Rorug01G0111700
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000639
Physical Location & Seq
Reverse (-)
19877637 .. 19878766
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0111700.1

Sequence Viewer

Length: 639 bp
ATGAGGTGGATTATTGGCAATGGCAAGGATATTAAGTTCTGGACCTTTAATTGGGTTTATGACTTTCCTCTTATTAATCTGCTTGATGTCAATGCTAGAAATTCCATTAATATAGATGATTCAGTGTCAGATTATATTGACAATGGTTCTTGGAATAATGATAAACTGTCCCAAGTTCTGGATTCTTCTTCAATTAGAACAATTTTTCTTATTAACATTCGTTGCTGTCAGGTTGATGATAGGTCTGCCGACTTTTCTCCTGTCTCTGTTGTGCATGCTGTCGCTACCTTTGGTGCTGCGTATAGAGATCACAATGTTCAAGTTGTCCCTCCTCAAAAAATCAGAAACCACTTTGGTAACCCATTTGTTGCCGATTATCGGAATATTGGCTATGCTTCCATTGTTGTGGCTGAATATACTGCTCTCAAGGATGGTTTGTTTGCTGCTTTGAGATTCAACCATACTAGAATTCTTGTTGAAGGGGATTCTGCTCTAATCATTAACTGCTTCCTGCGCCGATCCCATTGTCCGTGGTTTGTTAAGTCTTTGGTCCGGGACATCATTTCCCTTGCAAAGTCCTTTGAAAGTATTTTCTTTTCCCATTGTGGGAGTGGTCAACTTTTGCTGGGCCCGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

212

Amino Acids

24.0

Weight (kDa)

