Rmu_sc0006101.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006101.1
OG0000639
Physical Location & Seq
Reverse (-)
7259 .. 8939
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006101.1_g000001.1.cds

Sequence Viewer

Length: 1365 bp
atgtgctgcagcggcttcacagttccgaagggataccgattccatccctccgacgaggagctgcttagtcactacttggagcagaagaataagtgcaaggactcccagatcactaccatcatccctgaaatcgatgtgtgcaagcacgagcctcgcgagttgccaggtaaaccatctccggaaccagaacaccatcaatttcagctattaatgatcatgataaggaaattcatgtgtattgtgttgcatttttgcagaactggcgttcaaaagggcggaaagtctgaagctgaaactggtggtggtatgattacagaagaagaggagtacctgactttaaaggagctgagagatgctcttcagattcccattggtaatccgcatgaattcgaagtccaaggcacgcaaactgatccttgtcctatagataagaatgatctttcaaccactgttgaaggccaacctgatagaagcaattcatctgatatgattaaagagctactagatgacccagaaaatctggattcactctttcttccgcctgcaccacctcaactacataactcaccaaccactgttgaaggccaacctgatagaagcaattcatctgatatgattaaagagctactagatgacccagaaaagctggattcactctttcgtcagcctgcaccacctcaactacataactcaccaatgtataccaccaatgtccataatgatgaatgtcgtaagaggacatgtccatttgaggataaaaacccttctcttacgaagaagaatattatttcaacaaatttcttgtttgtgatgaaacagctactagatgacccagaaaatctggattcactctttcatcagcctgcaccacctcaactacataactcaccaatgtataccaccaatgtccataatgatgaatgtcgtaagaggacatatccatttgaggataataacccttctcttacgaagaagaatattatttcaacaaatgatgatgacgaattagttagcaacaccgcatgtagttctgaaaatcaagctgcaaatatgattccagagggatattctcaactaggagcaaatctgggatcagaatttgattcatttctgccaaacgattacgattatacattaccatcaataaacggaggactgagagatttttccaatgacaataatttcattgagttggatgatttactatcttcatacgaaggtattgactcttctctcgcacagttcctacatacagttattgatggaggtagaggagtaaccagtgacagaaacaccgaagtagtacatggatcggtaaacgattattctgcagtagccattggagcaacgctccagcgtagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

454

Amino Acids

50.89

Weight (kDa)

