Rw1G026650
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000639
Physical Location & Seq
Reverse (-)
53860310 .. 53862463
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026650.1

Sequence Viewer

Length: 1425 bp
ATGAGCTGCGGCGACTTCATAGTTCCGCCGGGATACCGATTCCATCCCACCGACGAGAGGCTGCTTCGTGACTTGGAGGAGAAGAACCGGTGCAAGGACTCCGAGACTCCCACCATCATCCCTGTTATCGAGATGTGCAAGCACGAGCCTCACGAGTTACCAGAACTGGCATTCACAAGGGCGCAAAATCTAGGCAGGAAGTTTTTCTCCTTTTTCTTCTTCTGCTTTGCATGGGCAGAGTCTTGGGACAGTCAGGGCAAGTGGTACTTCTTCACTCCGCGTGAATACAAGTACCCTAACAGCAGACGCTCCAACAGGACTACAGGGGAAGGGTTCTGGAAGATCACAGGCAAGGACCGCGACATCAAGGCCCCTGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCTTAACCTTCTACAAACGTGGAGGGCCGAAATCCCAGAGGACTGGCTGGGTCATTCATGAGTATTATCTCATTGAGGCACATTCTGATCCTCCTAAACAGATCGGGGACTTCGTTGTCTGTTGCTTGAAGTATAAGTCAAACAACTCTGATCATGATAAGATCTGCAGTATGGCCTCCAATGTAGAAAATCAAGCTGAAGAAGATTGGGCATCCATTGAGCAGGTTAATGTCGTTCCAATTCCCAATGGAAATGGTGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAATACCTGGCTTTAAAGGAGCTGGAAAATGCTCTTCAGAGTCCTATTGGCACTCCTCATGAATTCCAAGGCACGCAAACTGATCCTTGTCATATAGATAAGAATGATCTTTCGACCTCTGTTGAAGGCCGACCTGATAAGAGCAATTTGTCTGATATGATTGAAGAGCTGCTAGATGACCCAGAAAATCTGGATTCACTCTTTGATACGCCTGCGCCACCTCAACTGCATCAGCCACCAATGTATACCACCAATGACCATAATGATGAATGTCGTAAGAGGGCATATCCATTTGAGGACAATGAGCCTTCTCTTGTGAAGAAGAATAATATTTCAACCAATGACGATGACGAATTAGTTAGCAAGACCGCATCCCGTTCGGAAAATCAAGCTGCAAATATCAATATGATTCAAGAGAGATATTCTCAACAAGGAGCAAATCTGGGATCAGACTTTGATTCATTTCTGCCGAAGGATTACGATTATACACTACCATCAATAAACGGAGGACCGGGAGATTTTCCCCATGACAATAATTTTATTGAGTGGGATGATTTGCCATCCTTATACGAAGGTATGGACTATTCTCCCGCAAAGTTCTCACATACAGTTATTGATGGTGGTAAAGGAGTAACCAGTGACGGAAACACCGAAGTAGTAGATGGATCGGTAAACGATTATTCTGCATTAGCCACTGGAGCAACGCTCCAATGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

474

Amino Acids

53.46

Weight (kDa)

