Rroxscaffold_159G00433050
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000159
OG0000639
Physical Location & Seq
Reverse (-)
775803 .. 778593
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_159G00433050.1

Sequence Viewer

Length: 1416 bp
ATGAGCTGTGGCGGCTTCATAGTTCCGAAGGGATACCAATTCCATCCCTCCGACGAGGAGCTGCTTAGTCACTTGGAGGAGAAGAATCAGTGCAAGGACTCCCAGATCACTACCATCATCCCTGAAATCGATGTGTGCAAGCATGAGCCTTGCGAGTTACCAAAACTGGCATTCACAGGGGCGGAAAGTCTGGGCAGGAAATTTTTCTTTTTCTTCTTCTTTTGGTTTGCAAGGGAAGTGTCTTGGGACAATCAGGAAAAGTGGTACTTCTTCACTTCGCGTGATTGCAAGTACAATAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTTTGGAAGATCACAGGCAAGGACCGTACAATCAAGGCCCCCGGCTCCAAAGCTGTCATTGGGAGAAAGAGGACCTCGACCTTCTACAAACGTGGAGTGCCAAAATCCCAGAAGACCAGCTGGGTTATTCATGAATATTATCTCATTCAGGCACATTCTGATCCTCCTAAGCAGAAAGGGGACTTTGTTGTCTGCTGCTTGAAGTACAAGTCAGACAACTCTGATCATGATAGGGATGCCCCATTCTGCGATCGAGGTAGTAGCAGCTGCAGTATGGCCTCCAATGTTGAAAATAAAGCTGAAGAAAATTGGGCATCGAAAGAGCTGGTTAATGTTGCTCCAATTCCCGGTGGAAATGATGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCTGGCTTTAAAGGAGCTGAGAGATGCACTTCAGATTCCCATTGGCAATCCACATGAATTCGAAGGCACGCAAACTGATCCTTGTCGTATAGATAAGAATGATCCTTCAACCGCTGTTGAAGGCCAACCTGATAGAAGCAATTCATCTGATATGATTGAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCACCACCTCAACTGCATCAGCTACATCAGTCACCAATGCATACCACCAATGTCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGAGGATAATGACCCTTCTCTTACAAAGAAGAATAATATCTCAACCAATGATGACAACGAATTAGTTAGCAACATCGCATCTAGTTCTGAAAATCAAGCTGCAAATATGATTCCCAAGGGATATTCTCTACTAGGAGCAAATCTGGGATCAGAATTTCATTCATTTCTGCCAAAGGATTACGATTATACATTACCACCAATAAACGGAGGACCGAGAGATTTTTCCCATGACAATAATTTCATTGAGTGGGATGATTTACTATCTTCATATGAAGGTAGTGAAGCTGCAGAGGCATTATACTGCTGTTTATCTGCTCCAGAAGAAACTGAAAGTCCTGGAAGCAGACAACAGTTCAAAGCTGGCAGACAACAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

471

Amino Acids

53.19

Weight (kDa)

