Rmu_sc0038193.1_g000002
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038193.1
OG0000639
Physical Location & Seq
Forward (+)
2506 .. 3180
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038193.1_g000002.1.cds

Sequence Viewer

Length: 591 bp
atgagctggggccttttcagagttcctccagggtaccgataccgtcctactgacgaggagctgctgagtgacttggagaagcagaatcagggcaaggactcccaaatcatgtccatcatccctgaaatcgaggtgtgcaagcacgagcctcgtgagctaccagaactggcgtttagaaggcagcaaaatctggggcggaagctcttctttttcttcttcttttggtttacaagggcagagtcttggtatagtcagggcaagtggtacttcttcgctccgcgtgaatacaagtaccctaagagtaatcgctccaacaggactacaggggaagggtcctggaaggtcacaagcaaggaccgagacatcaaggcgccgggcaccaaagctgtgattgggagaaagaggaccttgaccttctacattaaacgtggagtgctgaaaccccagaagaccggctgggttattcatgagtattatctcactcgggcaaattctgatgagcagataggggactttgttgtctgttgcttgaagtacaagtcagacaactctgatcatcatgaggatgccccattcctctatcgcggtagc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

197

Amino Acids

23.43

Weight (kDa)

9.5

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 3 cut(s) 33, 370, 377
AccII CGCG 2 cut(s) 280, 585
AciI CCGC 3 cut(s) 196, 278, 585
AcsI RAATTY 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 4 cut(s) 35, 266, 293, 536
AgsI TTSAA 1 cut(s) 532
AjnI CCWGG 2 cut(s) 28, 335
AluBI AGCT 5 cut(s) 6, 61, 157, 202, 386
AluI AGCT 5 cut(s) 6, 61, 157, 202, 386
Alw26I GTCTC 1 cut(s) 354
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 61, 181
ApoI RAATTY 1 cut(s) 490
Asp700I GAANNNNTTC 1 cut(s) 203
Asp718I GGTACC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 373
AspS9I GGNCC 4 cut(s) 10, 333, 355, 405
AsuC2I CCSGG 1 cut(s) 375
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 3 cut(s) 333, 355, 405
BaeGI GKGCMC 1 cut(s) 380
BanI GGYRCC 3 cut(s) 33, 370, 377
BauI CACGAG 2 cut(s) 143, 150
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 2 cut(s) 48, 193
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 2 cut(s) 30, 337
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 374
BisI GCNGC 2 cut(s) 62, 182
BlsI GCNGC 2 cut(s) 63, 183
Bme1390I CCNGG 3 cut(s) 30, 337, 375
Bme18I GGWCC 3 cut(s) 333, 355, 405
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 4 cut(s) 10, 333, 355, 405
BmiI GGNNCC 5 cut(s) 11, 35, 334, 372, 379
BmrFI CCNGG 3 cut(s) 30, 337, 375
BmsI GCATC 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 30, 337
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 117, 571
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 2 cut(s) 48, 193
BseYI CCCAGC 2 cut(s) 6, 456
Bsh1236I CGCG 2 cut(s) 280, 585
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 3 cut(s) 33, 370, 377
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 2 cut(s) 374, 453
BslFI GGGAC 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 1 cut(s) 553
BspACI CCGC 3 cut(s) 196, 278, 585
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 57
BspFNI CGCG 2 cut(s) 280, 585
BspHI TCATGA 2 cut(s) 466, 559
BspLI GGNNCC 5 cut(s) 11, 35, 334, 372, 379
BspQI GCTCTTC 1 cut(s) 209
BspT107I GGYRCC 3 cut(s) 33, 370, 377
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 553
BssNI GRCGYC 1 cut(s) 371
BssSI CACGAG 2 cut(s) 143, 150
Bst2BI CACGAG 2 cut(s) 143, 150
Bst2UI CCWGG 2 cut(s) 30, 337
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 65, 297
BstF5I GGATG 2 cut(s) 117, 571
BstFNI CGCG 2 cut(s) 280, 585
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 2 cut(s) 30, 337
BstSCI CCNGG 3 cut(s) 28, 335, 373
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 380
BstUI CGCG 2 cut(s) 280, 585
BstV1I GCAGC 2 cut(s) 48, 193
BstV2I GAAGAC 1 cut(s) 455
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 117, 571
Cac8I GCNNGC 1 cut(s) 140
CciI TCATGA 2 cut(s) 466, 559
CfoI GCGC 1 cut(s) 373
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 4 cut(s) 10, 333, 355, 405
Csp6I GTAC 4 cut(s) 34, 265, 292, 535
CviAII CATG 3 cut(s) 109, 467, 560
CviJI RGCY 8 cut(s) 6, 12, 61, 148, 157, 202, 386, 456
