Rroxscaffold_4G00294920
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000639
Physical Location & Seq
Forward (+)
14845582 .. 14849178
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294920.1

Sequence Viewer

Length: 1413 bp
ATGAGCTGCGGCGACTTCGTTCCGCCGGGATACGGATTCCATCCCACCGACGAGATGCTGCTTAGTGAGTTGGAGGAGAAGAATCAGTGCAAGGACTCCGAGATCGCTACCATCATCCCTGTTATCGAGATGTGCAAGCACGAGCCTCACGAGTTACCAAAACTGGCATTCACAAGGGCGCAAAATCTAGGCAGGAAGTTTTTCTCCTTTTTCTTCTTCTGCTTTGCATGGGCAGAGTCTTGGGACAGTCAGGGCGAGTGGTACTTCTTCGCTCCGCGTGATTACAAGTACGCTAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGATTCTGGAAGCCCACAGGCAAGGTCCGCGACATCAAGGCCCCGGGCTCCAAAGCTGTGATTGGAAGAAAGAGGATCTTAACCTTCCAAAAACATGGAGAGCCGAACCCCCAGAAGACCGGCTGGGTCATTCATGAGTATTATCTCATTGAGGCACATTCTGATCCTCCTAAACAGATTGGGGACTTTGTTGTCTGTTGCTTGAAGTATAAGTCAAACAACTCTGATCATGATAAGGATGCTCCATTCTTCGATCGAGGTAGCACTAGCTACAGTATGGCCTACAATGTTGAAAATCAAGCTGAAGAAAATTGGGCATCCATTGAGCAGGTTAATGTCGTTCCATTTCCCAATGGAAATGGTGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCAGGCTTTCAAGGAGCTGGAAAATGCTCTTCAAGGCACTCAAACTGATCCGTGTCATATAGATAAGAATGATCTTTTGACCTCTGTTGAAGGCCGACCTGATAAAAGCAATTTGTCTGATATGATTGAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTGATACGCCTGCGCCACCTCAACTGCATCAGCCACCAATGTATACCACCAATGACCATAATGATGAATGTCGTAAGAGGGCATATCCATTTGAGGACAATGGGCCTTCTCTTGTGAAGAAGAATAATATTTCAACCAATGACGATGACGAATTAGTTAGCAAGACCGCATCTAGTTCGGAAAATCAAGCTGCAAATATGATTCAAGAGAGAAATTCTCAACAAGGAGCAAATCTCGGATCAGACTTTGATTCATTTCTGCCGAAGGATTACGATTATACACTACCATCAATAAACGGAGGACCGGGAGATTTTCCCCATGACAATAATTTTATTGAGTGGGATGATTTGCCATCCTTATACGAAGGTATGGACTATTCTCCCGCAAAGTTCTCACATACAGTTATTGATGGTGGTAGAGTAACCAGTGACGGAAACACCGAAGTAGTAGATGGATCGGTAAACGATTATTCTGCATTAGCCACTGGAGCAACGCTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

470

Amino Acids

52.74

Weight (kDa)

