Rmu_sc0006101.1_g000010
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006101.1
OG0000639
Physical Location & Seq
Reverse (-)
61824 .. 65570
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006101.1_g000010.1.cds

Sequence Viewer

Length: 1239 bp
atgtgctgcggcggcttcacagttccgaagggataccgattccatccctccgacgaggagctgcttagtcactacttggagcagaagaataagtgcaaggactcccagatcactaccatcatccctgaaatcgatgtgtgcaagcacgagcctcgcgagttgccagaactggcgttcacaagggcggaaagtctgggcacgaaatttttctcttttttcttcttttggtttgcaggggaagtgtcttgggacgatcagggaaagtggtacttcttcactccgcgtgattacaagtacaataacagcactcgctccaacaggactacaggggaagggttttggaagatcacaggcaaggaccgtgcaatcaatgcccccggctccaaagctgtgattgggagaaagaggaccctgaccttctacaaacgtggagtgccgaaattccagaagaccagctgggttattcatgagtattatctcattcaggcacattctgatcctcctaagcagaaaggggactttgttgtctgctgcttgaagtacaagtcagacaactttgatcatgataaggatgctccattctgcgatcgaggtagcagtagctgcagtatggcgtccaatgttgtaaatcaagctcaagaaaattgggcatcgaaagagctggttaatgttgttccaattcccagtggaaatgatgatgaagctgaaactggtggtggtatgattacagaagaagaggagtacctgactttaaaggagctgagagatgctcttcagattcccattggcaatccgcatgaattcgaagtccaaggcatgcaaactgatccttgtcctatagataagaatgatctttcaaccactgttgaaggccaacctgatagaagcagttcatctgatatgattaaagagctactagatgacccagaaaatctggattcactctttcatccgcctgcaccacctcaactacataactcaccaatgtataccaccaatgtccataatgatgaatgtcataagaggacatatccatttgaggataataacccttctcttacgaagaagaatattatttcaacaaatgatgatgacgaattagttagcaacaccgcatgtagttctgaaaatcaagctgcaaatatgattccagagcgtcccccagtgagcttttggttgaaactgagaccggctaatgcatatggttcaaatgccatccggaagtctaccttcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

412

Amino Acids

46.79

Weight (kDa)

