Rmu_co8302323.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8302323.1
OG0000639
Physical Location & Seq
Reverse (-)
2 .. 898
897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8302323.1_g000001.1.cds

Sequence Viewer

Length: 791 bp
agtcttgggacagtcagggcaagtggtacttcttcactccgcgtgaatacaagtaccctaacagcagacgctccaacaggactacaagggaagggttctggaagatcacaggcaaggacagagacatcaaggcccttcgctccaaagctgtgattgagagaaggaggaccttgaccttctacaaacgtggagtgtcgaaatcccagaagactggctgggtcattcatgagtattatctcattcaggcacattctgatcctcctaagcagataggggactttgtagtctgttgcttgaagtataagtcagacaactctgatcatgataaggatgccccattctgcgatcgaggtagcagcagctgcagtatggcctccaatgttgaaaatcaagctgaagaaaattgggcatccattaagcaggttaacgttgttccaattcccaatggaaatgatgatgaagctgaaactggtggtggtacgattacagaagaagaggaatacctggctttaaaggagctggaagatgctcttcaaattcccattggcaatcctcatgacttccaaggcatgcaaactgatccttgtcatatagatgagaatgatctttcaacctctgttgaaggccgacctgataaaagcaattcatctgatatgactgaagagctactagatgacccacaaaatctggatttactctttcatccgcctgcgccacctcaactgcatcagctacatcagtcacccatgtataccaccaatgtccataatgatgaatgtcgtaaaagaaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

263

Amino Acids

30.12

Weight (kDa)