4.94

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 158 1.2e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AccII CGCG 1 cut(s) 280
AciI CCGC 4 cut(s) 12, 182, 852, 944
AclWI GGATC 4 cut(s) 488, 812, 836, 1192
AcsI RAATTY 3 cut(s) 200, 797, 1190
AcuI CTGAAG 2 cut(s) 654, 755
AfaI GTAC 4 cut(s) 266, 293, 361, 539
AfiI CCNNNNNNNGG 2 cut(s) 680, 1241
AgsI TTSAA 6 cut(s) 535, 623, 849, 860, 899, 1393
AjnI CCWGG 2 cut(s) 741, 1372
AlwI GGATC 4 cut(s) 488, 812, 836, 1192
AoxI GGCC 3 cut(s) 369, 609, 862
ApeKI GCWGC 6 cut(s) 61, 528, 597, 600, 1136, 1322
ApoI RAATTY 3 cut(s) 200, 797, 1190
Asp700I GAANNNNTTC 2 cut(s) 203, 880
AspS9I GGNCC 4 cut(s) 355, 370, 405, 1247
AsuC2I CCSGG 2 cut(s) 375, 681
AsuHPI GGTGA 1 cut(s) 972
AsuII TTCGAA 1 cut(s) 801
AvaII GGWCC 3 cut(s) 355, 405, 1247
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 6 cut(s) 48, 515, 587, 609, 1123, 1309
BccI CCATC 2 cut(s) 51, 122
BciT130I CCWGG 2 cut(s) 743, 1374
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 2 cut(s) 375, 681
BfaI CTAG 4 cut(s) 908, 1119, 1169, 1414
BfmI CTRYAG 3 cut(s) 321, 601, 1323
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 7 cut(s) 13, 62, 529, 598, 601, 1137, 1323
BlsI GCNGC 7 cut(s) 14, 63, 530, 599, 602, 1138, 1324
Bme1390I CCNGG 4 cut(s) 375, 681, 743, 1374
Bme18I GGWCC 3 cut(s) 355, 405, 1247
BmgT120I GGNCC 4 cut(s) 355, 370, 405, 1247
BmiI GGNNCC 2 cut(s) 372, 379
BmrFI CCNGG 4 cut(s) 375, 681, 743, 1374
BmsI GCATC 5 cut(s) 559, 656, 754, 973, 1124
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 1338
Bpu10I CCTNAGC 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 375, 681
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 373, 1152
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 1241
Bse1I ACTGG 2 cut(s) 171, 712
BseBI CCWGG 2 cut(s) 743, 1374
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 373, 1152
BseGI GGATG 5 cut(s) 43, 117, 574, 940, 1294
BseLI CCNNNNNNNGG 2 cut(s) 680, 1241
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 2 cut(s) 171, 712
BseRI GAGGAG 2 cut(s) 71, 92
BseXI GCAGC 6 cut(s) 48, 515, 587, 609, 1123, 1309
BseYI CCCAGC 1 cut(s) 453
BsgI GTGCAG 1 cut(s) 933
Bsh1236I CGCG 1 cut(s) 280
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 3 cut(s) 371, 611, 864
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 586
BsiSI CCGG 2 cut(s) 375, 681
BslFI GGGAC 2 cut(s) 260, 527
BslI CCNNNNNNNGG 2 cut(s) 680, 1241
BsmFI GGGAC 2 cut(s) 260, 527
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 3 cut(s) 371, 611, 864
Bsp119I TTCGAA 1 cut(s) 801
Bsp143I GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
BspACI CCGC 4 cut(s) 12, 182, 852, 944
BspANI GGCC 3 cut(s) 371, 611, 864
BspCNI CTCAG 1 cut(s) 750
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 280
BspHI TCATGA 2 cut(s) 463, 559
BspLI GGNNCC 2 cut(s) 372, 379
BspMAI CTGCAG 2 cut(s) 605, 1327
BspPI GGATC 4 cut(s) 488, 812, 836, 1192
BspQI GCTCTTC 1 cut(s) 894
BspT104I TTCGAA 1 cut(s) 801
BsrI ACTGG 2 cut(s) 171, 712
BssECI CCNNGG 2 cut(s) 373, 1152
BssMI GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
BssT1I CCWWGG 1 cut(s) 1152
Bst2UI CCWGG 2 cut(s) 743, 1374
Bst4CI ACNGT 3 cut(s) 359, 1389, 1410
