Rroxscaffold_4G00294840
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000639
Physical Location & Seq
Forward (+)
14797208 .. 14802772
5565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294840.1

Sequence Viewer

Length: 1272 bp
ATGAGCTGCAGCGACTTCACAGTTCCGCCGGGATACCGATTCCATCCCACCGACGAGAAGCTGCTTAGTGACTTGGAGAAGAAGAATCAGTGCAAGGACTCCGAGATCACCACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCGCGAGTTACCAGAACTGGCATTCACAAGGGCGCAAAATCTGGGCAGGAAGTTTTTCTCTTTTTTCTTCTTCTGGTTTGCATGGGCAGAGTCTTGGGACAGTCAGGGCAAGTGGTACTTCTTCACTCCGCGTGAATACAAGTACCCTAACAGCAAACGCTCCAACAGGACTACAGGGGAAGGGTTCTGGAAGATCACAGGCAAGGACCGCGACATCAAGGCCCCTGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCTTAACCTTCTACAAACGTGGAGTGCCGAAACCCCAGAAGACTGGCTGGGTCATTCATGAGTTTTATCTCATTGAGGCACATTCTAATCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGTTGCTTGAAGTATAAGTCAGACAACTCTGATCATGATAAGGATGCCCCATTCTTCGATCGAGGTAGCACTAGCTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAATTGGGCATTAATTGAGCAGGTTAATGTTGTTCCAATTCACAATGGAAATGATGATGAAGCTGAAACTGGAGGTGGTATGATTACACTAGAAGAGGAATACCTGGCTTTAAAGGAACTGGAAGATGCTCTTCAGATTCCCATTGGCAATCCTCATGAATTCCAAGGCACGCAAACTGATCCTTGTCGTATAGATAAGAATGATCTTTCGACCTCTGTTGAAGGCCGACCTGATAAAAGCAATTCATCTGATGTGATTGAAGAGCCACTAGATAACCCAGAAAATCTGGATTCACTCTTTGATCCGCCTGCGCTGCCTCAACTGCATCAGCTACATCAGTCACCAATGTATACGACCAATGACCATACTGATGAATGTCGTAAGAGGACATATCCATTTGGGGATAATGACCCTTCACTTACGAAGAAGAATAGTATTTCAACCAATGATGACGACGAATTAGTTAGCAACACCGCATCTAGTTCAGAAAATCAAGCTGCAAATATGATTCCAGAGAGATATTCTCAACCAGGAGCAAATCTGGGATCAGACTATGATTCATTTCTGCCAAAGGATTACGTTTATACAATACCAGCCATCAATAAACGGAGGACCGGAAGATTTTCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

423

Amino Acids

48.16

Weight (kDa)

