Rw1G005390
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000639
Physical Location & Seq
Reverse (-)
10393269 .. 10395259
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005390.1

Sequence Viewer

Length: 1458 bp
ATGTGCTGCGGCGGCTTCACAGTTCCGAAGGGATACCGATTCCATCCCTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGCAGAAGAATAAGTGCAAGGACTCCCAGATCACTACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCACGCGAGTTGCCAGAACTGGCGTTCACAAGGGCGGAAAGTCTGGGCAGGAAATTTTTCTTTTTCTTCTTCTTTTGGTTTGCAAGGGAAGTGTCTTGGGACAATCAGGGAAAGTGGTACTTCTTCACTCCGCGTGATTACAAGTACAATAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTTTGGAAGATAACAGGGAAGGACCGTGCAATCAAGGCCCCCGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCCTGACATTCTACAAACGTGGAGTGCCGAAATCCCAGAAGACCAGCTGGGTTATTCATGAGTATTATCTCATTCAGGCACATTCTGATCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGCTGCTTGAAGTACAAGTCAGATAACTTTGATCATGATAAGGATGCTCCATTCTGCGATCGAGGTAGCAGTAGCTGCAGTGTGGCCTCCAATGTTGTAAATCAAGCTCAAGAAAATTCGGCATCGAAAGAGCTGGCTAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAGTACCTGACTTTAAAGGAGCTGAGAGATGCTCTTCAGATTCCCATTGGCAATCCGCATGAATTCGAAGTCCAAGGCACGCAAACTGATCCTTGTCCTATAGATAAGAATGATCTTTCAACCACTGTTGAAGGCCAACCTGATAGAAGCAATTCATCTGATATGATTAAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTCATCAGCCTACACCACCTCAACTACATAACTCACCAATGTATACCACCAATGTCCATAATGATGAATGTCGTAAGAGGACATGCCCATTTGAGGATAATAACCCTTCTCTTACGAAGAAGAATATTATTTCAACAAATGATGATGACGAATTAGTTAGCAACACCGCATGTAGTTCTGAAAATCAAGCTGCAAATATGCTTCCAGAGGGATATTCTCAACTAGGAGCAAATCTGGGATCAGAATTTGATTCATTTCTGCCAAACGATTACGATTATACATTACCATCAATAAACGGAGGACTGAGAGATTTTTCCCATGACAATAATTTCATTGAGTTGGATGATTTACCATCTTCATACGAAGGTATTGACTCTTCTCTCGCACAGTTCCTACATACAGTTATTGATGGAGGTAGAGGAGTAACCAGTGACAGAAACACCGAAGTAGTACATGGATCGGTAAACGATTATTCTGCATTAGCCATTGGAGCAACGCTCCAGCATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

485

Amino Acids

54.48

Weight (kDa)

