Rmu_sc0007217.1_g000011
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007217.1
OG0000639
Physical Location & Seq
Forward (+)
45366 .. 46346
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007217.1_g000011.1.cds

Sequence Viewer

Length: 813 bp
atgagctgcggcgacttcacagttccaaagggataccaattccatccctccgatgaggagctgcttagtcactacttggaggagaagaatcagtgcaaggactcccagatcacgatcatcatccctgaaatcgatgtgtgcaagcacgagcctcacgagttaccagaactggcgttcacaagggcggaaagaaagtggtacttcttcactccgcgtgattacaagtacaataacagcactcgctccaacacgactacaggggaagggttttggaagatcacaggcaaggaccgtgcaatcaaggcccccggctccaaagctgtgattgggagaaagaggaccttgaccttctacaaacgtggagtgctgaaatcccagaagaccaactgggttattcatgagtattatctcattcaggcacattctgatcctcctaagcagataggggactttgttatctgctgcttgaagtacaagtcagacaactctgattatgataaggatgccccattctgcaatcaaggtagcagtagctgcagtatggcctccaatgttgaaaatcaagctgaagaaaacagggcatcggaagagctggtaaatgttgttccaattcccagtggaaatgatgatgaaactggtgctggtatgattacagaagaagaggaatacctgacattagaggaggtggaagatattcttcagattcccattggcaatccgcatgaattggaaggcacgcaaactgatccttgtcatttagataagaatgatctctcaagctctgttgaaggccaagcagatagaagcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

270

Amino Acids

30.58

Weight (kDa)