4.53

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 157 6.8e-27 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 646
AccI GTMKAC 1 cut(s) 947
AccII CGCG 2 cut(s) 277, 357
AciI CCGC 6 cut(s) 9, 23, 275, 355, 1071, 1287
AclWI GGATC 5 cut(s) 410, 485, 779, 1150, 1366
AcsI RAATTY 1 cut(s) 1117
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 2 cut(s) 263, 290
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 8 cut(s) 532, 620, 748, 770, 827, 866, 1038, 1109
AjnI CCWGG 1 cut(s) 738
AluBI AGCT 9 cut(s) 6, 383, 597, 629, 698, 754, 871, 1094, 1410
AluI AGCT 9 cut(s) 6, 383, 597, 629, 698, 754, 871, 1094, 1410
AlwI GGATC 5 cut(s) 410, 485, 779, 1150, 1366
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 4 cut(s) 366, 606, 829, 1007
ApeKI GCWGC 3 cut(s) 6, 58, 1094
ApoI RAATTY 1 cut(s) 1117
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 2 cut(s) 181, 919
AspS9I GGNCC 4 cut(s) 352, 367, 1007, 1205
AsuC2I CCSGG 4 cut(s) 27, 371, 372, 1209
AsuHPI GGTGA 1 cut(s) 701
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 2 cut(s) 352, 1205
BanII GRGCYC 1 cut(s) 377
BauI CACGAG 2 cut(s) 140, 149
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 2 cut(s) 45, 1081
BccI CCATC 6 cut(s) 48, 119, 1198, 1264, 1307, 1349
BcgI CGANNNNNNTGC 4 cut(s) 1062, 1096, 1358, 1392
BciT130I CCWGG 1 cut(s) 740
BciVI GTATCC 1 cut(s) 23
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 4 cut(s) 27, 371, 372, 1209
BfaI CTAG 4 cut(s) 188, 594, 875, 1077
BfmI CTRYAG 2 cut(s) 318, 598
BfuAI ACCTGC 1 cut(s) 646
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 4 cut(s) 7, 10, 59, 1095
BlsI GCNGC 4 cut(s) 8, 11, 60, 1096
Bme1390I CCNGG 5 cut(s) 27, 371, 372, 740, 1209
Bme18I GGWCC 2 cut(s) 352, 1205
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 4 cut(s) 352, 367, 1007, 1205
BmiI GGNNCC 2 cut(s) 369, 376
BmrFI CCNGG 5 cut(s) 27, 371, 372, 740, 1209
BmsI GCATC 5 cut(s) 45, 556, 653, 940, 1082
BpiI GAAGAC 1 cut(s) 449
BplI GAGNNNNNCTC 5 cut(s) 1105, 1137, 1122, 1154, 1383
BpmI CTGGAG 1 cut(s) 1410
BpuMI CCSGG 4 cut(s) 27, 371, 372, 1209
BsaJI CCNNGG 2 cut(s) 369, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 4 cut(s) 168, 709, 1329, 1393
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 2 cut(s) 369, 370
BseGI GGATG 6 cut(s) 40, 114, 571, 644, 1252, 1256
BseLI CCNNNNNNNGG 1 cut(s) 32
BseNI ACTGG 4 cut(s) 168, 709, 1329, 1393
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 45, 1081
BseYI CCCAGC 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 277, 357
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 4 cut(s) 368, 608, 831, 1009
BsiEI CGRYCG 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 4 cut(s) 26, 371, 447, 1208
BslFI GGGAC 2 cut(s) 257, 524
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 257, 524
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 4 cut(s) 368, 608, 831, 1009
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
BspACI CCGC 6 cut(s) 9, 23, 275, 355, 1071, 1287
BspANI GGCC 4 cut(s) 368, 608, 831, 1009
BspFNI CGCG 2 cut(s) 277, 357
BspHI TCATGA 2 cut(s) 460, 556
BspLI GGNNCC 2 cut(s) 369, 376
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 5 cut(s) 410, 485, 779, 1150, 1366
BspQI GCTCTTC 2 cut(s) 771, 861