4.89

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 159 1.4e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 989
AccII CGCG 2 cut(s) 156, 283
AciI CCGC 6 cut(s) 9, 12, 185, 281, 794, 1113
AclWI GGATC 4 cut(s) 491, 821, 1192, 1411
AcsI RAATTY 4 cut(s) 203, 643, 800, 1190
AcuI CTGAAG 1 cut(s) 758
AfaI GTAC 5 cut(s) 269, 296, 542, 743, 1398
AfiI CCNNNNNNNGG 1 cut(s) 1039
AgsI TTSAA 4 cut(s) 538, 858, 869, 1080
AlwI GGATC 4 cut(s) 491, 821, 1192, 1411
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 3 cut(s) 372, 612, 871
ApeKI GCWGC 5 cut(s) 6, 61, 531, 603, 1136
ApoI RAATTY 4 cut(s) 203, 643, 800, 1190
Asp700I GAANNNNTTC 2 cut(s) 206, 889
AspS9I GGNCC 3 cut(s) 358, 373, 408
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 972
AsuII TTCGAA 1 cut(s) 804
AvaII GGWCC 2 cut(s) 358, 408
BarI GAAGNNNNNNTAC 2 cut(s) 1306, 1338
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 4 cut(s) 48, 518, 590, 1123
BccI CCATC 5 cut(s) 51, 125, 1240, 1306, 1349
BcgI CGANNNNNNTGC 2 cut(s) 1403, 1437
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 2 cut(s) 917, 1169
BfmI CTRYAG 3 cut(s) 324, 604, 837
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
BlsI GCNGC 7 cut(s) 8, 11, 14, 63, 533, 605, 1138
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 2 cut(s) 358, 408
BmgT120I GGNCC 3 cut(s) 358, 373, 408
BmiI GGNNCC 3 cut(s) 375, 382, 410
BmrFI CCNGG 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 3 cut(s) 562, 659, 757
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 3 cut(s) 754, 786, 1428
BpmI CTGGAG 1 cut(s) 1430
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 376, 811
Bsc4I CCNNNNNNNGG 1 cut(s) 1039
Bse1I ACTGG 4 cut(s) 174, 684, 715, 1374
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 376, 811
BseGI GGATG 4 cut(s) 43, 120, 577, 1294
BseLI CCNNNNNNNGG 1 cut(s) 1039
BseMII CTCAG 2 cut(s) 752, 1241
BseNI ACTGG 4 cut(s) 174, 684, 715, 1374
BseRI GAGGAG 3 cut(s) 71, 752, 1380
BseXI GCAGC 4 cut(s) 48, 518, 590, 1123
BseYI CCCAGC 1 cut(s) 456
Bsh1236I CGCG 2 cut(s) 156, 283
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 3 cut(s) 374, 614, 873
BshVI ATCGAT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 263, 530
BslI CCNNNNNNNGG 1 cut(s) 1039
BsmFI GGGAC 2 cut(s) 263, 530
BsnI GGCC 3 cut(s) 374, 614, 873
Bsp119I TTCGAA 1 cut(s) 804
Bsp143I GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
BspACI CCGC 6 cut(s) 9, 12, 185, 281, 794, 1113
BspANI GGCC 3 cut(s) 374, 614, 873
BspCNI CTCAG 2 cut(s) 753, 1242
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 2 cut(s) 156, 283
BspHI TCATGA 2 cut(s) 466, 562
BspLI GGNNCC 3 cut(s) 375, 382, 410
BspMAI CTGCAG 1 cut(s) 608
BspPI GGATC 4 cut(s) 491, 821, 1192, 1411
BspQI GCTCTTC 1 cut(s) 777
BspT104I TTCGAA 1 cut(s) 804
BsrI ACTGG 4 cut(s) 174, 684, 715, 1374
BssECI CCNNGG 2 cut(s) 376, 811
BssMI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
BssNAI GTATAC 1 cut(s) 990
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 811
Bst1107I GTATAC 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 146
Bst4CI ACNGT 5 cut(s) 22, 362, 865, 1335, 1348
Bst6I CTCTTC 3 cut(s) 729, 777, 1327
BstAPI GCANNNNNTGC 1 cut(s) 603
BstBI TTCGAA 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 143, 663, 818
BstDEI CTNAG 4 cut(s) 65, 504, 761, 1250
BstF5I GGATG 4 cut(s) 43, 120, 577, 1294
BstFNI CGCG 2 cut(s) 156, 283
BstKTI GATC 8 cut(s) 111, 499, 562, 589, 829, 853, 1187, 1406
BstMBI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1436
BstNSI RCATGY 2 cut(s) 1032, 1119
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 3 cut(s) 324, 604, 837
BstUI CGCG 2 cut(s) 156, 283
BstV1I GCAGC 4 cut(s) 48, 518, 590, 1123
BstV2I GAAGAC 1 cut(s) 455
BstZ17I GTATAC 1 cut(s) 990
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 374, 614, 873
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 4 cut(s) 43, 120, 577, 1294
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 4 cut(s) 613, 691, 861, 1381
Cac8I GCNNGC 3 cut(s) 143, 663, 818
CaiI CAGNNNCTG 1 cut(s) 603
CciI TCATGA 2 cut(s) 466, 562
Cfr13I GGNCC 3 cut(s) 358, 373, 408
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 5 cut(s) 268, 295, 541, 742, 1397
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 7 cut(s) 467, 563, 797, 1029, 1116, 1265, 1400
CviQI GTAC 5 cut(s) 268, 295, 541, 742, 1397
DdeI CTNAG 4 cut(s) 65, 504, 761, 1250
DpnI GATC 8 cut(s) 110, 498, 561, 588, 828, 852, 1186, 1405
DpnII GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
DraI TTTAAA 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 3 cut(s) 729, 777, 1327
EarI CTCTTC 3 cut(s) 729, 777, 1327
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 811
Eco47I GGWCC 2 cut(s) 358, 408
Eco57I CTGAAG 1 cut(s) 758
EcoO109I RGGNCCY 2 cut(s) 373, 408
