 3 cut(s) 107, 413, 698
BstMBI GATC 4 cut(s) 33, 251, 422, 736
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 3 cut(s) 296, 354, 389
BstSCI CCNGG 3 cut(s) 294, 352, 387
BstSFI CTRYAG 2 cut(s) 93, 560
BstSLI GKGCMC 2 cut(s) 110, 345
BstV1I GCAGC 2 cut(s) 107, 533
BstV2I GAAGAC 1 cut(s) 326
BsuI GTATCC 2 cut(s) 200, 384
BsuRI GGCC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 544
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 2 cut(s) 108, 557
Cac8I GCNNGC 3 cut(s) 81, 303, 384
CaiI CAGNNNCTG 1 cut(s) 535
CfoI GCGC 1 cut(s) 307
Cfr10I RCCGGY 2 cut(s) 79, 568
Cfr13I GGNCC 2 cut(s) 385, 770
Csp6I GTAC 2 cut(s) 25, 166
CspAI ACCGGT 1 cut(s) 568
CviAII CATG 3 cut(s) 30, 130, 338
CviQI GTAC 2 cut(s) 25, 166
DdeI CTNAG 4 cut(s) 84, 111, 528, 553
DpnI GATC 4 cut(s) 35, 253, 424, 738
DpnII GATC 4 cut(s) 33, 251, 422, 736
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 90, 465
Eco47I GGWCC 1 cut(s) 770
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 3 cut(s) 294, 352, 387
EcoT38I GRGCYC 2 cut(s) 90, 465
FaeI CATG 3 cut(s) 33, 133, 341
FaiI YATR 7 cut(s) 31, 44, 131, 339, 714, 733, 784
FaqI GGGAC 1 cut(s) 559
FatI CATG 3 cut(s) 29, 129, 337
Fnu4HI GCNGC 2 cut(s) 96, 547
FokI GGATG 1 cut(s) 551
FriOI GRGCYC 2 cut(s) 90, 465
Fsp4HI GCNGC 2 cut(s) 96, 547
GlaI GCGC 1 cut(s) 306
GluI GCNGC 2 cut(s) 96, 547
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 2 cut(s) 375, 726
HaeIII GGCC 1 cut(s) 386
HapII CCGG 3 cut(s) 80, 443, 569
HhaI GCGC 1 cut(s) 307
Hin1II CATG 3 cut(s) 33, 133, 341
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 5 cut(s) 187, 437, 490, 656, 758
HpaII CCGG 3 cut(s) 80, 443, 569
HphI GGTGA 4 cut(s) 139, 404, 558, 630
Hpy166II GTNNAC 2 cut(s) 27, 773
Hpy188I TCNGA 5 cut(s) 21, 192, 378, 427, 484
Hpy188III TCNNGA 7 cut(s) 125, 268, 412, 494, 536, 743, 755
Hpy8I GTNNAC 2 cut(s) 27, 773
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 3 cut(s) 196, 427, 449
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4V TGCA 6 cut(s) 4, 69, 95, 562, 598, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 4 cut(s) 84, 111, 528, 553
Hsp92II CATG 3 cut(s) 33, 133, 341
HspAI GCGC 1 cut(s) 305
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 4 cut(s) 33, 251, 422, 736
LmnI GCTCC 4 cut(s) 93, 127, 192, 554
Lsp1109I GCAGC 2 cut(s) 107, 533
MaeIII GTNAC 3 cut(s) 392, 564, 607
MalI GATC 4 cut(s) 35, 253, 424, 738
MboI GATC 4 cut(s) 33, 251, 422, 736
MhlI GDGCHC 5 cut(s) 90, 110, 197, 345, 465
MnlI CCTC 8 cut(s) 74, 112, 270, 490, 537, 543, 562, 750
MroNI GCCGGC 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 476, 730
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 3 cut(s) 80, 443, 569
MspR9I CCNGG 3 cut(s) 296, 354, 389
MvaI CCWGG 3 cut(s) 296, 354, 389
MwoI GCNNNNNNNGC 1 cut(s) 85
NaeI GCCGGC 1 cut(s) 81
NdeII GATC 4 cut(s) 33, 251, 422, 736
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 3 cut(s) 33, 133, 341
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 3 cut(s) 392, 564, 607
OliI CACNNNNGTG 1 cut(s) 476
PasI CCCWGGG 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 5 cut(s) 187, 437, 490, 656, 758
PflMI CCANNNNNTGG 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 352
PinAI ACCGGT 1 cut(s) 568
PkrI GCNGC 2 cut(s) 97, 548
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 294, 352, 387
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 3 cut(s) 294, 352, 387
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 385, 770
PstI CTGCAG 2 cut(s) 97, 564
PstNI CAGNNNCTG 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 327
RsaI GTAC 2 cut(s) 26, 167
RsaNI GTAC 2 cut(s) 25, 166
RseI CAYNNNNRTG 2 cut(s) 476, 730
SacI GAGCTC 1 cut(s) 90
SatI GCNGC 2 cut(s) 96, 547
Sau3AI GATC 4 cut(s) 33, 251, 422, 736
Sau96I GGNCC 2 cut(s) 385, 770
ScrFI CCNGG 3 cut(s) 296, 354, 389
SduI GDGCHC 5 cut(s) 90, 110, 197, 345, 465
SfcI CTRYAG 2 cut(s) 93, 560
SgrAI CRCCGGYG 1 cut(s) 568
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 2 cut(s) 476, 730
SspI AATATT 1 cut(s) 51
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 294, 352, 387
TaaI ACNGT 1 cut(s) 709
TaqI TCGA 3 cut(s) 185, 247, 314
TatI WGTACW 2 cut(s) 24, 165
TfiI GAWTC 5 cut(s) 187, 437, 490, 656, 758
TscAI CASTG 2 cut(s) 115, 564
TseFI GTSAC 3 cut(s) 392, 564, 607
TseI GCWGC 2 cut(s) 95, 546
Tsp45I GTSAC 3 cut(s) 392, 564, 607
TspDTI ATGAA 5 cut(s) 326, 468, 503, 693, 711
TspRI CASTG 2 cut(s) 115, 564
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.