Rroxscaffold_4G00325280
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000639
Physical Location & Seq
Forward (+)
57005493 .. 57008490
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325280.1

Sequence Viewer

Length: 861 bp
ATGATAAGGATGCCCCATTCTGCGATCGAGGTAGCAGTAGCTGCAGTATGGCCAGCTGAAAAAAACTGGGCATCGGAAGAACTGGTAAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAACTGGTGGTGGTATGATTACAGAAGAAATTCTTCAGATTCCCATTGGCAATCCGCATGAATTGGAAGGCACGCAAACTGATCGTTGTCATTTAGATAAGAATGATCTCTCAAGCTCTGTTGAAGGCCAACCTGATAGAAGCAATTTGTCTGACCTGATTGAAGAGCTACTAGATAACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCGCCACCTCAACTGCATCAGCTACATCAGTCACGAATGTATACCACCAATGTCCATAATGATGAATGTCGTAAGAGGACATATCCATTTGAGGATAATGACCCTTCTTCTAAGAAGAAGAAGAATATTTCAACCAATGATGATGACGAATTAGTTAGCAACACCGCATCTAGTTCTGAAAATCAAGCTGCAAATATGATTCCAGAGGGATATTCTCAACTAGGAGCAAATCTGGGATCAGACTTTGATTCATTTTTGCCAAAGGATTACAATTATACATTACCATCAATAAACGGAGGACCGAGAGATTTTTCCCATGACAATAATTTCATTGAGTGGGATGATTTACTATCTTTATACGAAGTTAATGACTCTTCTGTCGCACAGTTCCCACATACAGTTATTGATGGAGTGGGGGAGGCATTGCTGGTGTCACAGCATCCCCCCAGTCAACTTTTGGTTGAAAGTGAGACGGGCAAATGCATATGGTTCAAATGCCATATGGTTCATATGAGTCCAGGCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

286

Amino Acids

31.76

Weight (kDa)