Bst6I CTCTTC 2 cut(s) 726, 894
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 4 cut(s) 140, 809, 948, 1399
BstDEI CTNAG 3 cut(s) 65, 501, 758
BstF5I GGATG 5 cut(s) 43, 117, 574, 940, 1294
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 8 cut(s) 108, 345, 496, 559, 586, 820, 844, 1187
BstMBI GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 2 cut(s) 12, 1328
BstNI CCWGG 2 cut(s) 743, 1374
BstSCI CCNGG 4 cut(s) 373, 679, 741, 1372
BstSFI CTRYAG 3 cut(s) 321, 601, 1323
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 6 cut(s) 48, 515, 587, 609, 1123, 1309
BstV2I GAAGAC 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 371, 611, 864
BsuTUI ATCGAT 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 1096
BtsCI GGATG 5 cut(s) 43, 117, 574, 940, 1294
BtsIMutI CAGTG 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 140, 809, 948, 1399
CciI TCATGA 2 cut(s) 463, 559
Cfr13I GGNCC 4 cut(s) 355, 370, 405, 1247
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 4 cut(s) 265, 292, 360, 538
CviAII CATG 5 cut(s) 143, 464, 560, 794, 1265
CviQI GTAC 4 cut(s) 265, 292, 360, 538
DdeI CTNAG 3 cut(s) 65, 501, 758
DpnI GATC 8 cut(s) 107, 344, 495, 558, 585, 819, 843, 1186
DpnII GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
DraI TTTAAA 1 cut(s) 750
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 726, 894
EarI CTCTTC 2 cut(s) 726, 894
EciI GGCGGA 2 cut(s) 197, 933
Eco130I CCWWGG 1 cut(s) 1152
Eco47I GGWCC 3 cut(s) 355, 405, 1247
Eco57I CTGAAG 2 cut(s) 654, 755
EcoO109I RGGNCCY 2 cut(s) 370, 405
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 741, 1372
EcoT14I CCWWGG 1 cut(s) 1152
EcoT22I ATGCAT 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 1152
FaeI CATG 5 cut(s) 146, 467, 563, 797, 1268
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 2 cut(s) 260, 527
FatI CATG 5 cut(s) 142, 463, 559, 793, 1264
FauNDI CATATG 1 cut(s) 1306
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 7 cut(s) 13, 62, 529, 598, 601, 1137, 1323
FokI GGATG 5 cut(s) 30, 104, 581, 927, 1301
Fsp4HI GCNGC 7 cut(s) 13, 62, 529, 598, 601, 1137, 1323
FspBI CTAG 4 cut(s) 908, 1119, 1169, 1414
GluI GCNGC 7 cut(s) 13, 62, 529, 598, 601, 1137, 1323
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 1338
HaeIII GGCC 3 cut(s) 371, 611, 864
HapII CCGG 2 cut(s) 375, 681
Hin1II CATG 5 cut(s) 146, 467, 563, 797, 1268
HinfI GANTC 5 cut(s) 85, 98, 775, 929, 1147
HpaII CCGG 2 cut(s) 375, 681
HphI GGTGA 1 cut(s) 972
Hpy188I TCNGA 9 cut(s) 27, 52, 493, 547, 556, 774, 889, 1126, 1189
Hpy188III TCNNGA 5 cut(s) 254, 464, 560, 926, 1355
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 8 cut(s) 22, 323, 424, 797, 854, 855, 1062, 1304
HpyCH4III ACNGT 3 cut(s) 359, 1389, 1410
HpyCH4IV ACGT 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 1328
HpyF3I CTNAG 3 cut(s) 65, 501, 758
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 5 cut(s) 146, 467, 563, 797, 1268
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
LguI GCTCTTC 1 cut(s) 894
LmnI GCTCC 7 cut(s) 58, 314, 383, 676, 754, 1172, 1357
Lsp1109I GCAGC 6 cut(s) 48, 515, 587, 609, 1123, 1309
LweI GCATC 5 cut(s) 559, 656, 754, 973, 1124
MaeI CTAG 4 cut(s) 908, 1119, 1169, 1414
