Rw1G005340
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000639
Physical Location & Seq
Reverse (-)
10351958 .. 10353723
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005340.1

Sequence Viewer

Length: 1494 bp
ATGAGCTGCGGCGACTTCACAGTTCCAAAGGGATACCAATTCCATCCCTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGGAGAAGAATCAGTGCAAGGACTCCCAGATCACGACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCATGAGTTACCAGTCATTCACACTCTATTGTACGTCTTGCATTTTTGCAGAACTGGCGTTCACAAGGGCGGAAAGTCTGGGCACGAAATTTTTCTTTTTTTCTTCTTCTTTTGGTTTGCAAGGGAAGTGTCTTGGGACAGTCAAGGAAAGTGGTACTTCTTCACTCCGCGTGATTACAAGTACAATAACAGCACTCGCTCCAACACGACTACAGGGGAAGGGTTTTGGAAGATCACAGGCAAGGACCGTGCAATCAAGGCCCCCGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCTTGACCTTCTACAAACGTGGAGTGCTGAAATCCCAGAAGACCAACTGGGTTATTCATGAGTATTATCTCATTCAGGCACATTCTGATCCTCCTAAGCAGATAGGGGACTTTGTTATCTGCTGCTTGAAGTACAAGTCAGACAACTCTGATTATGATAAGGATGCCCCATTCTGCGATCAAGGTAGCAGTAGCTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAACAGGGCATCGGAAGAGCTGGTAAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCTGACTTTAGAGGAGGTGGAAGATATTCTTCAGATTCCCATTGGCAATCCGCATGAATTGGAAGGCACGCAAACTGATCCTTGTCATTTAGATAAGAATGATCTCTCAAGCTCTGTTGAAGGCCAACCTGATAGAAGCAATTCGTCTGACCTGATTGAAGAGCTACTAGATAACCCAGAAAATCTGGATTCACTCTTTCATCCGCTTGCGCCACCTCAACTGCATCAGCTACATCAGTCACCAATGTATACCACCAATGTCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGAGGATAATGACCCTTCTTCTAAGAAGAAGAAGAATATTTCAACCAATGATGATGACGAATTAGTTAGCAACACCGCATCTAGTTCTGAAAATCAAGCTGCAAATATGATTCCAGAGGGATATTCTCAACTAGGAGCAAATCTGGGATCAGACTTTGATTCATTTTTGCCAAAGGATTACAATTATACATTACCATCAATAAACGGAGGACCGAGAGATTTTTCCCATGACAATAATTTCATTGAGTGGGATGATTTACTATCTTTATACGAAGGTAATGACTCTTCTCTCGCACAGTTCCCACATACAGTTATTGATGGAGGTAGAGGAGCAATCAGTGACAGAAACACCGAAGTAGTACATGGATCGGTAAACGATTATTCTGCATTAGCCATTGGAGCATTGCTCCAGTGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

497

Amino Acids

55.93

Weight (kDa)

