Rmu_sc0006417.1_g000001
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006417.1
OG0000639
Physical Location & Seq
Forward (+)
5329 .. 10111
4783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006417.1_g000001.1.cds

Sequence Viewer

Length: 1212 bp
atgttaactgacactttcttgtttttgatcaaacagctactaaatgatccagaaaatatggattcgttgtttcatctacccgcggcacctctactgcatcagctacatcagtcaccaatttataccaccaatgtccataatgatgaatgccgtaagaggaaatatccatttgaggataatcactcttctcatacgaagaagaacaatatttcaaccattgatggtggtgaactagttagcaacaccacatctaattctgaaaatcaagctgcagatgtgattgcagagggatattctcaaccaggagcaaatctgggatctgattttgattcatattcgaagaaggctcagggtgactttgttatttgtcgcgggtgtgtgatgaagaataaatcagataagaaggattctttggtcagtgatgaaggggaaccggatagtgcggatgtgtctaattggaaaattcaagcggcacaccaaaatgatgaaccacttcttcatcaacctcagcctctggatgacagctgctcctctgcagtgcggtcatcggcatccctagagctggaagctgttctgcaagccaatggcactaatgatgattgttacaagtcgcaatcaccatttggagatattaattcttgtctagaagacaagaatgaagtttcaacctgtgatgaaaatgagagtatggatggtgtgtttgcacagctatgtgacccaccggaagtaaatctagattcactcttttgttcacttcagccacaagatgaccgcctctccataccgcagtcaccaatatacacaaagctgggaaatgttccagatgccaatctctattttggtgaatgcaataattggcaatctgcatttaagaaaaacatttcaaccaatgaagttgacataccaattagacatatcatgtctaattttgaaaatcaagctacagattgtaggattccagaggtgagaatgcagactagcaggcaaggtgacgatggcaataagggaggggctcttgaattagggttctggccattgtggcttgacagggtgaccggaagtgtttgcacgtcgatttctgcaaaggccatggttataacagggattgaggatccgcgatactggaagaattggggtaagagtagaatgatatgcgtgggtcactggtgtgcgattttgcaactaaattgtgtagaactaaagcacatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

403

Amino Acids

44.83

Weight (kDa)

