Rmu_sc0026316.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026316.1
OG0000639
Physical Location & Seq
Reverse (-)
33 .. 594
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026316.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atggtctccaatgttgcaaatcaggctgaagaaaatttggcatctaatgagcaggttaatgttgttccaattcccaatgccaatgatggagaagctgaaactggtagtggtacgattactgaagcagaagaacgcctggcatttaagaagctgggagatgctcttcagattcccattggaaatcagcatgaagtccaaggcttgcaaattgatccttgtaatctttcgacctctgttgaaggtcaagctgatagaattaattcatctgatatgaatgaagagctactaaatgatccagaaaatatggattcgttgtttcatctacccgcggcacctctactgcatcagctacatcagtcaccaatgtataccaccaatgtccataatgatgaatgccgtaagaggaaattgttagaaaatatggacttaacattatctgatttacatcaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

151

Amino Acids

16.67

Weight (kDa)

4.41

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 368
AccII CGCG 1 cut(s) 329
AciI CCGC 2 cut(s) 327, 329
AclWI GGATC 2 cut(s) 206, 287
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 3 cut(s) 48, 141, 149
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 5 cut(s) 95, 151, 248, 283, 349
AluI AGCT 5 cut(s) 95, 151, 248, 283, 349
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 2 cut(s) 206, 287
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 351
BanI GGYRCC 1 cut(s) 331
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 50, 148, 352
BsaBI GATNNNNATC 1 cut(s) 444
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 196, 327
Bse1I ACTGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 196, 327
BseJI GATNNNNATC 1 cut(s) 444
BseNI ACTGG 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 211, 292
BspACI CCGC 2 cut(s) 327, 329
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 1 cut(s) 333
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 2 cut(s) 206, 287
BspQI GCTCTTC 2 cut(s) 168, 273
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 196, 327
BssMI GATC 2 cut(s) 211, 292
BssNAI GTATAC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 196
Bst1107I GTATAC 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 168, 273
BstC8I GCNNGC 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 2 cut(s) 214, 295
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 2 cut(s) 211, 292
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstUI CGCG 1 cut(s) 329
BstZ17I GTATAC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 203
Cfr42I CCGCGG 1 cut(s) 330
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 188
CviJI RGCY 7 cut(s) 26, 95, 151, 201, 248, 283, 349
CviKI_1 RGCY 7 cut(s) 26, 95, 151, 201, 248, 283, 349
CviQI GTAC 1 cut(s) 111
DpnI GATC 2 cut(s) 213, 294
DpnII GATC 2 cut(s) 211, 292
Eam1104I CTCTTC 2 cut(s) 168, 273
EarI CTCTTC 2 cut(s) 168, 273
Eco130I CCWWGG 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 10
Eco57I CTGAAG 3 cut(s) 48, 141, 149
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 191
FaiI YATR 6 cut(s) 189, 272, 305, 369, 384, 422
FatI CATG 1 cut(s) 187
FauI CCCGC 1 cut(s) 334
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 191
HinfI GANTC 2 cut(s) 169, 308
HphI GGTGA 1 cut(s) 351
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 168, 268, 439
Hpy188III TCNNGA 2 cut(s) 296, 449
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 17, 205, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 191
KspI CCGCGG 1 cut(s) 330
Kzo9I GATC 2 cut(s) 211, 292
LguI GCTCTTC 2 cut(s) 168, 273
LpnPI CCDG 7 cut(s) 8, 38, 87, 122, 137, 149, 309
LweI GCATC 3 cut(s) 50, 148, 352
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 213, 294
MboI GATC 2 cut(s) 211, 292
MboII GAAGA 4 cut(s) 41, 140, 155, 290
MluCI AATT 6 cut(s) 34, 69, 207, 255, 259, 407
MnlI CCTC 3 cut(s) 241, 345, 396
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 4 cut(s) 57, 144, 258, 428
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 137
Mva1269I GAATGC 1 cut(s) 398
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 211, 292
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 357
PciSI GCTCTTC 2 cut(s) 168, 273
PctI GAATGC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 169, 308
PkrI GCNGC 1 cut(s) 331
PshBI ATTAAT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 333
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 387
SacII CCGCGG 1 cut(s) 330
SapI GCTCTTC 2 cut(s) 168, 273
SaqAI TTAA 4 cut(s) 57, 144, 258, 428
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 211, 292
ScrFI CCNGG 1 cut(s) 137
SetI ASST 9 cut(s) 57, 97, 153, 233, 244, 250, 285, 337, 351
SfaNI GCATC 3 cut(s) 50, 148, 352
Sfr303I CCGCGG 1 cut(s) 330
SgrBI CCGCGG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 6 cut(s) 34, 69, 207, 255, 259, 407
SsiI CCGC 2 cut(s) 327, 329
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 227
TasI AATT 6 cut(s) 34, 69, 207, 255, 259, 407
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 169, 308
Tru1I TTAA 4 cut(s) 57, 144, 258, 428
Tru9I TTAA 4 cut(s) 57, 144, 258, 428
TseFI GTSAC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 6 cut(s) 204, 252, 287, 291, 308, 405
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.