Rmu_sc0041549.1_g000001
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041549.1
OG0000639
Physical Location & Seq
Reverse (-)
2 .. 603
602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041549.1_g000001.1.cds

Sequence Viewer

Length: 518 bp
atgagctgcgaccatttcccagtggaattccgattccgtcccaccaaaacggagctgctgtgtgaccacttggcgaagaagaattggtgcaaggactcccaaatcatgtcgatcatccctgacatcgatctgtgcaagcacgagcctcgtgagctaccaggactggcgttcacaaggcaggaaaatctgggaaggaaactttacttcgatttcttctttcggtttacaagggcagagtcttggtatagtcagggcaagtggtacttcttcgcaccgcgtgaatataagtaccctaacagcactcgctccaacaggactacaggggaggggtcctggaaggtcacaggcaaggaccgcgacatcaaggccccgggctccgaagctgtgattgggaggaagaggatcttgaccttccaaaaacgtggagtgccgaaatcccacaagaccggctatgttattcatgagtattatcacattcagccccattctgaccctcctaagcagataggggactttgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

173

Amino Acids

20.45

Weight (kDa)

9.51

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 277, 357
AciI CCGC 2 cut(s) 275, 355
AclWI GGATC 1 cut(s) 410
AcsI RAATTY 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 2 cut(s) 263, 290
AjnI CCWGG 2 cut(s) 157, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 4 cut(s) 6, 55, 154, 383
AluI AGCT 4 cut(s) 6, 55, 154, 383
AlwI GGATC 1 cut(s) 410
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 6, 55
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 330, 352, 367
AsuC2I CCSGG 2 cut(s) 371, 372
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 2 cut(s) 330, 352
BanII GRGCYC 1 cut(s) 377
BauI CACGAG 2 cut(s) 140, 147
BbvI GCAGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 2 cut(s) 159, 334
BcnI CCSGG 2 cut(s) 371, 372
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 2 cut(s) 7, 56
BlsI GCNGC 2 cut(s) 8, 57
Bme1390I CCNGG 4 cut(s) 159, 334, 371, 372
Bme18I GGWCC 2 cut(s) 330, 352
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 3 cut(s) 330, 352, 367
BmiI GGNNCC 3 cut(s) 331, 369, 376
BmrFI CCNGG 4 cut(s) 159, 334, 371, 372
BmrI ACTGGG 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 2 cut(s) 371, 372
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 369, 370
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 2 cut(s) 20, 168
BseBI CCWGG 2 cut(s) 159, 334
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 369, 370
BseGI GGATG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 20, 168
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 2 cut(s) 277, 357
BshFI GGCC 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 371, 447
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 3 cut(s) 111, 127, 402
BspACI CCGC 2 cut(s) 275, 355
BspANI GGCC 1 cut(s) 368
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 2 cut(s) 277, 357
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 331, 369, 376
BspPI GGATC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 2 cut(s) 20, 168
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 2 cut(s) 369, 370
BssMI GATC 3 cut(s) 111, 127, 402
BssSI CACGAG 2 cut(s) 140, 147
Bst2BI CACGAG 2 cut(s) 140, 147
Bst2UI CCWGG 2 cut(s) 159, 334
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 277, 357
BstKTI GATC 3 cut(s) 114, 130, 405
BstMBI GATC 3 cut(s) 111, 127, 402
BstMWI GCNNNNNNNGC 2 cut(s) 151, 354
BstNI CCWGG 2 cut(s) 159, 334
BstSCI CCNGG 4 cut(s) 157, 332, 369, 370
BstSFI CTRYAG 1 cut(s) 318
BstUI CGCG 2 cut(s) 277, 357
BstV1I GCAGC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 1 cut(s) 402
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 3 cut(s) 330, 352, 367
Cfr9I CCCGGG 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 2 cut(s) 262, 289