4.75

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AccB1I GGYRCC 1 cut(s) 85
AccII CGCG 3 cut(s) 83, 372, 1117
AciI CCGC 9 cut(s) 81, 83, 372, 443, 470, 541, 772, 785, 1115
AclWI GGATC 4 cut(s) 41, 325, 1106, 1119
AcoI YGGCCR 1 cut(s) 1031
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 740
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 6 cut(s) 213, 467, 666, 885, 932, 1019
AhlI ACTAGT 1 cut(s) 232
AjiI CACGTC 1 cut(s) 1071
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 1 cut(s) 1167
AluBI AGCT 9 cut(s) 37, 103, 269, 525, 562, 569, 709, 808, 941
AluI AGCT 9 cut(s) 37, 103, 269, 525, 562, 569, 709, 808, 941
AlwI GGATC 4 cut(s) 41, 325, 1106, 1119
AlwNI CAGNNNCTG 1 cut(s) 514
AoxI GGCC 2 cut(s) 1031, 1086
ApeKI GCWGC 2 cut(s) 269, 525
ApoI RAATTY 1 cut(s) 462
AseI ATTAAT 1 cut(s) 633
Asp700I GAANNNNTTC 2 cut(s) 492, 570
AsuHPI GGTGA 9 cut(s) 105, 239, 365, 609, 783, 854, 976, 1001, 1063
AsuII TTCGAA 1 cut(s) 338
BalI TGGCCA 1 cut(s) 1033
BamHI GGATCC 1 cut(s) 1111
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 1015
BarI GAAGNNNNNNTAC 2 cut(s) 885, 917
BbsI GAAGAC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 256, 512
BccI CCATC 3 cut(s) 215, 686, 989
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 5 cut(s) 233, 557, 644, 734, 978
BfmI CTRYAG 3 cut(s) 270, 534, 942
BglI GCCNNNNNGGC 1 cut(s) 1039
BisI GCNGC 4 cut(s) 84, 270, 471, 526
BlsI GCNGC 4 cut(s) 85, 271, 472, 527
Bme1390I CCNGG 1 cut(s) 303
BmgBI CACGTC 1 cut(s) 1071
BmiI GGNNCC 3 cut(s) 87, 432, 1113
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 3 cut(s) 106, 560, 814
BpiI GAAGAC 1 cut(s) 654
Bpu10I CCTNAGC 2 cut(s) 348, 507
Bpu14I TTCGAA 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 81, 1089
BsaWI WCCGGW 3 cut(s) 433, 721, 1055
BsaXI ACNNNNNCTCC 4 cut(s) 512, 542, 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 2 cut(s) 1127, 1169
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 81, 1089
BseGI GGATG 4 cut(s) 451, 523, 551, 697
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 362, 521
BseNI ACTGG 2 cut(s) 1127, 1169
BseRI GAGGAG 1 cut(s) 520
BseXI GCAGC 2 cut(s) 256, 512
BseYI CCCAGC 1 cut(s) 808
Bsh1236I CGCG 3 cut(s) 83, 372, 1117
BshFI GGCC 2 cut(s) 1033, 1088
BshNI GGYRCC 1 cut(s) 85
BsiSI CCGG 3 cut(s) 434, 722, 1056
BslI CCNNNNNNNGG 1 cut(s) 562
BsmI GAATGC 3 cut(s) 152, 851, 975
BsnI GGCC 2 cut(s) 1033, 1088
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 1015
Bsp143I GATC 4 cut(s) 27, 46, 317, 1111
Bsp19I CCATGG 1 cut(s) 1089
BspACI CCGC 9 cut(s) 81, 83, 372, 443, 470, 541, 772, 785, 1115
BspANI GGCC 2 cut(s) 1033, 1088
BspCNI CTCAG 2 cut(s) 361, 520
BspFNI CGCG 3 cut(s) 83, 372, 1117
BspLI GGNNCC 3 cut(s) 87, 432, 1113
BspMAI CTGCAG 2 cut(s) 274, 538
BspPI GGATC 4 cut(s) 41, 325, 1106, 1119
BspT104I TTCGAA 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 85
BsrI ACTGG 2 cut(s) 1127, 1169
BssECI CCNNGG 2 cut(s) 81, 1089
BssMI GATC 4 cut(s) 27, 46, 317, 1111
BssT1I CCWWGG 1 cut(s) 1089
Bst2UI CCWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 579, 983
BstDEI CTNAG 2 cut(s) 348, 507
BstDSI CCRYGG 2 cut(s) 81, 1089
BstEII GGTNACC 1 cut(s) 1051
BstF5I GGATG 4 cut(s) 451, 523, 551, 697
BstFNI CGCG 3 cut(s) 83, 372, 1117
BstKTI GATC 4 cut(s) 30, 49, 320, 1114
BstMBI GATC 4 cut(s) 27, 46, 317, 1111
BstMWI GCNNNNNNNGC 1 cut(s) 1039
BstNI CCWGG 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 3 cut(s) 270, 534, 942
BstUI CGCG 3 cut(s) 83, 372, 1117
BstV1I GCAGC 2 cut(s) 256, 512
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 2 cut(s) 317, 1111
BstYI RGATCY 2 cut(s) 317, 1111
BsuRI GGCC 2 cut(s) 1033, 1088
BtgI CCRYGG 2 cut(s) 81, 1089
BtrI CACGTC 1 cut(s) 1071
BtsCI GGATG 4 cut(s) 451, 523, 551, 697
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 424, 543, 1162
Cac8I GCNNGC 2 cut(s) 579, 983
CaiI CAGNNNCTG 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 84
CviAII CATG 2 cut(s) 919, 1090
DdeI CTNAG 2 cut(s) 348, 507
DpnI GATC 4 cut(s) 29, 48, 319, 1113
DpnII GATC 4 cut(s) 27, 46, 317, 1111
EaeI YGGCCR 1 cut(s) 1031
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 1089
Eco24I GRGCYC 1 cut(s) 1015
Eco57I CTGAAG 1 cut(s) 740
Eco91I GGTNACC 1 cut(s) 1051
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 1089
