RLG00000027712
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000639
Physical Location & Seq
Forward (+)
14257273 .. 14259716
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027712

Sequence Viewer

Length: 1236 bp
ATGAGCAGCAGCGACTTCACAGTTCCGCCGGGATACCGATTCCATCCCACCGACGAGAAGCTGCTTAGTGACTTGGAGAAGAAGAATCAGTGCAAGGACTCCGAGATCACCACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCGCGAGTTACCAGAACTGGCATTCACAAGGGCGCAAAATCTGGGCAGGAAGTTTTTCTCTTTTTTCTTCTTCTGGTTTGCATGGGCAGAGTCTTGGGACAGTCAGGGCAAGTGGTACTTCTTCACTCCGCGTGAATACAAGTACAATAACAGCAGACGCTCCAACAGGACTACAGGGGAAGGGTTCTGGAAGATCACAGGCAAGGACCGTGACATCAAGGCCCCTGGCTCCAAAGCTGTGATTGGCAGAAAGAGGACCTTGACCTTCTACAAACGTGGAGTGCCGAAACCCCAGAAGACTGGCTGGGTCATTCATGAGTTTTATCTCATTGAGGCACATTCTAATCCTCCTAAGCAGATAGGGGATTTTGTTGTCTGTTGCTTGAAGTATAAGTCAGACAACCCTGATCATGATAAGGATGCCCCATTCTTCGATCGAGGTAGCACTAGCTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAATTGGGCATTAATTGAGCAGGTTAATGTTGTTCCAATTCACAATGGAAATGATGATGAAGCTCAAACTGGTGGTGGTATGATTACACAAGAAGAGGAATACCTGGCTTTAAAGGAACTGCAAGATGCTCTTCAGATTCCCATTGGCAATCCTCATGAATTCCAAGGCACGCAAACTGATCCTTGTCTTATAGATAAGCATGATCTTTTGACCTCTGTTGAAGGCGGACCTGATAAAAGCAATTCATTTGATGTGATTGAAGAGCCACTAGATAACCCAGAAAATCTGGACTCACTCTTTGATCTGACTGCGCCACCTCAACTGCATCAGCCACCAATGTATACCACCAATGACCATAATGATGAATGTCGTAAGAGGGCATATCCATTTGAGGACAATGAGCCTTCTCTTGCGAAGAGGAATAATATTTCAACCAATGATGATGACGAATTAGTTAGCAAGACCGCATCTAGTTGGGAAAATCAAGCTGCAAATATGATTCAAGAGATATATTCTCAACCAGGAGCAAATCTGGGATCAGACTATGATTCATTTCTGCCAAAGGATTACCCTTGTAATCTTATGCTTTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

412

Amino Acids

47.01

Weight (kDa)