4.76

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 57 7.7e-11 No apical meristem (NAM) protein
NAM PF02365 98 - 172 2.9e-19 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1025
AccII CGCG 1 cut(s) 322
AciI CCGC 6 cut(s) 9, 222, 320, 827, 980, 1149
AclWI GGATC 4 cut(s) 530, 848, 1228, 1447
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 2 cut(s) 696, 791
AfaI GTAC 5 cut(s) 185, 308, 335, 581, 1434
AgsI TTSAA 5 cut(s) 577, 665, 896, 935, 1116
AlwI GGATC 4 cut(s) 530, 848, 1228, 1447
AlwNI CAGNNNCTG 1 cut(s) 642
AoxI GGCC 3 cut(s) 411, 651, 898
ApeKI GCWGC 5 cut(s) 6, 61, 570, 642, 1172
ApoI RAATTY 1 cut(s) 240
Asp700I GAANNNNTTC 3 cut(s) 243, 801, 916
AspLEI GCGC 1 cut(s) 988
AspS9I GGNCC 4 cut(s) 397, 412, 447, 1283
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 1008
AvaII GGWCC 3 cut(s) 397, 447, 1283
BaeGI GKGCMC 1 cut(s) 237
BarI GAAGNNNNNNTAC 2 cut(s) 1342, 1374
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 494
BbvI GCAGC 4 cut(s) 48, 557, 629, 1159
BccI CCATC 4 cut(s) 51, 125, 1276, 1385
BcgI CGANNNNNNTGC 2 cut(s) 1439, 1473
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 417
BfaI CTAG 3 cut(s) 944, 1155, 1205
BfmI CTRYAG 2 cut(s) 363, 643
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 6 cut(s) 7, 10, 62, 571, 643, 1173
BlsI GCNGC 6 cut(s) 8, 11, 63, 572, 644, 1174
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 3 cut(s) 397, 447, 1283
BmgT120I GGNCC 4 cut(s) 397, 412, 447, 1283
BmiI GGNNCC 2 cut(s) 414, 421
BmrFI CCNGG 1 cut(s) 417
BmrI ACTGGG 2 cut(s) 505, 717
BmsI GCATC 4 cut(s) 601, 698, 1009, 1160
BmuI ACTGGG 2 cut(s) 505, 717
BpiI GAAGAC 1 cut(s) 494
BplI GAGNNNNNCTC 1 cut(s) 1464
BpmI CTGGAG 1 cut(s) 1466
Bpu10I CCTNAGC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 868
BpuMI CCSGG 1 cut(s) 417
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 415
Bse1I ACTGG 6 cut(s) 164, 211, 500, 723, 748, 1483
Bse3DI GCAATG 1 cut(s) 1475
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 5 cut(s) 43, 120, 616, 976, 1330
BseMI GCAATG 1 cut(s) 1475
BseNI ACTGG 6 cut(s) 164, 211, 500, 723, 748, 1483
BseRI GAGGAG 4 cut(s) 71, 95, 803, 1416
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 4 cut(s) 48, 557, 629, 1159
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 3 cut(s) 413, 653, 900
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 2 cut(s) 302, 569
BsmFI GGGAC 2 cut(s) 302, 569
BsnI GGCC 3 cut(s) 413, 653, 900
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
BspACI CCGC 6 cut(s) 9, 222, 320, 827, 980, 1149
BspANI GGCC 3 cut(s) 413, 653, 900
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 1 cut(s) 322
BspHI TCATGA 2 cut(s) 154, 505
BspLI GGNNCC 2 cut(s) 414, 421
BspMAI CTGCAG 1 cut(s) 647
BspPI GGATC 4 cut(s) 530, 848, 1228, 1447
BspQI GCTCTTC 2 cut(s) 690, 930
BsrDI GCAATG 1 cut(s) 1475
BsrI ACTGG 6 cut(s) 164, 211, 500, 723, 748, 1483
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
BssNAI GTATAC 1 cut(s) 1026
