Rmu_sc0017253.1_g000004
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017253.1
OG0000639
Physical Location & Seq
Reverse (-)
21389 .. 22368
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017253.1_g000004.1.cds

Sequence Viewer

Length: 849 bp
atgagctgcggcgacttcacagttccaaagggataccaattccatccctccgacgaggagctgcttagtcactacttggaggagaagaatcagtgcaaggactcccagatcactaccatcatccctgaaatcgatgtgtgcaagcacgagcctcacgagttaccaggaaatttttttttttttttcttcttttggtttgcaagggaagtgtcttgggacagtcaaggaaagtggtacttcttcactccgcgtgattacaagtacaataacagcactcgctccaacacgactacaggggaagggttttggaagatcacaggcaaggaccgtgcaatcaaggcccccggctccaaagctgtgattgggagaaagaggaccctgacattctacaaacgtggagtgccgaaatcccagaagaccagctgggttattcatgagtattatctcattcaggcacattctgatcctcctaagcagataggggactttgttgtttgctgcttgaagtacaagtcagacaactctgattatgataaggatgccccattctgcgatcaaggtagcagtagctgcagtatggcctccaatgttgaaaatcaagctgaagaaaacagggcatcggaagagctggtaaatgttgttccaattcccagtggaaatgatgatgaaactggtgctggtatgattacagaagaagaggaatacctgactttagaggaggtggaagatattcttcagattcccattggcaatccgcatgaattggaaggcacgcaaactgatccttgtcatttagataagaatgatctctcaagctctgttgaaggccaagcagatagaagcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

282

Amino Acids

32.09

Weight (kDa)