CviKI_1 RGCY 8 cut(s) 6, 12, 61, 148, 157, 202, 386, 456
CviQI GTAC 4 cut(s) 34, 265, 292, 535
DdeI CTNAG 2 cut(s) 65, 297
DinI GGCGCC 1 cut(s) 372
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
EciI GGCGGA 1 cut(s) 211
Eco47I GGWCC 3 cut(s) 333, 355, 405
Eco88I CYCGRG 1 cut(s) 483
EcoO109I RGGNCCY 3 cut(s) 10, 333, 405
EcoRII CCWGG 2 cut(s) 28, 335
EgeI GGCGCC 1 cut(s) 372
EheI GGCGCC 1 cut(s) 372
FaeI CATG 3 cut(s) 112, 470, 563
FaiI YATR 4 cut(s) 110, 249, 468, 561
FalI AAGNNNNNCTT 6 cut(s) 191, 223, 251, 283, 392, 424
FaqI GGGAC 1 cut(s) 524
FatI CATG 3 cut(s) 108, 466, 559
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 2 cut(s) 62, 182
FokI GGATG 2 cut(s) 104, 578
Fsp4HI GCNGC 2 cut(s) 62, 182
GlaI GCGC 1 cut(s) 372
GluI GCNGC 2 cut(s) 62, 182
GsaI CCCAGC 2 cut(s) 10, 460
GsuI CTGGAG 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 374
HaeIII GGCC 1 cut(s) 12
HapII CCGG 2 cut(s) 374, 453
HhaI GCGC 1 cut(s) 373
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 3 cut(s) 112, 470, 563
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HinfI GANTC 3 cut(s) 85, 98, 239
HpaII CCGG 2 cut(s) 374, 453
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 4 cut(s) 20, 496, 544, 553
Hpy188III TCNNGA 3 cut(s) 152, 467, 560
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 4 cut(s) 171, 323, 334, 424
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 65, 297
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 3 cut(s) 112, 470, 563
HspAI GCGC 1 cut(s) 371
KasI GGCGCC 1 cut(s) 370
KpnI GGTACC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 1 cut(s) 553
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 3 cut(s) 58, 280, 314
Lsp1109I GCAGC 2 cut(s) 48, 193
LweI GCATC 1 cut(s) 556
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 68, 343
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 5 cut(s) 196, 205, 208, 262, 460
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 1 cut(s) 490
Mly113I GGCGCC 1 cut(s) 371
MlyI GAGTC 2 cut(s) 92, 248
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 7 cut(s) 36, 49, 124, 159, 396, 556, 587
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 564
MspI CCGG 2 cut(s) 374, 453
MspR9I CCNGG 3 cut(s) 30, 337, 375
MvaI CCWGG 2 cut(s) 30, 337
MvnI CGCG 2 cut(s) 280, 585
MwoI GCNNNNNNNGC 1 cut(s) 154
NarI GGCGCC 1 cut(s) 371
NciI CCSGG 1 cut(s) 375
NdeII GATC 1 cut(s) 553
NlaIII CATG 3 cut(s) 112, 470, 563
NlaIV GGNNCC 5 cut(s) 11, 35, 334, 372, 379
NmuCI GTSAC 2 cut(s) 68, 343
PagI TCATGA 2 cut(s) 466, 559
PciSI GCTCTTC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 2 cut(s) 63, 183
PleI GAGTC 2 cut(s) 92, 247
PluTI GGCGCC 1 cut(s) 374
PpsI GAGTC 2 cut(s) 92, 247
PpuMI RGGWCCY 2 cut(s) 333, 405
Psp5II RGGWCCY 2 cut(s) 333, 405
Psp6I CCWGG 2 cut(s) 28, 335
PspFI CCCAGC 2 cut(s) 6, 456
PspGI CCWGG 2 cut(s) 28, 335
PspN4I GGNNCC 5 cut(s) 11, 35, 334, 372, 379
PspPI GGNCC 4 cut(s) 10, 333, 355, 405
PspPPI RGGWCCY 2 cut(s) 333, 405
RsaI GTAC 4 cut(s) 35, 266, 293, 536
RsaNI GTAC 4 cut(s) 34, 265, 292, 535
RseI CAYNNNNRTG 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 62, 182
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 4 cut(s) 10, 333, 355, 405
SchI GAGTC 2 cut(s) 92, 248
ScrFI CCNGG 3 cut(s) 30, 337, 375
SduI GDGCHC 1 cut(s) 380
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 321
SfoI GGCGCC 1 cut(s) 372
SinI GGWCC 3 cut(s) 333, 355, 405
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 1 cut(s) 490
SsiI CCGC 3 cut(s) 196, 278, 585
SspDI GGCGCC 1 cut(s) 370
StyD4I CCNGG 3 cut(s) 28, 335, 373
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 372
TasI AATT 1 cut(s) 490
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TseFI GTSAC 2 cut(s) 68, 343
TseI GCWGC 2 cut(s) 61, 181
Tsp45I GTSAC 2 cut(s) 68, 343
TspDTI ATGAA 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 333, 355, 405
XapI RAATTY 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.