BssSI CACGAG 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 22, 293, 401, 1371, 1384
Bst6I CTCTTC 4 cut(s) 690, 762, 930, 1363
BstAPI GCANNNNNTGC 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 143, 845, 984
BstDEI CTNAG 3 cut(s) 65, 543, 1095
BstF5I GGATG 5 cut(s) 43, 120, 616, 976, 1330
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 988
BstKTI GATC 8 cut(s) 111, 387, 538, 628, 856, 880, 1223, 1442
BstMBI GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
BstMWI GCNNNNNNNGC 4 cut(s) 207, 410, 642, 1472
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 2 cut(s) 363, 643
BstSLI GKGCMC 1 cut(s) 237
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 48, 557, 629, 1159
BstV2I GAAGAC 1 cut(s) 494
BstZ17I GTATAC 1 cut(s) 1026
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 413, 653, 900
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 5 cut(s) 43, 120, 616, 976, 1330
BtsIMutI CAGTG 4 cut(s) 98, 730, 1417, 1490
Cac8I GCNNGC 3 cut(s) 143, 845, 984
CaiI CAGNNNCTG 1 cut(s) 642
CciI TCATGA 2 cut(s) 154, 505
CfoI GCGC 1 cut(s) 988
Cfr13I GGNCC 4 cut(s) 397, 412, 447, 1283
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 5 cut(s) 184, 307, 334, 580, 1433
CspCI CAANNNNNGTGG 2 cut(s) 284, 319
CviAII CATG 5 cut(s) 155, 506, 830, 1301, 1436
CviQI GTAC 5 cut(s) 184, 307, 334, 580, 1433
DdeI CTNAG 3 cut(s) 65, 543, 1095
DpnI GATC 8 cut(s) 110, 386, 537, 627, 855, 879, 1222, 1441
DpnII GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
Eam1104I CTCTTC 4 cut(s) 690, 762, 930, 1363
EarI CTCTTC 4 cut(s) 690, 762, 930, 1363
EciI GGCGGA 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 397, 447, 1283
Eco57I CTGAAG 2 cut(s) 696, 791
EcoO109I RGGNCCY 2 cut(s) 412, 447
FaeI CATG 5 cut(s) 158, 509, 833, 1304, 1439
FalI AAGNNNNNCTT 6 cut(s) 293, 325, 434, 466, 789, 821
FaqI GGGAC 2 cut(s) 302, 569
FatI CATG 5 cut(s) 154, 505, 829, 1300, 1435
FblI GTMKAC 1 cut(s) 1025
Fnu4HI GCNGC 6 cut(s) 7, 10, 62, 571, 643, 1173
FokI GGATG 5 cut(s) 30, 107, 623, 963, 1337
Fsp4HI GCNGC 6 cut(s) 7, 10, 62, 571, 643, 1173
FspBI CTAG 3 cut(s) 944, 1155, 1205
GlaI GCGC 1 cut(s) 987
GluI GCNGC 6 cut(s) 7, 10, 62, 571, 643, 1173
GsuI CTGGAG 1 cut(s) 1466
HaeIII GGCC 3 cut(s) 413, 653, 900
HapII CCGG 1 cut(s) 417
HhaI GCGC 1 cut(s) 988
Hin1II CATG 5 cut(s) 158, 509, 833, 1304, 1439
Hin6I GCGC 1 cut(s) 986
HinP1I GCGC 1 cut(s) 986
HinfI GANTC 7 cut(s) 88, 101, 811, 965, 1183, 1232, 1355
HpaII CCGG 1 cut(s) 417
HphI GGTGA 1 cut(s) 1008
Hpy166II GTNNAC 3 cut(s) 214, 1026, 1447
Hpy188I TCNGA 9 cut(s) 52, 535, 589, 598, 694, 810, 925, 1162, 1225
Hpy188III TCNNGA 5 cut(s) 112, 155, 506, 962, 1187
Hpy8I GTNNAC 3 cut(s) 214, 1026, 1447
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 365, 466, 833, 890, 1098, 1340
HpyCH4III ACNGT 5 cut(s) 22, 293, 401, 1371, 1384
HpyCH4IV ACGT 2 cut(s) 186, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 410, 642, 1472
HpyF3I CTNAG 3 cut(s) 65, 543, 1095
HpySE526I ACGT 2 cut(s) 186, 466
Hsp92II CATG 5 cut(s) 158, 509, 833, 1304, 1439
HspAI GCGC 1 cut(s) 986
