Rw1G026690
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000639
Physical Location & Seq
Reverse (-)
53904900 .. 53906507
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026690.1

Sequence Viewer

Length: 921 bp
ATGGTTTCCGATGTTGCAAATCAGCTGGTTGAAGAAAATTTGGCGTCCAATGAGCAGTTTAATGGCACTGATGATGAAACTGAAACTGGTGGCGGTACGATTACTGAAGCAGAAGAATACCTGGCATATAAGAAGCTGAGAGATGAGCTTCGGATTCCCATCGGAAATCAGAATGAATTCCAAGGCTCGCAGACTGATCCTTGTAATCTTTGGACCTCTGTTGAAGGTCAAGCTGATAGAAGCAATTCGTCTCATCATATGAATGAAGAGCAACTGGATGATTCAGAAAATATGGATTCCTTCTTTCGTACACCTGCGCCCCCTCAACTGCATCAGCTACATCAGTCACCGATGAATACCACCAATGTCCATAATGATGAATGCTGTAAGAGGAAATATCCATTTGAAGATAATGACTCTTCTCTTAATAAGAAGAACAATATTTCAAGCAATGATGGTGATGAACTAGTCAGCAACACCACTTCTAATTCTGAAAACCAAGCTGCAGATGTGATCCTAGAGGGTGACTCTGTTATCTGTCGCTTGAAGAATAAATCAGATAAGAAGGGTTCTCTTGTAAGTGATGAAGGGGAACCGGATAGCACGAGTGTGTCTAATTGGAAAATTCAGGCACTCAAAAATGATGAACCACTTTTTCATCAACCTCAGCCTCTGGATTACTGCTCCTCCTCTGCAGTGTGGACATCCTTAGAGCTGGAAGCTGTTCTGCAAGCCATTGGCACTGATGATGATTGTAATAAGTTGCAATCACCATGTGGAGATAATACTTCTTGTCTGGAAGACAAGAATGAAGTTTCAACCTGTGATGAAGATGAGAATATGGATGGTGTGTTTCCACAGGTAAGAATGAATGTGCATTTTGTAGTTAAACATTTTGACTATGAAGCCCAAGAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

306

Amino Acids

34.18

Weight (kDa)