4.7

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 158 2.3e-28 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 619
AccI GTMKAC 1 cut(s) 950
AccII CGCG 2 cut(s) 280, 360
AciI CCGC 6 cut(s) 9, 26, 278, 358, 1074, 1296
AclWI GGATC 4 cut(s) 488, 782, 1159, 1378
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 2 cut(s) 624, 725
AfaI GTAC 2 cut(s) 266, 293
AfiI CCNNNNNNNGG 2 cut(s) 57, 94
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 5 cut(s) 535, 830, 869, 1041, 1118
AjnI CCWGG 2 cut(s) 373, 711
AluBI AGCT 8 cut(s) 6, 386, 602, 671, 727, 874, 1097, 1422
AluI AGCT 8 cut(s) 6, 386, 602, 671, 727, 874, 1097, 1422
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 4 cut(s) 488, 782, 1159, 1378
AoxI GGCC 4 cut(s) 369, 431, 579, 832
ApeKI GCWGC 4 cut(s) 6, 61, 874, 1097
ApoI RAATTY 1 cut(s) 767
AsiGI ACCGGT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 184, 922
AspS9I GGNCC 5 cut(s) 355, 370, 405, 431, 1214
AsuC2I CCSGG 2 cut(s) 30, 1218
AsuHPI GGTGA 1 cut(s) 674
AvaII GGWCC 3 cut(s) 355, 405, 1214
BauI CACGAG 2 cut(s) 143, 152
BbvI GCAGC 3 cut(s) 48, 861, 1084
BccI CCATC 6 cut(s) 51, 122, 1207, 1273, 1316, 1361
BcgI CGANNNNNNTGC 4 cut(s) 1065, 1099, 1370, 1404
BciT130I CCWGG 2 cut(s) 375, 713
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 2 cut(s) 30, 1218
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 191, 878
BfmI CTRYAG 2 cut(s) 321, 571
BfuAI ACCTGC 1 cut(s) 619
BfuI GTATCC 1 cut(s) 26
BglII AGATCT 1 cut(s) 567
BisI GCNGC 5 cut(s) 7, 10, 62, 875, 1098
BlsI GCNGC 5 cut(s) 8, 11, 63, 876, 1099
Bme1390I CCNGG 4 cut(s) 30, 375, 713, 1218
Bme18I GGWCC 3 cut(s) 355, 405, 1214
BmgT120I GGNCC 5 cut(s) 355, 370, 405, 431, 1214
BmiI GGNNCC 2 cut(s) 372, 379
BmrFI CCNGG 4 cut(s) 30, 375, 713, 1218
BmsI GCATC 3 cut(s) 626, 943, 1085
BplI GAGNNNNNCTC 3 cut(s) 1114, 1146, 1395
BpmI CTGGAG 1 cut(s) 1422
BpuMI CCSGG 2 cut(s) 30, 1218
BsaJI CCNNGG 2 cut(s) 373, 772
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 94
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 5 cut(s) 171, 454, 682, 1341, 1405
BseBI CCWGG 2 cut(s) 375, 713
BseDI CCNNGG 2 cut(s) 373, 772
BseGI GGATG 6 cut(s) 43, 117, 617, 1076, 1261, 1265
BseLI CCNNNNNNNGG 2 cut(s) 57, 94
BseNI ACTGG 5 cut(s) 171, 454, 682, 1341, 1405
BseRI GAGGAG 2 cut(s) 92, 750
BseXI GCAGC 3 cut(s) 48, 861, 1084
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 280, 360
BshFI GGCC 4 cut(s) 371, 433, 581, 834
BshTI ACCGGT 1 cut(s) 87
BsiSI CCGG 3 cut(s) 29, 88, 1217
BslFI GGGAC 2 cut(s) 260, 527
BslI CCNNNNNNNGG 2 cut(s) 57, 94
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 260, 527
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 4 cut(s) 371, 433, 581, 834
Bsp143I GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
BspACI CCGC 6 cut(s) 9, 26, 278, 358, 1074, 1296
BspANI GGCC 4 cut(s) 371, 433, 581, 834
BspFNI CGCG 2 cut(s) 280, 360
BspHI TCATGA 3 cut(s) 463, 559, 763
BspLI GGNNCC 2 cut(s) 372, 379
BspMAI CTGCAG 1 cut(s) 575
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 4 cut(s) 488, 782, 1159, 1378
BspQI GCTCTTC 2 cut(s) 744, 864
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 5 cut(s) 171, 454, 682, 1341, 1405
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 373, 772
BssMI GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
BssNAI GTATAC 1 cut(s) 951