4.89

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 214
AciI CCGC 4 cut(s) 9, 185, 212, 719
AclWI GGATC 2 cut(s) 422, 740
AcuI CTGAAG 2 cut(s) 588, 683
AfaI GTAC 3 cut(s) 200, 227, 473
AgsI TTSAA 3 cut(s) 469, 557, 788
AluBI AGCT 7 cut(s) 6, 61, 320, 534, 566, 592, 780
AluI AGCT 7 cut(s) 6, 61, 320, 534, 566, 592, 780
AlwI GGATC 2 cut(s) 422, 740
AlwNI CAGNNNCTG 1 cut(s) 534
AoxI GGCC 3 cut(s) 303, 543, 790
ApeKI GCWGC 4 cut(s) 6, 61, 462, 534
Asp700I GAANNNNTTC 1 cut(s) 693
AspS9I GGNCC 3 cut(s) 289, 304, 339
AsuC2I CCSGG 1 cut(s) 309
AvaII GGWCC 2 cut(s) 289, 339
BauI CACGAG 2 cut(s) 146, 155
BbsI GAAGAC 1 cut(s) 386
BbvI GCAGC 3 cut(s) 48, 449, 521
BccI CCATC 1 cut(s) 51
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 309
BfmI CTRYAG 2 cut(s) 255, 535
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 5 cut(s) 7, 10, 62, 463, 535
BlsI GCNGC 5 cut(s) 8, 11, 63, 464, 536
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 289, 339
BmgT120I GGNCC 3 cut(s) 289, 304, 339
BmiI GGNNCC 2 cut(s) 306, 313
BmrFI CCNGG 1 cut(s) 309
BmrI ACTGGG 2 cut(s) 397, 609
BmsI GCATC 2 cut(s) 493, 590
BmuI ACTGGG 2 cut(s) 397, 609
BpiI GAAGAC 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 1 cut(s) 309
Bsa29I ATCGAT 1 cut(s) 132
BsaBI GATNNNNATC 2 cut(s) 113, 119
BsaJI CCNNGG 1 cut(s) 307
Bse1I ACTGG 4 cut(s) 174, 392, 615, 640
Bse8I GATNNNNATC 2 cut(s) 113, 119
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 307
BseGI GGATG 3 cut(s) 43, 120, 508
BseJI GATNNNNATC 2 cut(s) 113, 119
BseNI ACTGG 4 cut(s) 174, 392, 615, 640
BseRI GAGGAG 3 cut(s) 71, 95, 695
BseXI GCAGC 3 cut(s) 48, 449, 521
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 3 cut(s) 305, 545, 792
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 3 cut(s) 305, 545, 792
Bsp143I GATC 6 cut(s) 108, 114, 276, 427, 745, 769
BspACI CCGC 4 cut(s) 9, 185, 212, 719
BspANI GGCC 3 cut(s) 305, 545, 792
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 1 cut(s) 214
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 306, 313
BspMAI CTGCAG 1 cut(s) 539
BspPI GGATC 2 cut(s) 422, 740
BspQI GCTCTTC 1 cut(s) 582
BsrI ACTGG 4 cut(s) 174, 392, 615, 640
BssECI CCNNGG 1 cut(s) 307
BssMI GATC 6 cut(s) 108, 114, 276, 427, 745, 769
BssSI CACGAG 2 cut(s) 146, 155
Bst2BI CACGAG 2 cut(s) 146, 155
Bst4CI ACNGT 2 cut(s) 22, 293
Bst6I CTCTTC 2 cut(s) 582, 654
BstAPI GCANNNNNTGC 1 cut(s) 534
BstC8I GCNNGC 2 cut(s) 143, 737
BstDEI CTNAG 2 cut(s) 65, 435
BstF5I GGATG 3 cut(s) 43, 120, 508
BstFNI CGCG 1 cut(s) 214
BstKTI GATC 6 cut(s) 111, 117, 279, 430, 748, 772
BstMBI GATC 6 cut(s) 108, 114, 276, 427, 745, 769
BstMWI GCNNNNNNNGC 2 cut(s) 302, 534
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 255, 535
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 48, 449, 521
BstV2I GAAGAC 1 cut(s) 386
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 305, 545, 792
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 3 cut(s) 43, 120, 508
BtsIMutI CAGTG 2 cut(s) 98, 622
Cac8I GCNNGC 2 cut(s) 143, 737
CaiI CAGNNNCTG 1 cut(s) 534
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 3 cut(s) 289, 304, 339
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 3 cut(s) 199, 226, 472
CviAII CATG 2 cut(s) 398, 722
CviQI GTAC 3 cut(s) 199, 226, 472
DdeI CTNAG 2 cut(s) 65, 435
DpnI GATC 6 cut(s) 110, 116, 278, 429, 747, 771
DpnII GATC 6 cut(s) 108, 114, 276, 427, 745, 769
Eam1104I CTCTTC 2 cut(s) 582, 654
EarI CTCTTC 2 cut(s) 582, 654
EciI GGCGGA 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 289, 339
Eco57I CTGAAG 2 cut(s) 588, 683
EcoO109I RGGNCCY 2 cut(s) 304, 339
FaeI CATG 2 cut(s) 401, 725
FaiI YATR 5 cut(s) 399, 495, 542, 647, 723
FalI AAGNNNNNCTT 6 cut(s) 185, 217, 326, 358, 681, 713
FaqI GGGAC 1 cut(s) 461
FatI CATG 2 cut(s) 397, 721
Fnu4HI GCNGC 5 cut(s) 7, 10, 62, 463, 535
FokI GGATG 3 cut(s) 30, 107, 515
Fsp4HI GCNGC 5 cut(s) 7, 10, 62, 463, 535
GluI GCNGC 5 cut(s) 7, 10, 62, 463, 535
HaeIII GGCC 3 cut(s) 305, 545, 792
HapII CCGG 1 cut(s) 309
Hin1II CATG 2 cut(s) 401, 725
HinfI GANTC 3 cut(s) 88, 101, 703
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 6 cut(s) 52, 427, 481, 490, 586, 702
Hpy188III TCNNGA 3 cut(s) 112, 155, 398
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 4 cut(s) 257, 358, 725, 782
HpyCH4III ACNGT 2 cut(s) 22, 293
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 96, 141, 296, 516, 537
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 534
HpyF3I CTNAG 2 cut(s) 65, 435
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 2 cut(s) 401, 725
Kzo9I GATC 6 cut(s) 108, 114, 276, 427, 745, 769
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 58, 248, 317
Lsp1109I GCAGC 3 cut(s) 48, 449, 521
LweI GCATC 2 cut(s) 493, 590
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 68, 159
MalI GATC 6 cut(s) 110, 116, 278, 429, 747, 771
MboI GATC 6 cut(s) 108, 114, 276, 427, 745, 769
MluCI AATT 4 cut(s) 38, 609, 725, 808
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 693
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 302, 534
NciI CCSGG 1 cut(s) 309
NdeII GATC 6 cut(s) 108, 114, 276, 427, 745, 769
NlaIII CATG 2 cut(s) 401, 725
NlaIV GGNNCC 2 cut(s) 306, 313
NmuCI GTSAC 1 cut(s) 68
PagI TCATGA 1 cut(s) 397
PciSI GCTCTTC 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 88, 703
PkrI GCNGC 5 cut(s) 8, 11, 63, 464, 536
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 306, 313
PspPI GGNCC 3 cut(s) 289, 304, 339
PspPPI RGGWCCY 1 cut(s) 339
PsrI GAACNNNNNNTAC 2 cut(s) 588, 620
PstI CTGCAG 1 cut(s) 539
PstNI CAGNNNCTG 1 cut(s) 534
RsaI GTAC 3 cut(s) 200, 227, 473
RsaNI GTAC 3 cut(s) 199, 226, 472
SapI GCTCTTC 1 cut(s) 582
SatI GCNGC 5 cut(s) 7, 10, 62, 463, 535
Sau3AI GATC 6 cut(s) 108, 114, 276, 427, 745, 769
Sau96I GGNCC 3 cut(s) 289, 304, 339
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 309
SfaNI GCATC 2 cut(s) 493, 590
SfcI CTRYAG 2 cut(s) 255, 535
SinI GGWCC 2 cut(s) 289, 339
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 4 cut(s) 38, 609, 725, 808
SsiI CCGC 4 cut(s) 9, 185, 212, 719
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 22, 293
TaiI ACGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 132
TasI AATT 4 cut(s) 38, 609, 725, 808
TatI WGTACW 2 cut(s) 225, 471
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 88, 703
TscAI CASTG 2 cut(s) 98, 622
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 4 cut(s) 6, 61, 462, 534
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 386, 645, 738
TspRI CASTG 2 cut(s) 98, 622
VpaK11BI GGWCC 2 cut(s) 289, 339
XmnI GAANNNNTTC 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.