5.33

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccI GTMKAC 2 cut(s) 989, 1226
AccII CGCG 2 cut(s) 156, 283
AccIII TCCGGA 1 cut(s) 1218
AciI CCGC 7 cut(s) 9, 12, 185, 281, 794, 953, 1113
AclWI GGATC 2 cut(s) 491, 821
AcsI RAATTY 3 cut(s) 203, 440, 800
AcuI CTGAAG 1 cut(s) 758
AcyI GRCGYC 1 cut(s) 614
AfaI GTAC 4 cut(s) 269, 296, 542, 743
AgsI TTSAA 6 cut(s) 538, 858, 869, 1080, 1180, 1209
Alw26I GTCTC 1 cut(s) 1180
AlwI GGATC 2 cut(s) 491, 821
AlwNI CAGNNNCTG 1 cut(s) 603
Aor13HI TCCGGA 1 cut(s) 1218
AoxI GGCC 1 cut(s) 871
ApeKI GCWGC 5 cut(s) 6, 61, 531, 603, 1136
ApoI RAATTY 3 cut(s) 203, 440, 800
Asp700I GAANNNNTTC 2 cut(s) 206, 889
AspS9I GGNCC 2 cut(s) 358, 408
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 972
AsuII TTCGAA 1 cut(s) 804
AvaII GGWCC 2 cut(s) 358, 408
BaeGI GKGCMC 1 cut(s) 200
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 4 cut(s) 48, 518, 590, 1123
BccI CCATC 3 cut(s) 51, 125, 1223
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 1180
BfaI CTAG 1 cut(s) 917
BfmI CTRYAG 3 cut(s) 324, 604, 837
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
BlsI GCNGC 7 cut(s) 8, 11, 14, 63, 533, 605, 1138
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 2 cut(s) 358, 408
BmgT120I GGNCC 2 cut(s) 358, 408
BmiI GGNNCC 2 cut(s) 382, 410
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 2 cut(s) 678, 1157
BmsI GCATC 3 cut(s) 562, 659, 757
BmuI ACTGGG 2 cut(s) 678, 1157
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 2 cut(s) 754, 786
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 1180
BsaJI CCNNGG 2 cut(s) 376, 811
BsaWI WCCGGW 1 cut(s) 1218
Bse118I RCCGGY 1 cut(s) 1189
Bse1I ACTGG 4 cut(s) 174, 684, 715, 1163
BseAI TCCGGA 1 cut(s) 1218
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 376, 811
BseGI GGATG 5 cut(s) 43, 120, 577, 949, 1215
BseMII CTCAG 2 cut(s) 752, 1175
BseNI ACTGG 4 cut(s) 174, 684, 715, 1163
BseRI GAGGAG 2 cut(s) 71, 752
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 4 cut(s) 48, 518, 590, 1123
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 2 cut(s) 156, 283
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 1 cut(s) 873
BshVI ATCGAT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 3 cut(s) 378, 1190, 1219
BslFI GGGAC 3 cut(s) 263, 530, 1143
BsmAI GTCTC 1 cut(s) 1180
BsmFI GGGAC 3 cut(s) 263, 530, 1143
BsnI GGCC 1 cut(s) 873
Bso31I GGTCTC 1 cut(s) 1180
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 1218
Bsp143I GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 7 cut(s) 9, 12, 185, 281, 794, 953, 1113
BspANI GGCC 1 cut(s) 873
BspCNI CTCAG 2 cut(s) 753, 1176
BspDI ATCGAT 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 1218
BspFNI CGCG 2 cut(s) 156, 283
BspHI TCATGA 2 cut(s) 466, 562
BspLI GGNNCC 2 cut(s) 382, 410
BspMAI CTGCAG 1 cut(s) 608
BspPI GGATC 2 cut(s) 491, 821
BspQI GCTCTTC 1 cut(s) 777
BspT104I TTCGAA 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 1180
BsrFI RCCGGY 1 cut(s) 1189
BsrI ACTGG 4 cut(s) 174, 684, 715, 1163
BssAI RCCGGY 1 cut(s) 1189
BssECI CCNNGG 2 cut(s) 376, 811
BssMI GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
BssNAI GTATAC 1 cut(s) 990
BssNI GRCGYC 1 cut(s) 614
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 811
Bst1107I GTATAC 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 22, 362, 865
Bst6I CTCTTC 2 cut(s) 729, 777
BstACI GRCGYC 1 cut(s) 614
BstAPI GCANNNNNTGC 2 cut(s) 371, 603
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 143, 818, 957
BstDEI CTNAG 4 cut(s) 65, 504, 761, 1184
BstF5I GGATG 5 cut(s) 43, 120, 577, 949, 1215
BstFNI CGCG 2 cut(s) 156, 283
BstKTI GATC 8 cut(s) 111, 256, 348, 499, 562, 589, 829, 853
BstMAI GTCTC 1 cut(s) 1180
BstMBI GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 3 cut(s) 12, 371, 603
BstNSI RCATGY 2 cut(s) 820, 1119
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 3 cut(s) 324, 604, 837
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 2 cut(s) 156, 283
BstV1I GCAGC 4 cut(s) 48, 518, 590, 1123
BstV2I GAAGAC 1 cut(s) 455
BstZ17I GTATAC 1 cut(s) 990
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 873
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 5 cut(s) 43, 120, 577, 949, 1215
BtsIMutI CAGTG 3 cut(s) 691, 861, 1170
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 143, 818, 957
CaiI CAGNNNCTG 1 cut(s) 603
CciI TCATGA 2 cut(s) 466, 562
Cfr10I RCCGGY 1 cut(s) 1189
Cfr13I GGNCC 2 cut(s) 358, 408
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 2 cut(s) 603, 1145
Csp6I GTAC 4 cut(s) 268, 295, 541, 742
CviAII CATG 5 cut(s) 467, 563, 797, 817, 1116
CviQI GTAC 4 cut(s) 268, 295, 541, 742
DdeI CTNAG 4 cut(s) 65, 504, 761, 1184
DpnI GATC 8 cut(s) 110, 255, 347, 498, 561, 588, 828, 852
DpnII GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
DraI TTTAAA 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 2 cut(s) 729, 777
EarI CTCTTC 2 cut(s) 729, 777
EciI GGCGGA 2 cut(s) 200, 942
Eco130I CCWWGG 1 cut(s) 811