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 4 cut(s) 168, 709, 1329, 1393
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 369, 370
BssMI GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
BssNAI GTATAC 1 cut(s) 948
BssSI CACGAG 2 cut(s) 140, 149
Bst1107I GTATAC 1 cut(s) 948
Bst2BI CACGAG 2 cut(s) 140, 149
Bst2UI CCWGG 1 cut(s) 740
Bst4CI ACNGT 3 cut(s) 248, 602, 1306
Bst6I CTCTTC 3 cut(s) 723, 771, 861
BstC8I GCNNGC 2 cut(s) 137, 915
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 6 cut(s) 40, 114, 571, 644, 1252, 1256
BstFNI CGCG 2 cut(s) 277, 357
BstHHI GCGC 2 cut(s) 181, 919
BstKTI GATC 9 cut(s) 105, 405, 493, 556, 583, 787, 811, 1145, 1361
BstMBI GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 2 cut(s) 354, 1391
BstNI CCWGG 1 cut(s) 740
BstSCI CCNGG 5 cut(s) 25, 369, 370, 738, 1207
BstSFI CTRYAG 2 cut(s) 318, 598
BstUI CGCG 2 cut(s) 277, 357
BstV1I GCAGC 2 cut(s) 45, 1081
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 1 cut(s) 402
BstZ17I GTATAC 1 cut(s) 948
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 4 cut(s) 368, 608, 831, 1009
BtsCI GGATG 6 cut(s) 40, 114, 571, 644, 1252, 1256
BtsIMutI CAGTG 3 cut(s) 92, 1336, 1386
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 2 cut(s) 137, 915
CciI TCATGA 2 cut(s) 460, 556
CfoI GCGC 2 cut(s) 181, 919
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 4 cut(s) 352, 367, 1007, 1205
Cfr9I CCCGGG 1 cut(s) 370
Csp6I GTAC 2 cut(s) 262, 289
CviAII CATG 5 cut(s) 228, 422, 461, 557, 1223
CviQI GTAC 2 cut(s) 262, 289
DdeI CTNAG 1 cut(s) 62
DpnI GATC 9 cut(s) 104, 404, 492, 555, 582, 786, 810, 1144, 1360
DpnII GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eam1104I CTCTTC 3 cut(s) 723, 771, 861
EarI CTCTTC 3 cut(s) 723, 771, 861
EciI GGCGGA 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 352, 1205
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 5 cut(s) 231, 425, 464, 560, 1226
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 2 cut(s) 257, 524
FatI CATG 5 cut(s) 227, 421, 460, 556, 1222
FauI CCCGC 1 cut(s) 1294
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 947
Fnu4HI GCNGC 4 cut(s) 7, 10, 59, 1095
FokI GGATG 6 cut(s) 27, 101, 578, 631, 1243, 1259
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 4 cut(s) 7, 10, 59, 1095
FspBI CTAG 4 cut(s) 188, 594, 875, 1077
GlaI GCGC 2 cut(s) 180, 918
GluI GCNGC 4 cut(s) 7, 10, 59, 1095
GsaI CCCAGC 1 cut(s) 454
GsuI CTGGAG 1 cut(s) 1410
HaeIII GGCC 4 cut(s) 368, 608, 831, 1009
HapII CCGG 4 cut(s) 26, 371, 447, 1208
HhaI GCGC 2 cut(s) 181, 919
Hin1II CATG 5 cut(s) 231, 425, 464, 560, 1226
Hin6I GCGC 2 cut(s) 179, 917
HinP1I GCGC 2 cut(s) 179, 917
HinfI GANTC 8 cut(s) 36, 82, 95, 236, 330, 896, 1105, 1154
HpaII CCGG 4 cut(s) 26, 371, 447, 1208
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 2 cut(s) 948, 1366
Hpy188I TCNGA 7 cut(s) 100, 490, 553, 856, 1084, 1142, 1147
Hpy188III TCNNGA 7 cut(s) 127, 149, 334, 461, 557, 893, 1109
Hpy8I GTNNAC 2 cut(s) 948, 1366
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 6 cut(s) 320, 421, 821, 1020, 1162, 1262
HpyCH4III ACNGT 3 cut(s) 248, 602, 1306
HpyCH4V TGCA 6 cut(s) 90, 135, 227, 931, 1097, 1379
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 1391