5.08

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 158 2.4e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 989
AccII CGCG 3 cut(s) 153, 280, 360
AciI CCGC 5 cut(s) 26, 278, 358, 944, 1113
AclWI GGATC 3 cut(s) 812, 935, 1192
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 2 cut(s) 654, 755
AfaI GTAC 2 cut(s) 266, 293
AgsI TTSAA 5 cut(s) 535, 623, 860, 899, 1080
AjnI CCWGG 3 cut(s) 373, 741, 1168
AluBI AGCT 8 cut(s) 6, 61, 386, 600, 632, 701, 970, 1136
AluI AGCT 8 cut(s) 6, 61, 386, 600, 632, 701, 970, 1136
AlwI GGATC 3 cut(s) 812, 935, 1192
AoxI GGCC 3 cut(s) 369, 609, 862
ApeKI GCWGC 6 cut(s) 6, 9, 61, 600, 952, 1136
ApoI RAATTY 1 cut(s) 797
AseI ATTAAT 1 cut(s) 650
Asp700I GAANNNNTTC 2 cut(s) 203, 1261
AspLEI GCGC 2 cut(s) 184, 952
AspS9I GGNCC 4 cut(s) 355, 370, 405, 1251
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 100, 972
AvaII GGWCC 3 cut(s) 355, 405, 1251
BauI CACGAG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 5 cut(s) 21, 48, 587, 939, 1123
BccI CCATC 3 cut(s) 51, 122, 1244
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 3 cut(s) 375, 743, 1170
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 30
BfaI CTAG 4 cut(s) 597, 728, 908, 1119
BfmI CTRYAG 3 cut(s) 7, 321, 601
BfuAI ACCTGC 1 cut(s) 649
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 6 cut(s) 7, 10, 62, 601, 953, 1137
BlsI GCNGC 6 cut(s) 8, 11, 63, 602, 954, 1138
Bme1390I CCNGG 4 cut(s) 30, 375, 743, 1170
Bme18I GGWCC 3 cut(s) 355, 405, 1251
BmgT120I GGNCC 4 cut(s) 355, 370, 405, 1251
BmiI GGNNCC 2 cut(s) 372, 379
BmrFI CCNGG 4 cut(s) 30, 375, 743, 1170
BmsI GCATC 4 cut(s) 559, 754, 973, 1124
BpiI GAAGAC 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 1147, 1179
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 373, 802
BsaWI WCCGGW 1 cut(s) 1253
Bse1I ACTGG 4 cut(s) 171, 454, 712, 762
BseBI CCWGG 3 cut(s) 375, 743, 1170
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 373, 802
BseGI GGATG 3 cut(s) 43, 117, 574
BseNI ACTGG 4 cut(s) 171, 454, 712, 762
BseXI GCAGC 5 cut(s) 21, 48, 587, 939, 1123
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 3 cut(s) 153, 280, 360
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 3 cut(s) 371, 611, 864
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 586
BsiSI CCGG 2 cut(s) 29, 1254
BslFI GGGAC 2 cut(s) 260, 527
BsmFI GGGAC 2 cut(s) 260, 527
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 3 cut(s) 371, 611, 864
Bsp143I GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 5 cut(s) 26, 278, 358, 944, 1113
BspANI GGCC 3 cut(s) 371, 611, 864
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 3 cut(s) 153, 280, 360
BspHI TCATGA 3 cut(s) 463, 559, 793
BspLI GGNNCC 2 cut(s) 372, 379
BspMAI CTGCAG 2 cut(s) 11, 605
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 3 cut(s) 812, 935, 1192
BspQI GCTCTTC 2 cut(s) 774, 894
BsrI ACTGG 4 cut(s) 171, 454, 712, 762
BssECI CCNNGG 2 cut(s) 373, 802
BssMI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
BssNAI GTATAC 1 cut(s) 990
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 802
Bst1107I GTATAC 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 375, 743, 1170
Bst4CI ACNGT 2 cut(s) 22, 251
Bst6I CTCTTC 3 cut(s) 726, 774, 894