Eco31I GGTCTC 1 cut(s) 1180
Eco47I GGWCC 2 cut(s) 358, 408
Eco57I CTGAAG 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 811
EcoT22I ATGCAT 1 cut(s) 1201
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 5 cut(s) 470, 566, 800, 820, 1119
FalI AAGNNNNNCTT 3 cut(s) 254, 286, 1214
FaqI GGGAC 3 cut(s) 263, 530, 1143
FatI CATG 5 cut(s) 466, 562, 796, 816, 1115
FauNDI CATATG 1 cut(s) 1201
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 2 cut(s) 989, 1226
Fnu4HI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
FokI GGATG 5 cut(s) 30, 107, 584, 936, 1202
Fsp4HI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
FspBI CTAG 1 cut(s) 917
GluI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
GsaI CCCAGC 1 cut(s) 460
HaeIII GGCC 1 cut(s) 873
HapII CCGG 3 cut(s) 378, 1190, 1219
HgaI GACGC 2 cut(s) 603, 1145
Hin1I GRCGYC 1 cut(s) 614
Hin1II CATG 5 cut(s) 470, 566, 800, 820, 1119
HinfI GANTC 5 cut(s) 39, 101, 778, 938, 1147
HpaII CCGG 3 cut(s) 378, 1190, 1219
HphI GGTGA 1 cut(s) 972
Hpy166II GTNNAC 3 cut(s) 177, 990, 1227
Hpy188I TCNGA 8 cut(s) 27, 52, 496, 550, 777, 898, 1126, 1238
Hpy188III TCNNGA 8 cut(s) 155, 445, 467, 563, 638, 935, 1151, 1219
Hpy8I GTNNAC 3 cut(s) 177, 990, 1227
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 5 cut(s) 22, 326, 427, 863, 1062
HpyCH4III ACNGT 3 cut(s) 22, 362, 865
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 9 cut(s) 96, 141, 233, 365, 606, 820, 959, 1139, 1199
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 371, 603
HpyF3I CTNAG 4 cut(s) 65, 504, 761, 1184
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 614
Hsp92II CATG 5 cut(s) 470, 566, 800, 820, 1119
Kpn2I TCCGGA 1 cut(s) 1218
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
LguI GCTCTTC 1 cut(s) 777
LmnI GCTCC 6 cut(s) 58, 79, 317, 386, 580, 757
Lsp1109I GCAGC 4 cut(s) 48, 518, 590, 1123
LweI GCATC 3 cut(s) 562, 659, 757
MaeI CTAG 1 cut(s) 917
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 68
MalI GATC 8 cut(s) 110, 255, 347, 498, 561, 588, 828, 852
MboI GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 6 cut(s) 203, 440, 643, 678, 800, 1097
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 75, 339
Mph1103I ATGCAT 1 cut(s) 1201
MroI TCCGGA 1 cut(s) 1218
MroXI GAANNNNTTC 2 cut(s) 206, 889
MseI TTAA 3 cut(s) 666, 752, 906
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 3 cut(s) 378, 1190, 1219
MspR9I CCNGG 1 cut(s) 378
MvnI CGCG 2 cut(s) 156, 283
MwoI GCNNNNNNNGC 3 cut(s) 12, 371, 603
NciI CCSGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 1201
NdeII GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
NlaIII CATG 5 cut(s) 470, 566, 800, 820, 1119
NlaIV GGNNCC 2 cut(s) 382, 410
NmuCI GTSAC 1 cut(s) 68
NruI TCGCGA 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 1201
NspI RCATGY 2 cut(s) 820, 1119
NspV TTCGAA 1 cut(s) 804
PaeI GCATGC 1 cut(s) 820
PagI TCATGA 2 cut(s) 466, 562
PciSI GCTCTTC 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 206, 889
PfeI GAWTC 4 cut(s) 39, 778, 938, 1147
PkrI GCNGC 7 cut(s) 8, 11, 14, 63, 533, 605, 1138
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 382, 410
PspPI GGNCC 2 cut(s) 358, 408
PspPPI RGGWCCY 1 cut(s) 408
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 603
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 456
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 4 cut(s) 269, 296, 542, 743
RsaNI GTAC 4 cut(s) 268, 295, 541, 742
RseI CAYNNNNRTG 1 cut(s) 1008
SapI GCTCTTC 1 cut(s) 777
SaqAI TTAA 3 cut(s) 666, 752, 906
SatI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
Sau3AI GATC 8 cut(s) 108, 253, 345, 496, 559, 586, 826, 850
Sau96I GGNCC 2 cut(s) 358, 408
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 3 cut(s) 562, 659, 757
SfcI CTRYAG 3 cut(s) 324, 604, 837
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 2 cut(s) 358, 408
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
SphI GCATGC 1 cut(s) 820
Sse9I AATT 6 cut(s) 203, 440, 643, 678, 800, 1097
SsiI CCGC 7 cut(s) 9, 12, 185, 281, 794, 953, 1113
SspI AATATT 1 cut(s) 1072
SspMI CTAG 1 cut(s) 917
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 3 cut(s) 22, 362, 865
TaiI ACGT 1 cut(s) 430
TaqI TCGA 4 cut(s) 132, 589, 653, 804
TasI AATT 6 cut(s) 203, 440, 643, 678, 800, 1097
TatI WGTACW 2 cut(s) 294, 540
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 4 cut(s) 39, 778, 938, 1147
Tru1I TTAA 3 cut(s) 666, 752, 906
Tru9I TTAA 3 cut(s) 666, 752, 906
TscAI CASTG 3 cut(s) 691, 868, 1170
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 5 cut(s) 6, 61, 531, 603, 1136
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 6 cut(s) 455, 714, 813, 882, 938, 1026
TspRI CASTG 3 cut(s) 691, 868, 1170
VpaK11BI GGWCC 2 cut(s) 358, 408
XapI RAATTY 3 cut(s) 203, 440, 800
XceI RCATGY 2 cut(s) 820, 1119
XcmI CCANNNNNNNNNTGG 1 cut(s) 1170
XmiI GTMKAC 2 cut(s) 989, 1226
XmnI GAANNNNTTC 2 cut(s) 206, 889
XspI CTAG 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.