BssSI CACGAG 2 cut(s) 143, 152
BssT1I CCWWGG 1 cut(s) 772
Bst1107I GTATAC 1 cut(s) 951
Bst2BI CACGAG 2 cut(s) 143, 152
Bst2UI CCWGG 2 cut(s) 375, 713
Bst4CI ACNGT 2 cut(s) 251, 1315
Bst6I CTCTTC 3 cut(s) 696, 744, 864
BstC8I GCNNGC 3 cut(s) 140, 779, 918
BstF5I GGATG 6 cut(s) 43, 117, 617, 1076, 1261, 1265
BstFNI CGCG 2 cut(s) 280, 360
BstHHI GCGC 2 cut(s) 184, 922
BstKTI GATC 9 cut(s) 345, 496, 510, 559, 570, 790, 814, 1154, 1373
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
BstMWI GCNNNNNNNGC 2 cut(s) 357, 1403
BstNI CCWGG 2 cut(s) 375, 713
BstSCI CCNGG 4 cut(s) 28, 373, 711, 1216
BstSFI CTRYAG 2 cut(s) 321, 571
BstUI CGCG 2 cut(s) 280, 360
BstV1I GCAGC 3 cut(s) 48, 861, 1084
BstX2I RGATCY 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 1 cut(s) 567
BstZ17I GTATAC 1 cut(s) 951
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 4 cut(s) 371, 433, 581, 834
BtsCI GGATG 6 cut(s) 43, 117, 617, 1076, 1261, 1265
BtsIMutI CAGTG 2 cut(s) 1348, 1398
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 140, 779, 918
CciI TCATGA 3 cut(s) 463, 559, 763
CfoI GCGC 2 cut(s) 184, 922
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 5 cut(s) 355, 370, 405, 431, 1214
CseI GACGC 1 cut(s) 315
Csp6I GTAC 2 cut(s) 265, 292
CspAI ACCGGT 1 cut(s) 87
CviAII CATG 5 cut(s) 231, 464, 560, 764, 1232
CviQI GTAC 2 cut(s) 265, 292
DpnI GATC 9 cut(s) 344, 495, 509, 558, 569, 789, 813, 1153, 1372
DpnII GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
DraI TTTAAA 1 cut(s) 720
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 696, 744, 864
EarI CTCTTC 3 cut(s) 696, 744, 864
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 772
Eco47I GGWCC 3 cut(s) 355, 405, 1214
Eco57I CTGAAG 2 cut(s) 624, 725
EcoO109I RGGNCCY 2 cut(s) 370, 405
EcoRI GAATTC 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 373, 711
EcoT14I CCWWGG 1 cut(s) 772
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 5 cut(s) 234, 467, 563, 767, 1235
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 392, 424
FaqI GGGAC 2 cut(s) 260, 527
FatI CATG 5 cut(s) 230, 463, 559, 763, 1231
FauI CCCGC 1 cut(s) 1303
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 950
Fnu4HI GCNGC 5 cut(s) 7, 10, 62, 875, 1098
FokI GGATG 6 cut(s) 30, 104, 604, 1063, 1252, 1268
Fsp4HI GCNGC 5 cut(s) 7, 10, 62, 875, 1098
FspBI CTAG 2 cut(s) 191, 878
GlaI GCGC 2 cut(s) 183, 921
GluI GCNGC 5 cut(s) 7, 10, 62, 875, 1098
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 1422
HaeIII GGCC 4 cut(s) 371, 433, 581, 834
HapII CCGG 3 cut(s) 29, 88, 1217
HgaI GACGC 1 cut(s) 315
HhaI GCGC 2 cut(s) 184, 922
Hin1II CATG 5 cut(s) 234, 467, 563, 767, 1235
Hin6I GCGC 2 cut(s) 182, 920
HinP1I GCGC 2 cut(s) 182, 920
HinfI GANTC 8 cut(s) 39, 98, 106, 239, 745, 899, 1114, 1163
HpaII CCGG 3 cut(s) 29, 88, 1217
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 2 cut(s) 951, 1378
Hpy188I TCNGA 7 cut(s) 103, 493, 556, 744, 859, 1087, 1156
Hpy188III TCNNGA 9 cut(s) 68, 130, 152, 337, 464, 560, 764, 896, 1118
Hpy8I GTNNAC 2 cut(s) 951, 1378
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 323, 424, 824, 1023, 1171, 1271
HpyCH4III ACNGT 2 cut(s) 251, 1315
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 7 cut(s) 93, 138, 230, 573, 934, 1100, 1391
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 1403