4.85

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 158 9.3e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 980
AccII CGCG 2 cut(s) 153, 280
AciI CCGC 4 cut(s) 26, 278, 864, 1104
AclWI GGATC 2 cut(s) 812, 1183
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 2 cut(s) 654, 755
AfaI GTAC 2 cut(s) 266, 293
AgsI TTSAA 6 cut(s) 535, 623, 860, 899, 1071, 1142
AjnI CCWGG 3 cut(s) 373, 741, 1159
AluBI AGCT 6 cut(s) 61, 386, 600, 632, 701, 1127
AluI AGCT 6 cut(s) 61, 386, 600, 632, 701, 1127
AlwI GGATC 2 cut(s) 812, 1183
AoxI GGCC 2 cut(s) 369, 609
ApeKI GCWGC 5 cut(s) 6, 9, 61, 600, 1127
ApoI RAATTY 1 cut(s) 797
ArsI GACNNNNNNTTYG 2 cut(s) 920, 952
AseI ATTAAT 1 cut(s) 650
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 184, 952
AspS9I GGNCC 4 cut(s) 355, 370, 405, 866
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 3 cut(s) 355, 405, 866
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 5 cut(s) 18, 21, 48, 587, 1114
BccI CCATC 2 cut(s) 51, 122
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 3 cut(s) 375, 743, 1161
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 3 cut(s) 597, 908, 1110
BfmI CTRYAG 2 cut(s) 321, 601
BfuAI ACCTGC 1 cut(s) 649
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
BlsI GCNGC 5 cut(s) 8, 11, 63, 602, 1129
Bme1390I CCNGG 4 cut(s) 30, 375, 743, 1161
Bme18I GGWCC 3 cut(s) 355, 405, 866
BmgT120I GGNCC 4 cut(s) 355, 370, 405, 866
BmiI GGNNCC 2 cut(s) 372, 379
BmrFI CCNGG 4 cut(s) 30, 375, 743, 1161
BmsI GCATC 4 cut(s) 559, 754, 973, 1115
BpiI GAAGAC 1 cut(s) 452
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 373, 802
Bse1I ACTGG 3 cut(s) 171, 454, 712
BseBI CCWGG 3 cut(s) 375, 743, 1161
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 373, 802
BseGI GGATG 3 cut(s) 43, 117, 574
BseNI ACTGG 3 cut(s) 171, 454, 712
BseXI GCAGC 5 cut(s) 18, 21, 48, 587, 1114
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 153, 280
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 2 cut(s) 371, 611
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 586
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 2 cut(s) 371, 611
Bsp143I GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 4 cut(s) 26, 278, 864, 1104
BspANI GGCC 2 cut(s) 371, 611
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 2 cut(s) 153, 280
BspHI TCATGA 3 cut(s) 463, 559, 793
BspLI GGNNCC 2 cut(s) 372, 379
BspMAI CTGCAG 1 cut(s) 605
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 2 cut(s) 812, 1183
BspQI GCTCTTC 2 cut(s) 774, 894
BsrI ACTGG 3 cut(s) 171, 454, 712
BssECI CCNNGG 2 cut(s) 373, 802
BssMI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
BssNAI GTATAC 1 cut(s) 981
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 802
Bst1107I GTATAC 1 cut(s) 981
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 375, 743, 1161
Bst4CI ACNGT 3 cut(s) 22, 251, 359
Bst6I CTCTTC 4 cut(s) 726, 774, 894, 1049
BstAPI GCANNNNNTGC 1 cut(s) 600
BstC8I GCNNGC 2 cut(s) 140, 809
BstDEI CTNAG 2 cut(s) 65, 501
BstF5I GGATG 3 cut(s) 43, 117, 574
BstFNI CGCG 2 cut(s) 153, 280
BstHHI GCGC 2 cut(s) 184, 952
BstKTI GATC 8 cut(s) 108, 345, 559, 586, 820, 844, 943, 1178
BstMBI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 600
BstNI CCWGG 3 cut(s) 375, 743, 1161
BstSCI CCNGG 4 cut(s) 28, 373, 741, 1159
BstSFI CTRYAG 2 cut(s) 321, 601
BstUI CGCG 2 cut(s) 153, 280
BstV1I GCAGC 5 cut(s) 18, 21, 48, 587, 1114
BstV2I GAAGAC 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 449
BstZ17I GTATAC 1 cut(s) 981
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 371, 611
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 3 cut(s) 43, 117, 574
BtsIMutI CAGTG 1 cut(s) 95
BtuMI TCGCGA 1 cut(s) 153
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 2 cut(s) 140, 809
CciI TCATGA 3 cut(s) 463, 559, 793
CfoI GCGC 2 cut(s) 184, 952
Cfr13I GGNCC 4 cut(s) 355, 370, 405, 866
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 265, 292
CviAII CATG 5 cut(s) 231, 464, 560, 794, 839
CviQI GTAC 2 cut(s) 265, 292
DdeI CTNAG 2 cut(s) 65, 501
DpnI GATC 8 cut(s) 107, 344, 558, 585, 819, 843, 942, 1177
DpnII GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
DraI TTTAAA 1 cut(s) 750
Eam1104I CTCTTC 4 cut(s) 726, 774, 894, 1049
EarI CTCTTC 4 cut(s) 726, 774, 894, 1049
EciI GGCGGA 2 cut(s) 15, 879
Eco130I CCWWGG 1 cut(s) 802
Eco47I GGWCC 3 cut(s) 355, 405, 866
Eco57I CTGAAG 2 cut(s) 654, 755
EcoO109I RGGNCCY 2 cut(s) 370, 405
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 3 cut(s) 373, 741, 1159
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 5 cut(s) 234, 467, 563, 797, 842