CviAII CATG 2 cut(s) 106, 461
CviJI RGCY 9 cut(s) 6, 55, 145, 154, 368, 375, 383, 450, 481
CviKI_1 RGCY 9 cut(s) 6, 55, 145, 154, 368, 375, 383, 450, 481
CviQI GTAC 2 cut(s) 262, 289
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 113, 129, 404
DpnII GATC 3 cut(s) 111, 127, 402
DraIII CACNNNGTG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 330, 352
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 2 cut(s) 330, 367
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 2 cut(s) 157, 332
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 2 cut(s) 109, 464
FaiI YATR 5 cut(s) 107, 246, 285, 453, 462
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 389, 421
FaqI GGGAC 1 cut(s) 24
FatI CATG 2 cut(s) 105, 460
Fnu4HI GCNGC 2 cut(s) 7, 56
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 7, 56
GluI GCNGC 2 cut(s) 7, 56
HaeIII GGCC 1 cut(s) 368
HapII CCGG 2 cut(s) 371, 447
Hin1II CATG 2 cut(s) 109, 464
HinfI GANTC 3 cut(s) 33, 95, 236
HpaII CCGG 2 cut(s) 371, 447
Hpy166II GTNNAC 2 cut(s) 171, 225
Hpy188I TCNGA 3 cut(s) 32, 379, 490
Hpy188III TCNNGA 3 cut(s) 149, 406, 461
Hpy8I GTNNAC 2 cut(s) 171, 225
HpyAV CCTTC 3 cut(s) 186, 331, 421
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 90, 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 354
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 2 cut(s) 109, 464
Kzo9I GATC 3 cut(s) 111, 127, 402
LmnI GCTCC 3 cut(s) 52, 311, 380
Lsp1109I GCAGC 1 cut(s) 42
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 62, 340
MalI GATC 3 cut(s) 113, 129, 404
MboI GATC 3 cut(s) 111, 127, 402
MboII GAAGA 5 cut(s) 88, 91, 205, 259, 409
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 2 cut(s) 26, 82
MlyI GAGTC 2 cut(s) 89, 245
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 5 cut(s) 156, 319, 387, 393, 504
MspI CCGG 2 cut(s) 371, 447
MspR9I CCNGG 4 cut(s) 159, 334, 371, 372
MvaI CCWGG 2 cut(s) 159, 334
MvnI CGCG 2 cut(s) 277, 357
MwoI GCNNNNNNNGC 2 cut(s) 151, 354
NciI CCSGG 2 cut(s) 371, 372
NdeII GATC 3 cut(s) 111, 127, 402
NlaIII CATG 2 cut(s) 109, 464
NlaIV GGNNCC 3 cut(s) 331, 369, 376
NmuCI GTSAC 2 cut(s) 62, 340
PagI TCATGA 1 cut(s) 460
PfeI GAWTC 1 cut(s) 33
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 2 cut(s) 8, 57
PleI GAGTC 2 cut(s) 89, 244
PpsI GAGTC 2 cut(s) 89, 244
PpuMI RGGWCCY 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 157, 332
PspGI CCWGG 2 cut(s) 157, 332
PspN4I GGNNCC 3 cut(s) 331, 369, 376
PspPI GGNCC 3 cut(s) 330, 352, 367
PspPPI RGGWCCY 1 cut(s) 330
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 2 cut(s) 263, 290
RsaNI GTAC 2 cut(s) 262, 289
SatI GCNGC 2 cut(s) 7, 56
Sau3AI GATC 3 cut(s) 111, 127, 402
Sau96I GGNCC 3 cut(s) 330, 352, 367
SchI GAGTC 2 cut(s) 89, 245
ScrFI CCNGG 4 cut(s) 159, 334, 371, 372
SduI GDGCHC 1 cut(s) 377
SetI ASST 7 cut(s) 8, 57, 156, 342, 385, 413, 424
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 2 cut(s) 330, 352
SmaI CCCGGG 1 cut(s) 372
Sse9I AATT 2 cut(s) 26, 82
SsiI CCGC 2 cut(s) 275, 355
StyD4I CCNGG 4 cut(s) 157, 332, 369, 370
TaiI ACGT 1 cut(s) 424
TaqI TCGA 3 cut(s) 110, 126, 207
TasI AATT 2 cut(s) 26, 82
TfiI GAWTC 1 cut(s) 33
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 62, 340
TseI GCWGC 2 cut(s) 6, 55
Tsp45I GTSAC 2 cut(s) 62, 340
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 2 cut(s) 26, 65
TspMI CCCGGG 1 cut(s) 370
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 330, 352
XapI RAATTY 1 cut(s) 26
XmaI CCCGGG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.