4.25

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AciI CCGC 1 cut(s) 93
AclWI GGATC 2 cut(s) 191, 508
AcsI RAATTY 3 cut(s) 37, 176, 624
AcuI CTGAAG 1 cut(s) 126
AcyI GRCGYC 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 776
AfaI GTAC 2 cut(s) 97, 310
AgsI TTSAA 6 cut(s) 32, 224, 407, 447, 547, 819
AhlI ACTAGT 1 cut(s) 466
AjnI CCWGG 1 cut(s) 120
AleI CACNNNNGTG 1 cut(s) 608
AluBI AGCT 8 cut(s) 25, 136, 148, 233, 337, 503, 715, 722
AluI AGCT 8 cut(s) 25, 136, 148, 233, 337, 503, 715, 722
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 2 cut(s) 191, 508
AlwNI CAGNNNCTG 1 cut(s) 673
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 3 cut(s) 37, 176, 624
Asp700I GAANNNNTTC 3 cut(s) 176, 244, 723
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 4 cut(s) 339, 470, 536, 762
AvaII GGWCC 1 cut(s) 213
BauI CACGAG 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 807
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 490
BccI CCATC 3 cut(s) 167, 449, 839
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 2 cut(s) 467, 518
BfmI CTRYAG 3 cut(s) 504, 693, 917
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 2 cut(s) 512, 544
Bpu10I CCTNAGC 1 cut(s) 666
BsaBI GATNNNNATC 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bse1I ACTGG 2 cut(s) 91, 279
Bse3DI GCAATG 1 cut(s) 457
Bse8I GATNNNNATC 1 cut(s) 158
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 3 cut(s) 283, 704, 850
BseJI GATNNNNATC 1 cut(s) 158
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 128, 680
BseNI ACTGG 2 cut(s) 91, 279
BseRI GAGGAG 2 cut(s) 676, 679
BseXI GCAGC 1 cut(s) 490
BsiSI CCGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 255
BsmBI CGTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 386
Bsp143I GATC 2 cut(s) 196, 513
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 129, 679
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 2 cut(s) 508, 697
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 2 cut(s) 191, 508
BspQI GCTCTTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 2 cut(s) 91, 279
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 196, 513
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 604
BssT1I CCWWGG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 122
Bst6I CTCTTC 2 cut(s) 261, 424
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 188, 732
BstDEI CTNAG 3 cut(s) 137, 666, 709
BstF5I GGATG 3 cut(s) 283, 704, 850
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 199, 516
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 196, 513
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 3 cut(s) 504, 693, 917
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 807
BtsCI GGATG 3 cut(s) 283, 704, 850
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 3 cut(s) 66, 702, 741
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 188, 732
CaiI CAGNNNCTG 1 cut(s) 673
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 96, 309
CviAII CATG 1 cut(s) 774
CviQI GTAC 2 cut(s) 96, 309
DdeI CTNAG 3 cut(s) 137, 666, 709
DpnI GATC 2 cut(s) 198, 515
DpnII GATC 2 cut(s) 196, 513
DraIII CACNNNGTG 1 cut(s) 776
Eam1104I CTCTTC 2 cut(s) 261, 424
EarI CTCTTC 2 cut(s) 261, 424
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 1 cut(s) 777
FatI CATG 1 cut(s) 773
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 3 cut(s) 290, 691, 857
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 2 cut(s) 467, 518
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 504
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 777
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 5 cut(s) 154, 281, 296, 416, 527
HpaII CCGG 1 cut(s) 596
HphI GGTGA 4 cut(s) 339, 470, 536, 762
Hpy166II GTNNAC 2 cut(s) 311, 702
Hpy188I TCNGA 7 cut(s) 10, 153, 164, 171, 286, 493, 559
Hpy188III TCNNGA 2 cut(s) 674, 797
Hpy8I GTNNAC 2 cut(s) 311, 702
HpyAV CCTTC 4 cut(s) 218, 310, 559, 581
HpyCH4V TGCA 7 cut(s) 17, 331, 506, 695, 730, 766, 877
HpyF3I CTNAG 3 cut(s) 137, 666, 709
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 777
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 2 cut(s) 196, 513
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 467, 518
MaeIII GTNAC 2 cut(s) 345, 524
MalI GATC 2 cut(s) 198, 515
MboI GATC 2 cut(s) 196, 513
MboII GAAGA 9 cut(s) 44, 125, 278, 411, 419, 445, 559, 812, 842
MluCI AATT 6 cut(s) 37, 176, 244, 487, 616, 624
MlyI GAGTC 2 cut(s) 410, 521
MnlI CCTC 8 cut(s) 226, 333, 384, 514, 675, 681, 697, 700
MroXI GAANNNNTTC 3 cut(s) 176, 244, 723
MseI TTAA 3 cut(s) 60, 426, 888
MslI CAYNNNNRTG 3 cut(s) 261, 375, 608
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 122
NdeI CATATG 1 cut(s) 258
NdeII GATC 2 cut(s) 196, 513
NlaIII CATG 1 cut(s) 777
NlaIV GGNNCC 1 cut(s) 594
NmuCI GTSAC 2 cut(s) 345, 524
OliI CACNNNNGTG 1 cut(s) 608
PaqCI CACCTGC 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 261
PctI GAATGC 1 cut(s) 386
PdmI GAANNNNTTC 3 cut(s) 176, 244, 723
PfeI GAWTC 3 cut(s) 154, 281, 296
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 2 cut(s) 410, 521
PpsI GAGTC 2 cut(s) 410, 521
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 2 cut(s) 508, 697
PstNI CAGNNNCTG 1 cut(s) 673
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 97, 310
RsaNI GTAC 2 cut(s) 96, 309
RseI CAYNNNNRTG 3 cut(s) 261, 375, 608
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 60, 426, 888
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 2 cut(s) 196, 513
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 2 cut(s) 410, 521
ScrFI CCNGG 1 cut(s) 122
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 3 cut(s) 504, 693, 917
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 3 cut(s) 261, 375, 608
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 6 cut(s) 37, 176, 244, 487, 616, 624
SsiI CCGC 1 cut(s) 93
SspI AATATT 1 cut(s) 442
SspMI CTAG 2 cut(s) 467, 518
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 181
TasI AATT 6 cut(s) 37, 176, 244, 487, 616, 624
TfiI GAWTC 3 cut(s) 154, 281, 296
Tru1I TTAA 3 cut(s) 60, 426, 888
Tru9I TTAA 3 cut(s) 60, 426, 888
TscAI CASTG 3 cut(s) 73, 702, 748
TseFI GTSAC 2 cut(s) 345, 524
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 2 cut(s) 345, 524
TspRI CASTG 3 cut(s) 73, 702, 748
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 3 cut(s) 37, 176, 624
XmnI GAANNNNTTC 3 cut(s) 176, 244, 723
XspI CTAG 2 cut(s) 467, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.