Kzo9I GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
LguI GCTCTTC 2 cut(s) 690, 930
LmnI GCTCC 7 cut(s) 58, 356, 425, 1208, 1403, 1472, 1485
Lsp1109I GCAGC 4 cut(s) 48, 557, 629, 1159
LweI GCATC 4 cut(s) 601, 698, 1009, 1160
MaeI CTAG 3 cut(s) 944, 1155, 1205
MaeII ACGT 2 cut(s) 186, 466
MaeIII GTNAC 4 cut(s) 68, 159, 1014, 1412
MalI GATC 8 cut(s) 110, 386, 537, 627, 855, 879, 1222, 1441
MboI GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 8 cut(s) 38, 240, 717, 833, 916, 1133, 1255, 1309
MlyI GAGTC 2 cut(s) 95, 1349
MmeI TCCRAC 2 cut(s) 75, 378
MroXI GAANNNNTTC 3 cut(s) 243, 801, 916
MslI CAYNNNNRTG 1 cut(s) 1044
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 4 cut(s) 207, 410, 642, 1472
NciI CCSGG 1 cut(s) 417
NdeII GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
NlaIII CATG 5 cut(s) 158, 509, 833, 1304, 1439
NlaIV GGNNCC 2 cut(s) 414, 421
NmuCI GTSAC 3 cut(s) 68, 1014, 1412
PagI TCATGA 2 cut(s) 154, 505
PciSI GCTCTTC 2 cut(s) 690, 930
PdmI GAANNNNTTC 3 cut(s) 243, 801, 916
PfeI GAWTC 5 cut(s) 88, 811, 965, 1183, 1232
PkrI GCNGC 6 cut(s) 8, 11, 63, 572, 644, 1174
PleI GAGTC 2 cut(s) 95, 1349
PpsI GAGTC 2 cut(s) 95, 1349
PpuMI RGGWCCY 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 414, 421
PspPI GGNCC 4 cut(s) 397, 412, 447, 1283
PspPPI RGGWCCY 1 cut(s) 447
PsrI GAACNNNNNNTAC 2 cut(s) 696, 728
PstI CTGCAG 1 cut(s) 647
PstNI CAGNNNCTG 1 cut(s) 642
RsaI GTAC 5 cut(s) 185, 308, 335, 581, 1434
RsaNI GTAC 5 cut(s) 184, 307, 334, 580, 1433
RseI CAYNNNNRTG 1 cut(s) 1044
SapI GCTCTTC 2 cut(s) 690, 930
SatI GCNGC 6 cut(s) 7, 10, 62, 571, 643, 1173
Sau3AI GATC 8 cut(s) 108, 384, 535, 625, 853, 877, 1220, 1439
Sau96I GGNCC 4 cut(s) 397, 412, 447, 1283
SchI GAGTC 2 cut(s) 95, 1349
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 4 cut(s) 601, 698, 1009, 1160
SfcI CTRYAG 2 cut(s) 363, 643
SinI GGWCC 3 cut(s) 397, 447, 1283
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 1 cut(s) 883
SmoI CTYRAG 1 cut(s) 883
Sse9I AATT 8 cut(s) 38, 240, 717, 833, 916, 1133, 1255, 1309
SsiI CCGC 6 cut(s) 9, 222, 320, 827, 980, 1149
SspI AATATT 1 cut(s) 1111
SspMI CTAG 3 cut(s) 944, 1155, 1205
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 5 cut(s) 22, 293, 401, 1371, 1384
TaiI ACGT 2 cut(s) 189, 469
TaqI TCGA 1 cut(s) 132
TaqII GACCGA 1 cut(s) 1300
TasI AATT 8 cut(s) 38, 240, 717, 833, 916, 1133, 1255, 1309
TatI WGTACW 3 cut(s) 333, 579, 1432
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 5 cut(s) 88, 811, 965, 1183, 1232
TscAI CASTG 4 cut(s) 98, 730, 1417, 1490
TseFI GTSAC 3 cut(s) 68, 1014, 1412
TseI GCWGC 5 cut(s) 6, 61, 570, 642, 1172
Tsp45I GTSAC 3 cut(s) 68, 1014, 1412
TspDTI ATGAA 7 cut(s) 494, 753, 846, 965, 1062, 1224, 1303
TspGWI ACGGA 1 cut(s) 1293
TspRI CASTG 4 cut(s) 98, 730, 1417, 1490
VpaK11BI GGWCC 3 cut(s) 397, 447, 1283
XapI RAATTY 1 cut(s) 240
XmiI GTMKAC 1 cut(s) 1025
XmnI GAANNNNTTC 3 cut(s) 243, 801, 916
XspI CTAG 3 cut(s) 944, 1155, 1205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.