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 68, 156, 978
MalI GATC 8 cut(s) 107, 344, 495, 558, 585, 819, 843, 1186
MboI GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
MluCI AATT 9 cut(s) 38, 200, 640, 675, 797, 880, 1097, 1190, 1273
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 75, 336
Mph1103I ATGCAT 1 cut(s) 990
MroXI GAANNNNTTC 2 cut(s) 203, 880
MseI TTAA 2 cut(s) 663, 749
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 3 cut(s) 453, 600, 854
MspI CCGG 2 cut(s) 375, 681
MspR9I CCNGG 4 cut(s) 375, 681, 743, 1374
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 2 cut(s) 743, 1374
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 12, 1328
NciI CCSGG 2 cut(s) 375, 681
NdeI CATATG 1 cut(s) 1306
NdeII GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
NlaIII CATG 5 cut(s) 146, 467, 563, 797, 1268
NlaIV GGNNCC 2 cut(s) 372, 379
NmuCI GTSAC 2 cut(s) 68, 978
NsiI ATGCAT 1 cut(s) 990
NspV TTCGAA 1 cut(s) 801
PagI TCATGA 2 cut(s) 463, 559
PciSI GCTCTTC 1 cut(s) 894
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 2 cut(s) 203, 880
PfeI GAWTC 4 cut(s) 85, 775, 929, 1147
PfoI TCCNGGA 1 cut(s) 1372
PkrI GCNGC 7 cut(s) 14, 63, 530, 599, 602, 1138, 1324
Ple19I CGATCG 1 cut(s) 586
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 741, 1372
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 2 cut(s) 741, 1372
PspN4I GGNNCC 2 cut(s) 372, 379
PspPI GGNCC 4 cut(s) 355, 370, 405, 1247
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 2 cut(s) 605, 1327
PvuI CGATCG 1 cut(s) 586
PvuII CAGCTG 2 cut(s) 453, 600
RsaI GTAC 4 cut(s) 266, 293, 361, 539
RsaNI GTAC 4 cut(s) 265, 292, 360, 538
RseI CAYNNNNRTG 1 cut(s) 1008
SapI GCTCTTC 1 cut(s) 894
SaqAI TTAA 2 cut(s) 663, 749
SatI GCNGC 7 cut(s) 13, 62, 529, 598, 601, 1137, 1323
Sau3AI GATC 8 cut(s) 105, 342, 493, 556, 583, 817, 841, 1184
Sau96I GGNCC 4 cut(s) 355, 370, 405, 1247
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 375, 681, 743, 1374
SfaNI GCATC 5 cut(s) 559, 656, 754, 973, 1124
SfcI CTRYAG 3 cut(s) 321, 601, 1323
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 3 cut(s) 355, 405, 1247
SmiMI CAYNNNNRTG 1 cut(s) 1008
Sse9I AATT 9 cut(s) 38, 200, 640, 675, 797, 880, 1097, 1190, 1273
SsiI CCGC 4 cut(s) 12, 182, 852, 944
SspI AATATT 1 cut(s) 470
SspMI CTAG 4 cut(s) 908, 1119, 1169, 1414
StyD4I CCNGG 4 cut(s) 373, 679, 741, 1372
StyI CCWWGG 1 cut(s) 1152
TaaI ACNGT 3 cut(s) 359, 1389, 1410
TaiI ACGT 1 cut(s) 427
TaqI TCGA 5 cut(s) 129, 410, 586, 650, 801
TaqII GACCGA 1 cut(s) 1264
TasI AATT 9 cut(s) 38, 200, 640, 675, 797, 880, 1097, 1190, 1273
TatI WGTACW 2 cut(s) 291, 537
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 4 cut(s) 85, 775, 929, 1147
Tru1I TTAA 2 cut(s) 663, 749
Tru9I TTAA 2 cut(s) 663, 749
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 68, 978
TseI GCWGC 6 cut(s) 61, 528, 597, 600, 1136, 1322
Tsp45I GTSAC 2 cut(s) 68, 978
TspGWI ACGGA 1 cut(s) 1257
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 355, 405, 1247
XapI RAATTY 3 cut(s) 200, 797, 1190
XmnI GAANNNNTTC 2 cut(s) 203, 880
XspI CTAG 4 cut(s) 908, 1119, 1169, 1414
Zsp2I ATGCAT 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.