4.67

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 701, 896
AccII CGCG 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 5 cut(s) 12, 276, 380, 539, 1020
AclWI GGATC 3 cut(s) 407, 1099, 1318
AcsI RAATTY 4 cut(s) 227, 386, 796, 1097
AcuI CTGAAG 2 cut(s) 306, 344
AfaI GTAC 2 cut(s) 329, 1305
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 6 cut(s) 269, 444, 455, 581, 792, 987
AjnI CCWGG 1 cut(s) 163
AlwI GGATC 3 cut(s) 407, 1099, 1318
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 2 cut(s) 457, 583
ApeKI GCWGC 4 cut(s) 6, 9, 61, 1043
ApoI RAATTY 4 cut(s) 227, 386, 796, 1097
AseI ATTAAT 1 cut(s) 209
Asp700I GAANNNNTTC 2 cut(s) 475, 601
AsuHPI GGTGA 3 cut(s) 558, 684, 879
AsuII TTCGAA 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 1213, 1245
BauI CACGAG 1 cut(s) 146
BbvI GCAGC 3 cut(s) 21, 48, 1030
BccI CCATC 6 cut(s) 51, 125, 181, 201, 1147, 1256
BcgI CGANNNNNNTGC 4 cut(s) 134, 168, 1310, 1344
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 213
BfaI CTAG 4 cut(s) 503, 629, 824, 1076
BfmI CTRYAG 3 cut(s) 7, 423, 1329
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 5 cut(s) 7, 10, 13, 62, 1044
BlsI GCNGC 5 cut(s) 8, 11, 14, 63, 1045
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 343
BplI GAGNNNNNCTC 3 cut(s) 340, 372, 1335
BpmI CTGGAG 1 cut(s) 1337
Bpu14I TTCGAA 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 265, 301, 1281
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 3 cut(s) 43, 120, 1201
BseMII CTCAG 2 cut(s) 338, 1148
BseNI ACTGG 3 cut(s) 265, 301, 1281
BseRI GAGGAG 3 cut(s) 71, 338, 1287
BseXI GCAGC 3 cut(s) 21, 48, 1030
BsgI GTGCAG 3 cut(s) 528, 654, 849
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 459, 585
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 179
BsnI GGCC 2 cut(s) 459, 585
Bsp119I TTCGAA 1 cut(s) 390
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 5 cut(s) 12, 276, 380, 539, 1020
BspANI GGCC 2 cut(s) 459, 585
BspCNI CTCAG 2 cut(s) 339, 1149
BspDI ATCGAT 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 178
BspFNI CGCG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 183
BspMAI CTGCAG 2 cut(s) 11, 1333
BspPI GGATC 3 cut(s) 407, 1099, 1318
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 390
BsrI ACTGG 3 cut(s) 265, 301, 1281
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
BssNAI GTATAC 2 cut(s) 702, 897
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 397
Bst1107I GTATAC 2 cut(s) 702, 897
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 5 cut(s) 22, 451, 577, 1242, 1255
Bst6I CTCTTC 3 cut(s) 315, 363, 1234
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 5 cut(s) 143, 404, 543, 669, 864
BstDEI CTNAG 3 cut(s) 65, 347, 1157
BstF5I GGATG 3 cut(s) 43, 120, 1201
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 6 cut(s) 111, 216, 415, 439, 1094, 1313
BstMBI GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
BstMWI GCNNNNNNNGC 3 cut(s) 12, 261, 1343
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 2 cut(s) 744, 1026
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 3 cut(s) 7, 423, 1329
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 21, 48, 1030
BstZ17I GTATAC 2 cut(s) 702, 897
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 2 cut(s) 459, 585
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 3 cut(s) 43, 120, 1201
BtsIMutI CAGTG 3 cut(s) 447, 573, 1288
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 5 cut(s) 143, 404, 543, 669, 864
CciI TCATGA 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 2 cut(s) 328, 1304
CviAII CATG 6 cut(s) 217, 232, 383, 741, 1023, 1307
CviQI GTAC 2 cut(s) 328, 1304
DdeI CTNAG 3 cut(s) 65, 347, 1157
DpnI GATC 6 cut(s) 110, 215, 414, 438, 1093, 1312
DpnII GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
DraI TTTAAA 1 cut(s) 339
Eam1104I CTCTTC 3 cut(s) 315, 363, 1234
EarI CTCTTC 3 cut(s) 315, 363, 1234
EciI GGCGGA 2 cut(s) 291, 528
Eco130I CCWWGG 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 306, 344