7.04

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 115 - 201 3.1e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 178
AciI CCGC 1 cut(s) 632
AclWI GGATC 1 cut(s) 513
AcsI RAATTY 2 cut(s) 100, 468
AfiI CCNNNNNNNGG 4 cut(s) 51, 178, 378, 606
AgsI TTSAA 5 cut(s) 192, 320, 457, 479, 584
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 513
AoxI GGCC 1 cut(s) 628
ApaI GGGCCC 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 296, 443
ApoI RAATTY 2 cut(s) 100, 468
AseI ATTAAT 2 cut(s) 75, 108
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 4 cut(s) 42, 550, 628, 629
AsuC2I CCSGG 1 cut(s) 554
AvaII GGWCC 2 cut(s) 42, 550
BaeGI GKGCMC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 632
BbvI GCAGC 2 cut(s) 283, 430
BccI CCATC 1 cut(s) 425
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 2 cut(s) 96, 465
BisI GCNGC 2 cut(s) 297, 444
BlsI GCNGC 2 cut(s) 298, 445
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 2 cut(s) 42, 550
BmgT120I GGNCC 4 cut(s) 42, 550, 628, 629
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 530
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 178, 378, 606
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 4 cut(s) 51, 178, 378, 606
BseMI GCAATG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 2 cut(s) 283, 430
BseYI CCCAGC 1 cut(s) 625
BshFI GGCC 1 cut(s) 630
BsiSI CCGG 1 cut(s) 553
BslFI GGGAC 3 cut(s) 154, 311, 569
BslI CCNNNNNNNGG 4 cut(s) 51, 178, 378, 606
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 3 cut(s) 154, 311, 569
BsnI GGCC 1 cut(s) 630
Bsp120I GGGCCC 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 2 cut(s) 307, 518
BspACI CCGC 1 cut(s) 632
BspANI GGCC 1 cut(s) 630
BspLI GGNNCC 1 cut(s) 630
BspPI GGATC 1 cut(s) 513
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 2 cut(s) 307, 518
Bst4CI ACNGT 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 276, 632
BstDSI CCRYGG 1 cut(s) 530
BstEII GGTNACC 1 cut(s) 356
BstF5I GGATG 1 cut(s) 436
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 2 cut(s) 310, 521
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 307, 518
BstMWI GCNNNNNNNGC 2 cut(s) 513, 631
BstNSI RCATGY 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 552
BstSLI GKGCMC 1 cut(s) 632
BstV1I GCAGC 2 cut(s) 283, 430
BstXI CCANNNNNNTGG 1 cut(s) 406
BsuRI GGCC 1 cut(s) 630
BtgI CCRYGG 1 cut(s) 530
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 276, 632
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 4 cut(s) 42, 550, 628, 629
CviAII CATG 1 cut(s) 275
CviJI RGCY 3 cut(s) 390, 410, 630
CviKI_1 RGCY 3 cut(s) 390, 410, 630
DpnI GATC 2 cut(s) 309, 520
DpnII GATC 2 cut(s) 307, 518
Eco24I GRGCYC 1 cut(s) 632
Eco47I GGWCC 2 cut(s) 42, 550
Eco91I GGTNACC 1 cut(s) 356
EcoO65I GGTNACC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 632
FaeI CATG 1 cut(s) 278
FaiI YATR 8 cut(s) 60, 113, 135, 276, 303, 393, 417, 462
FaqI GGGAC 3 cut(s) 154, 311, 569
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 297, 444
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 297, 444
FspBI CTAG 2 cut(s) 96, 465
GlaI GCGC 1 cut(s) 515
GluI GCNGC 2 cut(s) 297, 444
GsaI CCCAGC 1 cut(s) 629
HaeIII GGCC 1 cut(s) 630
HapII CCGG 1 cut(s) 553
HhaI GCGC 1 cut(s) 516
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HinfI GANTC 4 cut(s) 119, 182, 453, 485
HpaII CCGG 1 cut(s) 553
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 3 cut(s) 130, 344, 381
Hpy188III TCNNGA 2 cut(s) 40, 179
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 274, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 513, 631
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 1 cut(s) 514
Kzo9I GATC 2 cut(s) 307, 518
LpnPI CCDG 7 cut(s) 25, 164, 215, 273, 524, 566, 611
Lsp1109I GCAGC 2 cut(s) 283, 430
MaeI CTAG 2 cut(s) 96, 465
MaeIII GTNAC 1 cut(s) 356
MalI GATC 2 cut(s) 309, 520
MboI GATC 2 cut(s) 307, 518
MboII GAAGA 2 cut(s) 177, 180
MhlI GDGCHC 1 cut(s) 632
MluCI AATT 5 cut(s) 49, 100, 192, 201, 468
MnlI CCTC 3 cut(s) 78, 339, 342
MseI TTAA 8 cut(s) 33, 48, 75, 108, 213, 501, 540, 637
MslI CAYNNNNRTG 1 cut(s) 404
MspI CCGG 1 cut(s) 553
MspR9I CCNGG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 513, 631
NciI CCSGG 1 cut(s) 554
NdeII GATC 2 cut(s) 307, 518
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 630
NspI RCATGY 1 cut(s) 278
PaeI GCATGC 1 cut(s) 278
PfeI GAWTC 4 cut(s) 119, 182, 453, 485
PflMI CCANNNNNTGG 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 2 cut(s) 298, 445
PshBI ATTAAT 2 cut(s) 75, 108
PspEI GGTNACC 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 625
PspN4I GGNNCC 1 cut(s) 630
PspOMI GGGCCC 1 cut(s) 628
PspPI GGNCC 4 cut(s) 42, 550, 628, 629
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 8 cut(s) 33, 48, 75, 108, 213, 501, 540, 637
SatI GCNGC 2 cut(s) 297, 444
Sau3AI GATC 2 cut(s) 307, 518
Sau96I GGNCC 4 cut(s) 42, 550, 628, 629
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 1 cut(s) 632
SetI ASST 5 cut(s) 8, 47, 234, 245, 290
SinI GGWCC 2 cut(s) 42, 550
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
SphI GCATGC 1 cut(s) 278
Sse9I AATT 5 cut(s) 49, 100, 192, 201, 468
SsiI CCGC 1 cut(s) 632
SspI AATATT 1 cut(s) 385
SspMI CTAG 2 cut(s) 96, 465
StyD4I CCNGG 1 cut(s) 552
TaaI ACNGT 1 cut(s) 168
TasI AATT 5 cut(s) 49, 100, 192, 201, 468
TfiI GAWTC 4 cut(s) 119, 182, 453, 485
Tru1I TTAA 8 cut(s) 33, 48, 75, 108, 213, 501, 540, 637
Tru9I TTAA 8 cut(s) 33, 48, 75, 108, 213, 501, 540, 637
TscAI CASTG 1 cut(s) 129
TseI GCWGC 2 cut(s) 296, 443
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 1 cut(s) 129
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 42, 550
VspI ATTAAT 2 cut(s) 75, 108
XapI RAATTY 2 cut(s) 100, 468
XceI RCATGY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XspI CTAG 2 cut(s) 96, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.