EcoT38I GRGCYC 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 1089
FaeI CATG 2 cut(s) 922, 1093
FatI CATG 2 cut(s) 918, 1089
FauI CCCGC 2 cut(s) 88, 365
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 84, 270, 471, 526
FokI GGATG 4 cut(s) 458, 530, 538, 704
FriOI GRGCYC 1 cut(s) 1015
Fsp4HI GCNGC 4 cut(s) 84, 270, 471, 526
FspBI CTAG 5 cut(s) 233, 557, 644, 734, 978
GluI GCNGC 4 cut(s) 84, 270, 471, 526
GsaI CCCAGC 1 cut(s) 812
HaeIII GGCC 2 cut(s) 1033, 1088
HapII CCGG 3 cut(s) 434, 722, 1056
Hin1II CATG 2 cut(s) 922, 1093
HincII GTYRAC 2 cut(s) 6, 898
HindII GTYRAC 2 cut(s) 6, 898
HinfI GANTC 5 cut(s) 62, 329, 407, 737, 955
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 3 cut(s) 434, 722, 1056
HphI GGTGA 9 cut(s) 105, 239, 365, 609, 783, 854, 976, 1001, 1063
Hpy166II GTNNAC 4 cut(s) 6, 230, 752, 898
Hpy188I TCNGA 3 cut(s) 259, 322, 397
Hpy188III TCNNGA 7 cut(s) 50, 515, 644, 734, 821, 959, 1016
Hpy8I GTNNAC 4 cut(s) 6, 230, 752, 898
Hpy99I CGWCG 1 cut(s) 1075
HpyAV CCTTC 3 cut(s) 337, 397, 419
HpyCH4IV ACGT 1 cut(s) 1070
HpyF10VI GCNNNNNNNGC 1 cut(s) 1039
HpyF3I CTNAG 2 cut(s) 348, 507
HpySE526I ACGT 1 cut(s) 1070
Hsp92II CATG 2 cut(s) 922, 1093
Ksp22I TGATCA 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 6
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 4 cut(s) 27, 46, 317, 1111
LmnI GCTCC 2 cut(s) 305, 533
Lsp1109I GCAGC 2 cut(s) 256, 512
LweI GCATC 3 cut(s) 106, 560, 814
MaeI CTAG 5 cut(s) 233, 557, 644, 734, 978
MaeII ACGT 1 cut(s) 1070
MaeIII GTNAC 8 cut(s) 111, 353, 602, 713, 789, 989, 1051, 1160
MalI GATC 4 cut(s) 29, 48, 319, 1113
MboI GATC 4 cut(s) 27, 46, 317, 1111
MboII GAAGA 8 cut(s) 177, 208, 211, 352, 397, 488, 659, 1138
MflI RGATCY 2 cut(s) 317, 1111
MhlI GDGCHC 1 cut(s) 1015
MlsI TGGCCA 1 cut(s) 1033
MluNI TGGCCA 1 cut(s) 1033
Mox20I TGGCCA 1 cut(s) 1033
MroXI GAANNNNTTC 2 cut(s) 492, 570
MscI TGGCCA 1 cut(s) 1033
MseI TTAA 3 cut(s) 5, 633, 870
MslI CAYNNNNRTG 4 cut(s) 141, 480, 709, 1167
Msp20I TGGCCA 1 cut(s) 1033
MspA1I CMGCKG 2 cut(s) 83, 525
MspI CCGG 3 cut(s) 434, 722, 1056
MspR9I CCNGG 1 cut(s) 303
Mva1269I GAATGC 3 cut(s) 152, 851, 975
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 3 cut(s) 83, 372, 1117
MwoI GCNNNNNNNGC 1 cut(s) 1039
NcoI CCATGG 1 cut(s) 1089
NdeII GATC 4 cut(s) 27, 46, 317, 1111
NlaIII CATG 2 cut(s) 922, 1093
NlaIV GGNNCC 3 cut(s) 87, 432, 1113
NmuCI GTSAC 7 cut(s) 111, 353, 713, 789, 989, 1051, 1160
NspV TTCGAA 1 cut(s) 338
OliI CACNNNNGTG 1 cut(s) 1167
PctI GAATGC 3 cut(s) 152, 851, 975
PdmI GAANNNNTTC 2 cut(s) 492, 570
PfeI GAWTC 5 cut(s) 62, 329, 407, 737, 955
PkrI GCNGC 4 cut(s) 85, 271, 472, 527
PshBI ATTAAT 1 cut(s) 633
PsiI TTATAA 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 808
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 3 cut(s) 87, 432, 1113
PstI CTGCAG 2 cut(s) 274, 538
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 317, 1111
PvuII CAGCTG 1 cut(s) 525
RseI CAYNNNNRTG 4 cut(s) 141, 480, 709, 1167
SacII CCGCGG 1 cut(s) 84
SaqAI TTAA 3 cut(s) 5, 633, 870
SatI GCNGC 4 cut(s) 84, 270, 471, 526
Sau3AI GATC 4 cut(s) 27, 46, 317, 1111
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 1 cut(s) 1015
SfaNI GCATC 3 cut(s) 106, 560, 814
SfcI CTRYAG 3 cut(s) 270, 534, 942
Sfr303I CCGCGG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 338
SgrBI CCGCGG 1 cut(s) 84
SmiMI CAYNNNNRTG 4 cut(s) 141, 480, 709, 1167
SpeI ACTAGT 1 cut(s) 232
SsiI CCGC 9 cut(s) 81, 83, 372, 443, 470, 541, 772, 785, 1115
SspI AATATT 1 cut(s) 208
SspMI CTAG 5 cut(s) 233, 557, 644, 734, 978
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 1089
TaiI ACGT 1 cut(s) 1073
TaqI TCGA 2 cut(s) 338, 1073
TauI GCSGC 2 cut(s) 86, 473
TfiI GAWTC 5 cut(s) 62, 329, 407, 737, 955
Tru1I TTAA 3 cut(s) 5, 633, 870
Tru9I TTAA 3 cut(s) 5, 633, 870
TscAI CASTG 3 cut(s) 424, 543, 1169
TseFI GTSAC 7 cut(s) 111, 353, 713, 789, 989, 1051, 1160
TseI GCWGC 2 cut(s) 269, 525
Tsp45I GTSAC 7 cut(s) 111, 353, 713, 789, 989, 1051, 1160
TspRI CASTG 3 cut(s) 424, 543, 1169
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 1 cut(s) 462
XbaI TCTAGA 2 cut(s) 643, 733
XmnI GAANNNNTTC 2 cut(s) 492, 570
XspI CTAG 5 cut(s) 233, 557, 644, 734, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.