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 6 cut(s) 220, 235, 386, 744, 1026, 1310
FatI CATG 6 cut(s) 216, 231, 382, 740, 1022, 1306
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 2 cut(s) 701, 896
Fnu4HI GCNGC 5 cut(s) 7, 10, 13, 62, 1044
FokI GGATG 3 cut(s) 30, 107, 1208
Fsp4HI GCNGC 5 cut(s) 7, 10, 13, 62, 1044
FspBI CTAG 4 cut(s) 503, 629, 824, 1076
GluI GCNGC 5 cut(s) 7, 10, 13, 62, 1044
GsuI CTGGAG 1 cut(s) 1337
HaeIII GGCC 2 cut(s) 459, 585
HapII CCGG 1 cut(s) 179
Hin1II CATG 6 cut(s) 220, 235, 386, 744, 1026, 1310
HinfI GANTC 9 cut(s) 39, 101, 364, 524, 650, 845, 1054, 1103, 1226
HpaII CCGG 1 cut(s) 179
HphI GGTGA 3 cut(s) 558, 684, 879
Hpy166II GTNNAC 4 cut(s) 170, 702, 897, 1318
Hpy188I TCNGA 8 cut(s) 27, 52, 286, 363, 484, 610, 1033, 1096
Hpy188III TCNNGA 6 cut(s) 155, 179, 217, 521, 842, 1058
Hpy8I GTNNAC 4 cut(s) 170, 702, 897, 1318
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 22, 449, 575, 774, 969, 1211
HpyCH4III ACNGT 5 cut(s) 22, 451, 577, 1242, 1255
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 261, 1343
HpyF3I CTNAG 3 cut(s) 65, 347, 1157
Hsp92II CATG 6 cut(s) 220, 235, 386, 744, 1026, 1310
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 6 cut(s) 58, 79, 343, 1079, 1343, 1356
Lsp1109I GCAGC 3 cut(s) 21, 48, 1030
LweI GCATC 1 cut(s) 343
MaeI CTAG 4 cut(s) 503, 629, 824, 1076
MaeIII GTNAC 3 cut(s) 68, 1276, 1283
MalI GATC 6 cut(s) 110, 215, 414, 438, 1093, 1312
MboI GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
MluCI AATT 9 cut(s) 197, 227, 386, 475, 601, 796, 1004, 1097, 1180
MlyI GAGTC 2 cut(s) 95, 1220
MmeI TCCRAC 2 cut(s) 75, 1173
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 2 cut(s) 475, 601
MseI TTAA 4 cut(s) 209, 338, 492, 618
MslI CAYNNNNRTG 2 cut(s) 720, 915
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 12, 261, 1343
NdeII GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
NlaIII CATG 6 cut(s) 220, 235, 386, 744, 1026, 1310
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 2 cut(s) 68, 1283
NruI TCGCGA 1 cut(s) 156
NspI RCATGY 2 cut(s) 744, 1026
NspV TTCGAA 1 cut(s) 390
PagI TCATGA 1 cut(s) 216
PciI ACATGT 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 475, 601
PfeI GAWTC 7 cut(s) 39, 364, 524, 650, 845, 1054, 1103
PkrI GCNGC 5 cut(s) 8, 11, 14, 63, 1045
PleI GAGTC 2 cut(s) 95, 1220
PpsI GAGTC 2 cut(s) 95, 1220
PscI ACATGT 1 cut(s) 740
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 183
PstI CTGCAG 2 cut(s) 11, 1333
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 2 cut(s) 329, 1305
RsaNI GTAC 2 cut(s) 328, 1304
RseI CAYNNNNRTG 2 cut(s) 720, 915
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 4 cut(s) 209, 338, 492, 618
SatI GCNGC 5 cut(s) 7, 10, 13, 62, 1044
Sau3AI GATC 6 cut(s) 108, 213, 412, 436, 1091, 1310
SchI GAGTC 2 cut(s) 95, 1220
ScrFI CCNGG 1 cut(s) 165
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 3 cut(s) 7, 423, 1329
SfuI TTCGAA 1 cut(s) 390
SmiMI CAYNNNNRTG 2 cut(s) 720, 915
Sse9I AATT 9 cut(s) 197, 227, 386, 475, 601, 796, 1004, 1097, 1180
SsiI CCGC 5 cut(s) 12, 276, 380, 539, 1020
SspI AATATT 2 cut(s) 784, 979
SspMI CTAG 4 cut(s) 503, 629, 824, 1076
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 5 cut(s) 22, 451, 577, 1242, 1255
TaqI TCGA 2 cut(s) 132, 390
TasI AATT 9 cut(s) 197, 227, 386, 475, 601, 796, 1004, 1097, 1180
TatI WGTACW 1 cut(s) 1303
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 7 cut(s) 39, 364, 524, 650, 845, 1054, 1103
Tru1I TTAA 4 cut(s) 209, 338, 492, 618
Tru9I TTAA 4 cut(s) 209, 338, 492, 618
TscAI CASTG 3 cut(s) 454, 580, 1288
TseFI GTSAC 2 cut(s) 68, 1283
TseI GCWGC 4 cut(s) 6, 9, 61, 1043
Tsp45I GTSAC 2 cut(s) 68, 1283
TspGWI ACGGA 1 cut(s) 1164
TspRI CASTG 3 cut(s) 454, 580, 1288
VspI ATTAAT 1 cut(s) 209
XapI RAATTY 4 cut(s) 227, 386, 796, 1097
XceI RCATGY 2 cut(s) 744, 1026
XmiI GTMKAC 2 cut(s) 701, 896
XmnI GAANNNNTTC 2 cut(s) 475, 601
XspI CTAG 4 cut(s) 503, 629, 824, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.