EcoRI GAATTC 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 7 cut(s) 470, 566, 800, 1032, 1119, 1268, 1403
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 263, 530
FatI CATG 7 cut(s) 466, 562, 796, 1028, 1115, 1264, 1399
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 989
Fnu4HI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
FokI GGATG 4 cut(s) 30, 107, 584, 1301
Fsp4HI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
FspBI CTAG 2 cut(s) 917, 1169
GluI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 1430
HaeIII GGCC 3 cut(s) 374, 614, 873
HapII CCGG 1 cut(s) 378
Hin1II CATG 7 cut(s) 470, 566, 800, 1032, 1119, 1268, 1403
HinfI GANTC 6 cut(s) 39, 101, 778, 938, 1196, 1319
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 972
Hpy166II GTNNAC 3 cut(s) 177, 990, 1411
Hpy188I TCNGA 8 cut(s) 27, 52, 496, 550, 777, 898, 1126, 1189
Hpy188III TCNNGA 5 cut(s) 467, 563, 638, 935, 1151
Hpy8I GTNNAC 3 cut(s) 177, 990, 1411
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 6 cut(s) 22, 326, 349, 863, 1062, 1304
HpyCH4III ACNGT 5 cut(s) 22, 362, 865, 1335, 1348
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 7 cut(s) 96, 141, 233, 365, 606, 1139, 1424
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1436
HpyF3I CTNAG 4 cut(s) 65, 504, 761, 1250
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 7 cut(s) 470, 566, 800, 1032, 1119, 1268, 1403
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
LguI GCTCTTC 1 cut(s) 777
LmnI GCTCC 9 cut(s) 58, 79, 317, 386, 580, 757, 1172, 1436, 1449
Lsp1109I GCAGC 4 cut(s) 48, 518, 590, 1123
LweI GCATC 3 cut(s) 562, 659, 757
MaeI CTAG 2 cut(s) 917, 1169
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 3 cut(s) 68, 1369, 1376
MalI GATC 8 cut(s) 110, 498, 561, 588, 828, 852, 1186, 1405
MboI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
MluCI AATT 8 cut(s) 203, 643, 678, 800, 889, 1097, 1190, 1273
MlyI GAGTC 2 cut(s) 95, 1313
MmeI TCCRAC 3 cut(s) 75, 339, 1266
MroXI GAANNNNTTC 2 cut(s) 206, 889
MseI TTAA 2 cut(s) 752, 906
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 378
MvnI CGCG 2 cut(s) 156, 283
MwoI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1436
NciI CCSGG 1 cut(s) 378
NdeII GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
NlaIII CATG 7 cut(s) 470, 566, 800, 1032, 1119, 1268, 1403
NlaIV GGNNCC 3 cut(s) 375, 382, 410
NmuCI GTSAC 2 cut(s) 68, 1376
NspI RCATGY 2 cut(s) 1032, 1119
NspV TTCGAA 1 cut(s) 804
PagI TCATGA 2 cut(s) 466, 562
PciSI GCTCTTC 1 cut(s) 777
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 206, 889
PfeI GAWTC 4 cut(s) 39, 778, 938, 1196
PkrI GCNGC 7 cut(s) 8, 11, 14, 63, 533, 605, 1138
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 2 cut(s) 95, 1313
PpsI GAGTC 2 cut(s) 95, 1313
PpuMI RGGWCCY 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 375, 382, 410
PspPI GGNCC 3 cut(s) 358, 373, 408
PspPPI RGGWCCY 1 cut(s) 408
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 603
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 5 cut(s) 269, 296, 542, 743, 1398
RsaNI GTAC 5 cut(s) 268, 295, 541, 742, 1397
RseI CAYNNNNRTG 1 cut(s) 1008
SapI GCTCTTC 1 cut(s) 777
SaqAI TTAA 2 cut(s) 752, 906
SatI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1137
Sau3AI GATC 8 cut(s) 108, 496, 559, 586, 826, 850, 1184, 1403
Sau96I GGNCC 3 cut(s) 358, 373, 408
SchI GAGTC 2 cut(s) 95, 1313
ScrFI CCNGG 1 cut(s) 378
SfaNI GCATC 3 cut(s) 562, 659, 757
SfcI CTRYAG 3 cut(s) 324, 604, 837
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 2 cut(s) 358, 408
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 1 cut(s) 636
SmoI CTYRAG 1 cut(s) 636
Sse9I AATT 8 cut(s) 203, 643, 678, 800, 889, 1097, 1190, 1273
SsiI CCGC 6 cut(s) 9, 12, 185, 281, 794, 1113
SspI AATATT 1 cut(s) 1072
SspMI CTAG 2 cut(s) 917, 1169
StyD4I CCNGG 1 cut(s) 376
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 5 cut(s) 22, 362, 865, 1335, 1348
TaiI ACGT 1 cut(s) 430
TaqI TCGA 4 cut(s) 132, 589, 653, 804
TasI AATT 8 cut(s) 203, 643, 678, 800, 889, 1097, 1190, 1273
TatI WGTACW 3 cut(s) 294, 540, 1396
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 4 cut(s) 39, 778, 938, 1196
Tru1I TTAA 2 cut(s) 752, 906
Tru9I TTAA 2 cut(s) 752, 906
TscAI CASTG 4 cut(s) 613, 691, 868, 1381
TseFI GTSAC 2 cut(s) 68, 1376
TseI GCWGC 5 cut(s) 6, 61, 531, 603, 1136
Tsp45I GTSAC 2 cut(s) 68, 1376
TspDTI ATGAA 9 cut(s) 455, 714, 813, 882, 938, 1026, 1188, 1267, 1293
TspGWI ACGGA 1 cut(s) 1257
TspRI CASTG 4 cut(s) 613, 691, 868, 1381
VpaK11BI GGWCC 2 cut(s) 358, 408
XapI RAATTY 4 cut(s) 203, 643, 800, 1190
XceI RCATGY 2 cut(s) 1032, 1119
XmiI GTMKAC 1 cut(s) 989
XmnI GAANNNNTTC 2 cut(s) 206, 889
XspI CTAG 2 cut(s) 917, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.