BstAPI GCANNNNNTGC 1 cut(s) 600
BstC8I GCNNGC 3 cut(s) 140, 809, 948
BstDEI CTNAG 2 cut(s) 65, 501
BstF5I GGATG 3 cut(s) 43, 117, 574
BstFNI CGCG 3 cut(s) 153, 280, 360
BstHHI GCGC 2 cut(s) 184, 952
BstKTI GATC 8 cut(s) 108, 345, 559, 586, 820, 844, 943, 1187
BstMBI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 4 cut(s) 357, 600, 952, 961
BstNI CCWGG 3 cut(s) 375, 743, 1170
BstSCI CCNGG 4 cut(s) 28, 373, 741, 1168
BstSFI CTRYAG 3 cut(s) 7, 321, 601
BstUI CGCG 3 cut(s) 153, 280, 360
BstV1I GCAGC 5 cut(s) 21, 48, 587, 939, 1123
BstV2I GAAGAC 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 449
BstZ17I GTATAC 1 cut(s) 990
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 371, 611, 864
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 3 cut(s) 43, 117, 574
BtsIMutI CAGTG 1 cut(s) 95
BtuMI TCGCGA 1 cut(s) 153
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 3 cut(s) 140, 809, 948
CciI TCATGA 3 cut(s) 463, 559, 793
CfoI GCGC 2 cut(s) 184, 952
Cfr13I GGNCC 4 cut(s) 355, 370, 405, 1251
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 2 cut(s) 265, 292
CviAII CATG 5 cut(s) 231, 464, 560, 794, 1269
CviQI GTAC 2 cut(s) 265, 292
DdeI CTNAG 2 cut(s) 65, 501
DpnI GATC 8 cut(s) 107, 344, 558, 585, 819, 843, 942, 1186
DpnII GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
DraI TTTAAA 1 cut(s) 750
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 726, 774, 894
EarI CTCTTC 3 cut(s) 726, 774, 894
EciI GGCGGA 2 cut(s) 15, 933
Eco130I CCWWGG 1 cut(s) 802
Eco47I GGWCC 3 cut(s) 355, 405, 1251
Eco57I CTGAAG 2 cut(s) 654, 755
EcoO109I RGGNCCY 2 cut(s) 370, 405
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 3 cut(s) 373, 741, 1168
EcoT14I CCWWGG 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 5 cut(s) 234, 467, 563, 797, 1272
FalI AAGNNNNNCTT 6 cut(s) 251, 283, 392, 424, 753, 785
FaqI GGGAC 2 cut(s) 260, 527
FatI CATG 5 cut(s) 230, 463, 559, 793, 1268
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 989
Fnu4HI GCNGC 6 cut(s) 7, 10, 62, 601, 953, 1137
FokI GGATG 3 cut(s) 30, 104, 581
Fsp4HI GCNGC 6 cut(s) 7, 10, 62, 601, 953, 1137
FspBI CTAG 4 cut(s) 597, 728, 908, 1119
GlaI GCGC 2 cut(s) 183, 951
GluI GCNGC 6 cut(s) 7, 10, 62, 601, 953, 1137
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 371, 611, 864
HapII CCGG 2 cut(s) 29, 1254
HhaI GCGC 2 cut(s) 184, 952
Hin1II CATG 5 cut(s) 234, 467, 563, 797, 1272
Hin6I GCGC 2 cut(s) 182, 950
HinP1I GCGC 2 cut(s) 182, 950
HinfI GANTC 8 cut(s) 39, 85, 98, 239, 775, 929, 1147, 1196
HpaII CCGG 2 cut(s) 29, 1254
HphI GGTGA 2 cut(s) 100, 972
Hpy166II GTNNAC 1 cut(s) 990
Hpy188I TCNGA 7 cut(s) 103, 547, 556, 774, 889, 1126, 1189
Hpy188III TCNNGA 7 cut(s) 152, 337, 464, 560, 794, 926, 1151
Hpy8I GTNNAC 1 cut(s) 990
Hpy99I CGWCG 2 cut(s) 56, 1097
HpyAV CCTTC 4 cut(s) 323, 424, 854, 1062
HpyCH4III ACNGT 2 cut(s) 22, 251
HpyCH4IV ACGT 2 cut(s) 424, 1218
HpyCH4V TGCA 7 cut(s) 9, 93, 138, 230, 603, 964, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 357, 600, 952, 961
HpyF3I CTNAG 2 cut(s) 65, 501
HpySE526I ACGT 2 cut(s) 424, 1218
Hsp92II CATG 5 cut(s) 234, 467, 563, 797, 1272
HspAI GCGC 2 cut(s) 182, 950
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
LguI GCTCTTC 2 cut(s) 774, 894