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 5 cut(s) 234, 467, 563, 767, 1235
HspAI GCGC 2 cut(s) 182, 920
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
LguI GCTCTTC 2 cut(s) 744, 864
LmnI GCTCC 6 cut(s) 314, 383, 724, 1139, 1403, 1416
Lsp1109I GCAGC 3 cut(s) 48, 861, 1084
LweI GCATC 3 cut(s) 626, 943, 1085
MaeI CTAG 2 cut(s) 191, 878
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 4 cut(s) 68, 156, 1336, 1343
MalI GATC 9 cut(s) 344, 495, 509, 558, 569, 789, 813, 1153, 1372
MboI GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
MflI RGATCY 1 cut(s) 567
MluCI AATT 5 cut(s) 645, 767, 850, 1058, 1240
MlyI GAGTC 4 cut(s) 92, 100, 248, 754
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 3 cut(s) 410, 633, 719
MslI CAYNNNNRTG 1 cut(s) 969
MspI CCGG 3 cut(s) 29, 88, 1217
MspR9I CCNGG 4 cut(s) 30, 375, 713, 1218
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 2 cut(s) 375, 713
MvnI CGCG 2 cut(s) 280, 360
MwoI GCNNNNNNNGC 2 cut(s) 357, 1403
NciI CCSGG 2 cut(s) 30, 1218
NdeII GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
NlaIII CATG 5 cut(s) 234, 467, 563, 767, 1235
NlaIV GGNNCC 2 cut(s) 372, 379
NmuCI GTSAC 2 cut(s) 68, 1343
PagI TCATGA 3 cut(s) 463, 559, 763
PciSI GCTCTTC 2 cut(s) 744, 864
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 516, 1353
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 4 cut(s) 39, 899, 1114, 1163
PinAI ACCGGT 1 cut(s) 87
PkrI GCNGC 5 cut(s) 8, 11, 63, 876, 1099
PleI GAGTC 4 cut(s) 92, 100, 247, 753
PpsI GAGTC 4 cut(s) 92, 100, 247, 753
PpuMI RGGWCCY 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 2 cut(s) 373, 711
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 2 cut(s) 373, 711
PspN4I GGNNCC 2 cut(s) 372, 379
PspPI GGNCC 5 cut(s) 355, 370, 405, 431, 1214
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 567
RsaI GTAC 2 cut(s) 266, 293
RsaNI GTAC 2 cut(s) 265, 292
RseI CAYNNNNRTG 1 cut(s) 969
SapI GCTCTTC 2 cut(s) 744, 864
SaqAI TTAA 3 cut(s) 410, 633, 719
SatI GCNGC 5 cut(s) 7, 10, 62, 875, 1098
Sau3AI GATC 9 cut(s) 342, 493, 507, 556, 567, 787, 811, 1151, 1370
Sau96I GGNCC 5 cut(s) 355, 370, 405, 431, 1214
SchI GAGTC 4 cut(s) 92, 100, 248, 754
ScrFI CCNGG 4 cut(s) 30, 375, 713, 1218
SfaNI GCATC 3 cut(s) 626, 943, 1085
SfcI CTRYAG 2 cut(s) 321, 571
SinI GGWCC 3 cut(s) 355, 405, 1214
SmiMI CAYNNNNRTG 1 cut(s) 969
Sse9I AATT 5 cut(s) 645, 767, 850, 1058, 1240
SsiI CCGC 6 cut(s) 9, 26, 278, 358, 1074, 1296
SspI AATATT 1 cut(s) 1036
SspMI CTAG 2 cut(s) 191, 878
StyD4I CCNGG 4 cut(s) 28, 373, 711, 1216
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 2 cut(s) 251, 1315
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 129, 818
TasI AATT 5 cut(s) 645, 767, 850, 1058, 1240
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 4 cut(s) 39, 899, 1114, 1163
Tru1I TTAA 3 cut(s) 410, 633, 719
Tru9I TTAA 3 cut(s) 410, 633, 719
TscAI CASTG 2 cut(s) 1348, 1405
TseFI GTSAC 2 cut(s) 68, 1343
TseI GCWGC 4 cut(s) 6, 61, 874, 1097
Tsp45I GTSAC 2 cut(s) 68, 1343
TspDTI ATGAA 6 cut(s) 7, 452, 681, 780, 987, 1155
TspGWI ACGGA 2 cut(s) 1224, 1362
TspRI CASTG 2 cut(s) 1348, 1405
VpaK11BI GGWCC 3 cut(s) 355, 405, 1214
XapI RAATTY 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 950
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 191, 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.