5.31

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
Acc36I ACCTGC 1 cut(s) 411
AccI GTMKAC 1 cut(s) 751
AccII CGCG 1 cut(s) 42
AciI CCGC 2 cut(s) 40, 706
AclI AACGTT 1 cut(s) 428
AclWI GGATC 2 cut(s) 250, 574
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 416, 680
AfaI GTAC 3 cut(s) 28, 55, 480
AgsI TTSAA 5 cut(s) 297, 385, 535, 611, 622
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 7 cut(s) 148, 362, 394, 463, 519, 666, 732
AluI AGCT 7 cut(s) 148, 362, 394, 463, 519, 666, 732
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 250, 574
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 3 cut(s) 131, 371, 624
ApeKI GCWGC 3 cut(s) 356, 359, 362
ApoI RAATTY 1 cut(s) 536
AspLEI GCGC 1 cut(s) 714
AspS9I GGNCC 2 cut(s) 132, 167
AsuHPI GGTGA 1 cut(s) 734
AvaII GGWCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 349, 368, 371
BciT130I CCWGG 1 cut(s) 505
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 670
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 1 cut(s) 411
BisI GCNGC 3 cut(s) 357, 360, 363
BlsI GCNGC 3 cut(s) 358, 361, 364
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 132, 167
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 4 cut(s) 321, 418, 516, 735
BpiI GAAGAC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 564
Bse1I ACTGG 2 cut(s) 216, 474
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 564
BseGI GGATG 3 cut(s) 336, 409, 702
BseNI ACTGG 2 cut(s) 216, 474
BseXI GCAGC 3 cut(s) 349, 368, 371
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 3 cut(s) 133, 373, 626
BsiEI CGRYCG 1 cut(s) 348
BslFI GGGAC 2 cut(s) 22, 289
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 2 cut(s) 22, 289
BsnI GGCC 3 cut(s) 133, 373, 626
Bsp143I GATC 6 cut(s) 104, 255, 318, 345, 579, 603
BspACI CCGC 2 cut(s) 40, 706
BspANI GGCC 3 cut(s) 133, 373, 626
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 3 cut(s) 225, 321, 555
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 411
BspPI GGATC 2 cut(s) 250, 574
BspQI GCTCTTC 2 cut(s) 536, 656
BsrI ACTGG 2 cut(s) 216, 474
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 6 cut(s) 104, 255, 318, 345, 579, 603
BssNAI GTATAC 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 3 cut(s) 488, 536, 656
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 571, 710
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 3 cut(s) 336, 409, 702
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 6 cut(s) 107, 258, 321, 348, 582, 606
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 6 cut(s) 104, 255, 318, 345, 579, 603
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 349, 368, 371
BstV2I GAAGAC 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 211
BstZ17I GTATAC 1 cut(s) 752
BsuRI GGCC 3 cut(s) 133, 373, 626
BtsCI GGATG 3 cut(s) 336, 409, 702
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 2 cut(s) 571, 710
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 3 cut(s) 225, 321, 555
CfoI GCGC 1 cut(s) 714
Cfr13I GGNCC 2 cut(s) 132, 167
CseI GACGC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 27, 54, 479
CviAII CATG 5 cut(s) 226, 322, 556, 570, 747
CviQI GTAC 3 cut(s) 27, 54, 479
DdeI CTNAG 1 cut(s) 263
DpnI GATC 6 cut(s) 106, 257, 320, 347, 581, 605
DpnII GATC 6 cut(s) 104, 255, 318, 345, 579, 603
DraI TTTAAA 1 cut(s) 512
DrdI GACNNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 488, 536, 656
EarI CTCTTC 3 cut(s) 488, 536, 656
EciI GGCGGA 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 416, 680
EcoO109I RGGNCCY 2 cut(s) 132, 167
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 5 cut(s) 229, 325, 559, 573, 750
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 515, 547
FaqI GGGAC 2 cut(s) 22, 289
FatI CATG 5 cut(s) 225, 321, 555, 569, 746
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 3 cut(s) 357, 360, 363
FokI GGATG 3 cut(s) 343, 396, 689
Fsp4HI GCNGC 3 cut(s) 357, 360, 363
FspBI CTAG 1 cut(s) 670
GlaI GCGC 1 cut(s) 713
GluI GCNGC 3 cut(s) 357, 360, 363
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 3 cut(s) 133, 373, 626
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 714
Hin1II CATG 5 cut(s) 229, 325, 559, 573, 750
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HpaI GTTAAC 1 cut(s) 426
HphI GGTGA 1 cut(s) 734
Hpy166II GTNNAC 2 cut(s) 426, 752
Hpy188I TCNGA 4 cut(s) 255, 309, 318, 651
Hpy188III TCNNGA 5 cut(s) 99, 226, 322, 556, 688
Hpy8I GTNNAC 2 cut(s) 426, 752
HpyAV CCTTC 5 cut(s) 85, 145, 155, 186, 616
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 186, 428
HpyCH4V TGCA 3 cut(s) 365, 573, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 263
HpySE526I ACGT 2 cut(s) 186, 428
Hsp92II CATG 5 cut(s) 229, 325, 559, 573, 750
HspAI GCGC 1 cut(s) 712
Ksp22I TGATCA 1 cut(s) 318
KspAI GTTAAC 1 cut(s) 426
Kzo9I GATC 6 cut(s) 104, 255, 318, 345, 579, 603
LguI GCTCTTC 2 cut(s) 536, 656
LmnI GCTCC 3 cut(s) 76, 145, 516
Lsp1109I GCAGC 3 cut(s) 349, 368, 371
LweI GCATC 4 cut(s) 321, 418, 516, 735
MaeI CTAG 1 cut(s) 670
MaeII ACGT 2 cut(s) 186, 428
MaeIII GTNAC 1 cut(s) 740
MalI GATC 6 cut(s) 106, 257, 320, 347, 581, 605
MboI GATC 6 cut(s) 104, 255, 318, 345, 579, 603
MboII GAAGA 9 cut(s) 24, 114, 219, 409, 502, 505, 523, 535, 673
MluCI AATT 4 cut(s) 402, 437, 536, 642
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 8 cut(s) 158, 269, 343, 384, 489, 563, 624, 728
MseI TTAA 3 cut(s) 416, 425, 511
MslI CAYNNNNRTG 2 cut(s) 593, 770
MspA1I CMGCKG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 505
MvaI CCWGG 1 cut(s) 505
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 6 cut(s) 104, 255, 318, 345, 579, 603
NlaIII CATG 5 cut(s) 229, 325, 559, 573, 750
NmuCI GTSAC 1 cut(s) 740
NspI RCATGY 1 cut(s) 573
PaeI GCATGC 1 cut(s) 573
PagI TCATGA 3 cut(s) 225, 321, 555
PciSI GCTCTTC 2 cut(s) 536, 656
PkrI GCNGC 3 cut(s) 358, 361, 364
Ple19I CGATCG 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 167
Psp1406I AACGTT 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 503
PspPI GGNCC 2 cut(s) 132, 167
PspPPI RGGWCCY 1 cut(s) 167
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 362
PvuI CGATCG 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 28, 55, 480
RsaNI GTAC 3 cut(s) 27, 54, 479
RseI CAYNNNNRTG 2 cut(s) 593, 770
SapI GCTCTTC 2 cut(s) 536, 656
SaqAI TTAA 3 cut(s) 416, 425, 511
SatI GCNGC 3 cut(s) 357, 360, 363
Sau3AI GATC 6 cut(s) 104, 255, 318, 345, 579, 603
Sau96I GGNCC 2 cut(s) 132, 167
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 4 cut(s) 321, 418, 516, 735
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 593, 770
SphI GCATGC 1 cut(s) 573
Sse9I AATT 4 cut(s) 402, 437, 536, 642
SsiI CCGC 2 cut(s) 40, 706
SspMI CTAG 1 cut(s) 670
StyD4I CCNGG 1 cut(s) 503
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 189, 431
TaqI TCGA 2 cut(s) 196, 348
TasI AATT 4 cut(s) 402, 437, 536, 642
Tru1I TTAA 3 cut(s) 416, 425, 511
Tru9I TTAA 3 cut(s) 416, 425, 511
TseFI GTSAC 1 cut(s) 740
TseI GCWGC 3 cut(s) 356, 359, 362
Tsp45I GTSAC 1 cut(s) 740
TspDTI ATGAA 5 cut(s) 214, 473, 635, 691, 788
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 751
XspI CTAG 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.