FalI AAGNNNNNCTT 6 cut(s) 251, 283, 392, 424, 753, 785
FaqI GGGAC 1 cut(s) 260
FatI CATG 5 cut(s) 230, 463, 559, 793, 838
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 980
Fnu4HI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
FokI GGATG 3 cut(s) 30, 104, 581
Fsp4HI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
FspBI CTAG 3 cut(s) 597, 908, 1110
GlaI GCGC 2 cut(s) 183, 951
GluI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 2 cut(s) 371, 611
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 315
HhaI GCGC 2 cut(s) 184, 952
Hin1II CATG 5 cut(s) 234, 467, 563, 797, 842
Hin6I GCGC 2 cut(s) 182, 950
HinP1I GCGC 2 cut(s) 182, 950
HinfI GANTC 8 cut(s) 39, 85, 98, 239, 775, 929, 1138, 1187
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 981
Hpy188I TCNGA 6 cut(s) 103, 547, 774, 945, 1180, 1235
Hpy188III TCNNGA 7 cut(s) 152, 337, 464, 560, 794, 926, 1142
Hpy8I GTNNAC 1 cut(s) 981
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 323, 424, 854, 1053
HpyCH4III ACNGT 3 cut(s) 22, 251, 359
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 7 cut(s) 93, 138, 230, 603, 760, 964, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 600
HpyF3I CTNAG 2 cut(s) 65, 501
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 5 cut(s) 234, 467, 563, 797, 842
HspAI GCGC 2 cut(s) 182, 950
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
LguI GCTCTTC 2 cut(s) 774, 894
LmnI GCTCC 3 cut(s) 314, 383, 1163
Lsp1109I GCAGC 5 cut(s) 18, 21, 48, 587, 1114
LweI GCATC 4 cut(s) 559, 754, 973, 1115
MaeI CTAG 3 cut(s) 597, 908, 1110
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 68, 156, 359
MalI GATC 8 cut(s) 107, 344, 558, 585, 819, 843, 942, 1177
MboI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
MluCI AATT 6 cut(s) 640, 651, 675, 797, 880, 1088
MlyI GAGTC 3 cut(s) 92, 248, 923
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 3 cut(s) 650, 663, 749
MslI CAYNNNNRTG 1 cut(s) 999
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 4 cut(s) 30, 375, 743, 1161
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 3 cut(s) 375, 743, 1161
MvnI CGCG 2 cut(s) 153, 280
MwoI GCNNNNNNNGC 1 cut(s) 600
NciI CCSGG 1 cut(s) 30
NdeII GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
NlaIII CATG 5 cut(s) 234, 467, 563, 797, 842
NlaIV GGNNCC 2 cut(s) 372, 379
NmuCI GTSAC 2 cut(s) 68, 359
NruI TCGCGA 1 cut(s) 153
PagI TCATGA 3 cut(s) 463, 559, 793
PciSI GCTCTTC 2 cut(s) 774, 894
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 5 cut(s) 39, 85, 775, 1138, 1187
PkrI GCNGC 5 cut(s) 8, 11, 63, 602, 1129
Ple19I CGATCG 1 cut(s) 586
PleI GAGTC 3 cut(s) 92, 247, 923
PpsI GAGTC 3 cut(s) 92, 247, 923
PpuMI RGGWCCY 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 650
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 373, 741, 1159
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 373, 741, 1159
PspN4I GGNNCC 2 cut(s) 372, 379
PspPI GGNCC 4 cut(s) 355, 370, 405, 866
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 1 cut(s) 605
PvuI CGATCG 1 cut(s) 586
RruI TCGCGA 1 cut(s) 153
RsaI GTAC 2 cut(s) 266, 293
RsaNI GTAC 2 cut(s) 265, 292
RseI CAYNNNNRTG 1 cut(s) 999
SapI GCTCTTC 2 cut(s) 774, 894
SaqAI TTAA 3 cut(s) 650, 663, 749
SatI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
Sau3AI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1175
Sau96I GGNCC 4 cut(s) 355, 370, 405, 866
SchI GAGTC 3 cut(s) 92, 248, 923
ScrFI CCNGG 4 cut(s) 30, 375, 743, 1161
SfaNI GCATC 4 cut(s) 559, 754, 973, 1115
SfcI CTRYAG 2 cut(s) 321, 601
SinI GGWCC 3 cut(s) 355, 405, 866
SmiMI CAYNNNNRTG 1 cut(s) 999
Sse9I AATT 6 cut(s) 640, 651, 675, 797, 880, 1088
SsiI CCGC 4 cut(s) 26, 278, 864, 1104
SspI AATATT 1 cut(s) 1066
SspMI CTAG 3 cut(s) 597, 908, 1110
StyD4I CCNGG 4 cut(s) 28, 373, 741, 1159
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 3 cut(s) 22, 251, 359
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 129, 582, 586
TasI AATT 6 cut(s) 640, 651, 675, 797, 880, 1088
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 5 cut(s) 39, 85, 775, 1138, 1187
Tru1I TTAA 3 cut(s) 650, 663, 749
Tru9I TTAA 3 cut(s) 650, 663, 749
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 68, 359
TseI GCWGC 5 cut(s) 6, 9, 61, 600, 1127
Tsp45I GTSAC 2 cut(s) 68, 359
TspDTI ATGAA 6 cut(s) 452, 711, 810, 873, 1017, 1179
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 355, 405, 866
VspI ATTAAT 1 cut(s) 650
XapI RAATTY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 3 cut(s) 597, 908, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.