LmnI GCTCC 3 cut(s) 314, 383, 1172
Lsp1109I GCAGC 5 cut(s) 21, 48, 587, 939, 1123
LweI GCATC 4 cut(s) 559, 754, 973, 1124
MaeI CTAG 4 cut(s) 597, 728, 908, 1119
MaeII ACGT 2 cut(s) 424, 1218
MaeIII GTNAC 3 cut(s) 68, 156, 978
MalI GATC 8 cut(s) 107, 344, 558, 585, 819, 843, 942, 1186
MboI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
MluCI AATT 6 cut(s) 640, 651, 675, 797, 880, 1097
MlyI GAGTC 2 cut(s) 92, 248
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 2 cut(s) 203, 1261
MseI TTAA 4 cut(s) 410, 650, 663, 749
MslI CAYNNNNRTG 1 cut(s) 1008
MspI CCGG 2 cut(s) 29, 1254
MspR9I CCNGG 4 cut(s) 30, 375, 743, 1170
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 3 cut(s) 375, 743, 1170
MvnI CGCG 3 cut(s) 153, 280, 360
MwoI GCNNNNNNNGC 4 cut(s) 357, 600, 952, 961
NciI CCSGG 1 cut(s) 30
NdeII GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
NlaIII CATG 5 cut(s) 234, 467, 563, 797, 1272
NlaIV GGNNCC 2 cut(s) 372, 379
NmuCI GTSAC 2 cut(s) 68, 978
NruI TCGCGA 1 cut(s) 153
PagI TCATGA 3 cut(s) 463, 559, 793
PciSI GCTCTTC 2 cut(s) 774, 894
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 2 cut(s) 203, 1261
PfeI GAWTC 6 cut(s) 39, 85, 775, 929, 1147, 1196
PkrI GCNGC 6 cut(s) 8, 11, 63, 602, 954, 1138
Ple19I CGATCG 1 cut(s) 586
PleI GAGTC 2 cut(s) 92, 247
PpsI GAGTC 2 cut(s) 92, 247
PpuMI RGGWCCY 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 650
Psp5II RGGWCCY 1 cut(s) 405
Psp6I CCWGG 3 cut(s) 373, 741, 1168
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 3 cut(s) 373, 741, 1168
PspN4I GGNNCC 2 cut(s) 372, 379
PspPI GGNCC 4 cut(s) 355, 370, 405, 1251
PspPPI RGGWCCY 1 cut(s) 405
PstI CTGCAG 2 cut(s) 11, 605
PvuI CGATCG 1 cut(s) 586
RruI TCGCGA 1 cut(s) 153
RsaI GTAC 2 cut(s) 266, 293
RsaNI GTAC 2 cut(s) 265, 292
RseI CAYNNNNRTG 1 cut(s) 1008
SapI GCTCTTC 2 cut(s) 774, 894
SaqAI TTAA 4 cut(s) 410, 650, 663, 749
SatI GCNGC 6 cut(s) 7, 10, 62, 601, 953, 1137
Sau3AI GATC 8 cut(s) 105, 342, 556, 583, 817, 841, 940, 1184
Sau96I GGNCC 4 cut(s) 355, 370, 405, 1251
SchI GAGTC 2 cut(s) 92, 248
ScrFI CCNGG 4 cut(s) 30, 375, 743, 1170
SfaNI GCATC 4 cut(s) 559, 754, 973, 1124
SfcI CTRYAG 3 cut(s) 7, 321, 601
SinI GGWCC 3 cut(s) 355, 405, 1251
SmiMI CAYNNNNRTG 1 cut(s) 1008
Sse9I AATT 6 cut(s) 640, 651, 675, 797, 880, 1097
SsiI CCGC 5 cut(s) 26, 278, 358, 944, 1113
SspMI CTAG 4 cut(s) 597, 728, 908, 1119
StyD4I CCNGG 4 cut(s) 28, 373, 741, 1168
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 2 cut(s) 22, 251
TaiI ACGT 2 cut(s) 427, 1221
TaqI TCGA 4 cut(s) 129, 582, 586, 848
TasI AATT 6 cut(s) 640, 651, 675, 797, 880, 1097
TfiI GAWTC 6 cut(s) 39, 85, 775, 929, 1147, 1196
Tru1I TTAA 4 cut(s) 410, 650, 663, 749
Tru9I TTAA 4 cut(s) 410, 650, 663, 749
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 68, 978
TseI GCWGC 6 cut(s) 6, 9, 61, 600, 952, 1136
Tsp45I GTSAC 2 cut(s) 68, 978
TspDTI ATGAA 6 cut(s) 452, 711, 810, 873, 1026, 1188
TspGWI ACGGA 1 cut(s) 1261
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 355, 405, 1251
VspI ATTAAT 1 cut(s) 650
XapI RAATTY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 989
XmnI GAANNNNTTC 2 cut(s) 203, 1261
XspI CTAG 4 cut(s) 597, 728, 908, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.