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 5 cut(s) 231, 425, 464, 560, 1226
HspAI GCGC 2 cut(s) 179, 917
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
LguI GCTCTTC 2 cut(s) 771, 861
LmnI GCTCC 8 cut(s) 277, 311, 380, 574, 751, 1130, 1391, 1404
Lsp1109I GCAGC 2 cut(s) 45, 1081
LweI GCATC 5 cut(s) 45, 556, 653, 940, 1082
MaeI CTAG 4 cut(s) 188, 594, 875, 1077
MaeIII GTNAC 3 cut(s) 153, 1324, 1331
MalI GATC 9 cut(s) 104, 404, 492, 555, 582, 786, 810, 1144, 1360
MboI GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 5 cut(s) 637, 847, 1055, 1117, 1231
MlyI GAGTC 2 cut(s) 89, 245
MmeI TCCRAC 2 cut(s) 51, 333
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 407, 660
MslI CAYNNNNRTG 1 cut(s) 966
MspI CCGG 4 cut(s) 26, 371, 447, 1208
MspR9I CCNGG 5 cut(s) 27, 371, 372, 740, 1209
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 740
MvnI CGCG 2 cut(s) 277, 357
MwoI GCNNNNNNNGC 2 cut(s) 354, 1391
NciI CCSGG 4 cut(s) 27, 371, 372, 1209
NdeII GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
NlaIII CATG 5 cut(s) 231, 425, 464, 560, 1226
NlaIV GGNNCC 2 cut(s) 369, 376
NmuCI GTSAC 1 cut(s) 1331
PagI TCATGA 2 cut(s) 460, 556
PciSI GCTCTTC 2 cut(s) 771, 861
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 1341
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 6 cut(s) 36, 82, 330, 896, 1105, 1154
PkrI GCNGC 4 cut(s) 8, 11, 60, 1096
Ple19I CGATCG 1 cut(s) 583
PleI GAGTC 2 cut(s) 89, 244
PpsI GAGTC 2 cut(s) 89, 244
Psp6I CCWGG 1 cut(s) 738
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 369, 376
PspPI GGNCC 4 cut(s) 352, 367, 1007, 1205
PsuI RGATCY 1 cut(s) 402
PvuI CGATCG 1 cut(s) 583
RsaI GTAC 2 cut(s) 263, 290
RsaNI GTAC 2 cut(s) 262, 289
RseI CAYNNNNRTG 1 cut(s) 966
SapI GCTCTTC 2 cut(s) 771, 861
SaqAI TTAA 2 cut(s) 407, 660
SatI GCNGC 4 cut(s) 7, 10, 59, 1095
Sau3AI GATC 9 cut(s) 102, 402, 490, 553, 580, 784, 808, 1142, 1358
Sau96I GGNCC 4 cut(s) 352, 367, 1007, 1205
SchI GAGTC 2 cut(s) 89, 245
ScrFI CCNGG 5 cut(s) 27, 371, 372, 740, 1209
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 5 cut(s) 45, 556, 653, 940, 1082
SfcI CTRYAG 2 cut(s) 318, 598
SinI GGWCC 2 cut(s) 352, 1205
SmaI CCCGGG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 966
Sse9I AATT 5 cut(s) 637, 847, 1055, 1117, 1231
SsiI CCGC 6 cut(s) 9, 23, 275, 355, 1071, 1287
SspI AATATT 1 cut(s) 1033
SspMI CTAG 4 cut(s) 188, 594, 875, 1077
StyD4I CCNGG 5 cut(s) 25, 369, 370, 738, 1207
TaaI ACNGT 3 cut(s) 248, 602, 1306
TaqI TCGA 3 cut(s) 126, 579, 583
TasI AATT 5 cut(s) 637, 847, 1055, 1117, 1231
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 6 cut(s) 36, 82, 330, 896, 1105, 1154
Tru1I TTAA 2 cut(s) 407, 660
Tru9I TTAA 2 cut(s) 407, 660
TscAI CASTG 3 cut(s) 92, 1336, 1393
TseFI GTSAC 1 cut(s) 1331
TseI GCWGC 3 cut(s) 6, 58, 1094
Tsp45I GTSAC 1 cut(s) 1331
TspDTI ATGAA 4 cut(s) 449, 708, 984, 1146
TspGWI ACGGA 4 cut(s) 48, 777, 1215, 1350
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 3 cut(s) 92, 1336, 1393
VpaK11BI GGWCC 2 cut(s) 352, 1205
XapI RAATTY 1 cut(s) 1117
XmaI CCCGGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 947
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 4 cut(s) 188, 594, 875, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.