4.46

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 710
AccI GTMKAC 1 cut(s) 374
AciI CCGC 3 cut(s) 176, 329, 498
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 140
AgsI TTSAA 5 cut(s) 245, 284, 465, 797, 826
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 6 cut(s) 41, 56, 237, 289, 355, 521
AluI AGCT 6 cut(s) 41, 56, 237, 289, 355, 521
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 50, 247
ApeKI GCWGC 2 cut(s) 41, 521
ApoI RAATTY 1 cut(s) 150
Asp700I GAANNNNTTC 2 cut(s) 150, 153
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 632
AvaII GGWCC 1 cut(s) 632
BalI TGGCCA 1 cut(s) 52
BbvI GCAGC 2 cut(s) 28, 508
BccI CCATC 2 cut(s) 625, 734
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 852
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 3 cut(s) 293, 504, 554
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 42, 522
BlsI GCNGC 2 cut(s) 43, 523
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 632
BmrFI CCNGG 1 cut(s) 852
BmrI ACTGGG 3 cut(s) 76, 99, 774
BmsI GCATC 4 cut(s) 80, 358, 509, 781
BmuI ACTGGG 3 cut(s) 76, 99, 774
BpuEI CTTGAG 1 cut(s) 217
Bse1I ACTGG 5 cut(s) 71, 87, 105, 130, 780
Bse3DI GCAATG 1 cut(s) 755
BseBI CCWGG 1 cut(s) 852
BseGI GGATG 4 cut(s) 15, 325, 679, 772
BseMI GCAATG 1 cut(s) 755
BseNI ACTGG 5 cut(s) 71, 87, 105, 130, 780
BseXI GCAGC 2 cut(s) 28, 508
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 52, 249
BsiEI CGRYCG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 797
BsmBI CGTCTC 1 cut(s) 797
BsnI GGCC 2 cut(s) 52, 249
Bsp143I GATC 4 cut(s) 24, 202, 226, 569
BspACI CCGC 3 cut(s) 176, 329, 498
BspANI GGCC 2 cut(s) 52, 249
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 1 cut(s) 577
BspQI GCTCTTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 755
BsrI ACTGG 5 cut(s) 71, 87, 105, 130, 780
BssMI GATC 4 cut(s) 24, 202, 226, 569
BssNAI GTATAC 1 cut(s) 375
Bst1107I GTATAC 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 2 cut(s) 720, 733
Bst6I CTCTTC 2 cut(s) 279, 712
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 54, 194, 333
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 4 cut(s) 15, 325, 679, 772
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 4 cut(s) 27, 205, 229, 572
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 4 cut(s) 24, 202, 226, 569
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 28, 508
BstZ17I GTATAC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 52, 249
BtsCI GGATG 4 cut(s) 15, 325, 679, 772
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 54, 194, 333
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 632
CviAII CATG 2 cut(s) 179, 650
CviJI RGCY 8 cut(s) 41, 52, 56, 237, 249, 289, 355, 521
CviKI_1 RGCY 8 cut(s) 41, 52, 56, 237, 249, 289, 355, 521
DdeI CTNAG 1 cut(s) 444
DpnI GATC 4 cut(s) 26, 204, 228, 571
DpnII GATC 4 cut(s) 24, 202, 226, 569
DrdI GACNNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 2 cut(s) 279, 712
EarI CTCTTC 2 cut(s) 279, 712
EciI GGCGGA 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 850
EcoT22I ATGCAT 1 cut(s) 818
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 2 cut(s) 182, 653
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 2 cut(s) 178, 649
FauNDI CATATG 3 cut(s) 818, 834, 843
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 2 cut(s) 42, 522
FokI GGATG 4 cut(s) 22, 312, 686, 759
Fsp4HI GCNGC 2 cut(s) 42, 522
FspBI CTAG 3 cut(s) 293, 504, 554
GlaI GCGC 1 cut(s) 336
GluI GCNGC 2 cut(s) 42, 522
HaeIII GGCC 2 cut(s) 52, 249
HhaI GCGC 1 cut(s) 337
Hin1II CATG 2 cut(s) 182, 653
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 785
HindII GTYRAC 1 cut(s) 785
HinfI GANTC 6 cut(s) 160, 314, 532, 581, 704, 847
Hpy166II GTNNAC 2 cut(s) 375, 785
Hpy188I TCNGA 5 cut(s) 76, 159, 274, 511, 574
Hpy188III TCNNGA 3 cut(s) 311, 366, 536
Hpy8I GTNNAC 2 cut(s) 375, 785
HpyAV CCTTC 3 cut(s) 182, 239, 447
HpyCH4III ACNGT 2 cut(s) 720, 733
HpyCH4V TGCA 4 cut(s) 44, 349, 524, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 2 cut(s) 182, 653
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 4 cut(s) 24, 202, 226, 569
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 557
Lsp1109I GCAGC 2 cut(s) 28, 508
LweI GCATC 4 cut(s) 80, 358, 509, 781
MaeI CTAG 3 cut(s) 293, 504, 554
MaeIII GTNAC 2 cut(s) 363, 765
MalI GATC 4 cut(s) 26, 204, 228, 571
MboI GATC 4 cut(s) 24, 202, 226, 569
MboII GAAGA 9 cut(s) 89, 146, 158, 296, 432, 460, 463, 466, 699
MlsI TGGCCA 1 cut(s) 52
MluCI AATT 7 cut(s) 99, 150, 182, 265, 482, 604, 658
MluNI TGGCCA 1 cut(s) 52
MlyI GAGTC 2 cut(s) 698, 856
MnlI CCTC 7 cut(s) 22, 351, 402, 418, 532, 623, 745
Mox20I TGGCCA 1 cut(s) 52
Mph1103I ATGCAT 1 cut(s) 818
MroXI GAANNNNTTC 2 cut(s) 150, 153
MscI TGGCCA 1 cut(s) 52
MseI TTAA 1 cut(s) 699
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 52
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 852
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeI CATATG 3 cut(s) 818, 834, 843
NdeII GATC 4 cut(s) 24, 202, 226, 569
NlaIII CATG 2 cut(s) 182, 653
NmuCI GTSAC 2 cut(s) 363, 765
NsiI ATGCAT 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 279
PdmI GAANNNNTTC 2 cut(s) 150, 153
PfeI GAWTC 4 cut(s) 160, 314, 532, 581
PkrI GCNGC 2 cut(s) 43, 523
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 2 cut(s) 698, 855
PpsI GAGTC 2 cut(s) 698, 855
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspPI GGNCC 1 cut(s) 632
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 41
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 699
SatI GCNGC 2 cut(s) 42, 522
Sau3AI GATC 4 cut(s) 24, 202, 226, 569
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 2 cut(s) 698, 856
ScrFI CCNGG 1 cut(s) 852
SfaNI GCATC 4 cut(s) 80, 358, 509, 781
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 7 cut(s) 99, 150, 182, 265, 482, 604, 658
SsiI CCGC 3 cut(s) 176, 329, 498
SspI AATATT 1 cut(s) 460
SspMI CTAG 3 cut(s) 293, 504, 554
StyD4I CCNGG 1 cut(s) 850
TaaI ACNGT 2 cut(s) 720, 733
TaqI TCGA 1 cut(s) 27
TaqII GACCGA 1 cut(s) 649
TasI AATT 7 cut(s) 99, 150, 182, 265, 482, 604, 658
TfiI GAWTC 4 cut(s) 160, 314, 532, 581
Tru1I TTAA 1 cut(s) 699
Tru9I TTAA 1 cut(s) 699
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 363, 765
TseI GCWGC 2 cut(s) 41, 521
Tsp45I GTSAC 2 cut(s) 363, 765
TspDTI ATGAA 7 cut(s) 135, 195, 314, 411, 573, 652, 830
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 374
XmnI GAANNNNTTC 2 cut(s) 150, 153
XspI CTAG 3 cut(s) 293, 504, 554
Zsp2I ATGCAT 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.