4.79

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 250
AciI CCGC 3 cut(s) 9, 248, 755
AclWI GGATC 2 cut(s) 458, 776
AcsI RAATTY 1 cut(s) 169
AcuI CTGAAG 2 cut(s) 624, 719
AfaI GTAC 3 cut(s) 236, 263, 509
AgsI TTSAA 3 cut(s) 505, 593, 824
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 8 cut(s) 6, 61, 356, 423, 570, 602, 628, 816
AluI AGCT 8 cut(s) 6, 61, 356, 423, 570, 602, 628, 816
AlwI GGATC 2 cut(s) 458, 776
AlwNI CAGNNNCTG 1 cut(s) 570
AoxI GGCC 3 cut(s) 339, 579, 826
ApeKI GCWGC 4 cut(s) 6, 61, 498, 570
ApoI RAATTY 1 cut(s) 169
Asp700I GAANNNNTTC 1 cut(s) 729
AspS9I GGNCC 3 cut(s) 325, 340, 375
AsuC2I CCSGG 1 cut(s) 345
AvaII GGWCC 2 cut(s) 325, 375
BauI CACGAG 2 cut(s) 146, 155
BbsI GAAGAC 1 cut(s) 422
BbvI GCAGC 3 cut(s) 48, 485, 557
BccI CCATC 2 cut(s) 51, 125
BciT130I CCWGG 1 cut(s) 165
BciVI GTATCC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 345
BfmI CTRYAG 2 cut(s) 291, 571
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 5 cut(s) 7, 10, 62, 499, 571
BlsI GCNGC 5 cut(s) 8, 11, 63, 500, 572
Bme1390I CCNGG 2 cut(s) 165, 345
Bme18I GGWCC 2 cut(s) 325, 375
BmgT120I GGNCC 3 cut(s) 325, 340, 375
BmiI GGNNCC 3 cut(s) 342, 349, 377
BmrFI CCNGG 2 cut(s) 165, 345
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 529, 626
BmuI ACTGGG 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 651, 676
BseBI CCWGG 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 3 cut(s) 43, 120, 544
BseNI ACTGG 2 cut(s) 651, 676
BseRI GAGGAG 3 cut(s) 71, 95, 731
BseXI GCAGC 3 cut(s) 48, 485, 557
BseYI CCCAGC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 3 cut(s) 341, 581, 828
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 230, 497
BsmFI GGGAC 2 cut(s) 230, 497
BsnI GGCC 3 cut(s) 341, 581, 828
Bsp143I GATC 6 cut(s) 108, 312, 463, 553, 781, 805
BspACI CCGC 3 cut(s) 9, 248, 755
BspANI GGCC 3 cut(s) 341, 581, 828
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 1 cut(s) 250
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 342, 349, 377
BspMAI CTGCAG 1 cut(s) 575
BspPI GGATC 2 cut(s) 458, 776
BspQI GCTCTTC 1 cut(s) 618
BsrI ACTGG 2 cut(s) 651, 676
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 6 cut(s) 108, 312, 463, 553, 781, 805
BssSI CACGAG 2 cut(s) 146, 155
Bst2BI CACGAG 2 cut(s) 146, 155
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 22, 221, 329
Bst6I CTCTTC 2 cut(s) 618, 690
BstAPI GCANNNNNTGC 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 143, 773
BstDEI CTNAG 2 cut(s) 65, 471
BstF5I GGATG 3 cut(s) 43, 120, 544
BstFNI CGCG 1 cut(s) 250
BstKTI GATC 6 cut(s) 111, 315, 466, 556, 784, 808
BstMBI GATC 6 cut(s) 108, 312, 463, 553, 781, 805
BstMWI GCNNNNNNNGC 2 cut(s) 338, 570
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 2 cut(s) 163, 343
BstSFI CTRYAG 2 cut(s) 291, 571
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 3 cut(s) 48, 485, 557
BstV2I GAAGAC 1 cut(s) 422
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 341, 581, 828
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 3 cut(s) 43, 120, 544
BtsIMutI CAGTG 2 cut(s) 98, 658
Cac8I GCNNGC 2 cut(s) 143, 773
CaiI CAGNNNCTG 1 cut(s) 570
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 3 cut(s) 325, 340, 375
ClaI ATCGAT 1 cut(s) 132
Csp6I GTAC 3 cut(s) 235, 262, 508
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 2 cut(s) 434, 758
CviQI GTAC 3 cut(s) 235, 262, 508
DdeI CTNAG 2 cut(s) 65, 471
DpnI GATC 6 cut(s) 110, 314, 465, 555, 783, 807
DpnII GATC 6 cut(s) 108, 312, 463, 553, 781, 805
Eam1104I CTCTTC 2 cut(s) 618, 690
EarI CTCTTC 2 cut(s) 618, 690
Eco47I GGWCC 2 cut(s) 325, 375
Eco57I CTGAAG 2 cut(s) 624, 719
EcoO109I RGGNCCY 2 cut(s) 340, 375
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 437, 761
FaiI YATR 5 cut(s) 435, 531, 578, 683, 759
FalI AAGNNNNNCTT 4 cut(s) 221, 253, 717, 749
FaqI GGGAC 2 cut(s) 230, 497
FatI CATG 2 cut(s) 433, 757
Fnu4HI GCNGC 5 cut(s) 7, 10, 62, 499, 571
FokI GGATG 3 cut(s) 30, 107, 551
Fsp4HI GCNGC 5 cut(s) 7, 10, 62, 499, 571
GluI GCNGC 5 cut(s) 7, 10, 62, 499, 571
GsaI CCCAGC 1 cut(s) 427
HaeIII GGCC 3 cut(s) 341, 581, 828
HapII CCGG 1 cut(s) 345
Hin1II CATG 2 cut(s) 437, 761
HinfI GANTC 3 cut(s) 88, 101, 739
HpaII CCGG 1 cut(s) 345
Hpy188I TCNGA 6 cut(s) 52, 463, 517, 526, 622, 738
Hpy188III TCNNGA 2 cut(s) 155, 434
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 293, 761, 818
HpyCH4III ACNGT 3 cut(s) 22, 221, 329
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 5 cut(s) 96, 141, 200, 332, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 570
HpyF3I CTNAG 2 cut(s) 65, 471
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 2 cut(s) 437, 761
Kzo9I GATC 6 cut(s) 108, 312, 463, 553, 781, 805
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 3 cut(s) 58, 284, 353
Lsp1109I GCAGC 3 cut(s) 48, 485, 557
LweI GCATC 2 cut(s) 529, 626
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 2 cut(s) 68, 159
MalI GATC 6 cut(s) 110, 314, 465, 555, 783, 807
MboI GATC 6 cut(s) 108, 312, 463, 553, 781, 805
MluCI AATT 5 cut(s) 38, 169, 645, 761, 844
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 75, 306
MroXI GAANNNNTTC 1 cut(s) 729
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 2 cut(s) 165, 345
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 338, 570
NciI CCSGG 1 cut(s) 345
NdeII GATC 6 cut(s) 108, 312, 463, 553, 781, 805
NlaIII CATG 2 cut(s) 437, 761
NlaIV GGNNCC 3 cut(s) 342, 349, 377
NmuCI GTSAC 1 cut(s) 68
PagI TCATGA 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 729
PfeI GAWTC 2 cut(s) 88, 739
PkrI GCNGC 5 cut(s) 8, 11, 63, 500, 572
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 342, 349, 377
PspPI GGNCC 3 cut(s) 325, 340, 375
PspPPI RGGWCCY 1 cut(s) 375
PsrI GAACNNNNNNTAC 2 cut(s) 624, 656
PstI CTGCAG 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 570
PvuII CAGCTG 1 cut(s) 423
RsaI GTAC 3 cut(s) 236, 263, 509
RsaNI GTAC 3 cut(s) 235, 262, 508
SapI GCTCTTC 1 cut(s) 618
SatI GCNGC 5 cut(s) 7, 10, 62, 499, 571
Sau3AI GATC 6 cut(s) 108, 312, 463, 553, 781, 805
Sau96I GGNCC 3 cut(s) 325, 340, 375
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 165, 345
SfaNI GCATC 2 cut(s) 529, 626
SfcI CTRYAG 2 cut(s) 291, 571
SinI GGWCC 2 cut(s) 325, 375
SmlI CTYRAG 1 cut(s) 811
SmoI CTYRAG 1 cut(s) 811
Sse9I AATT 5 cut(s) 38, 169, 645, 761, 844
SsiI CCGC 3 cut(s) 9, 248, 755
StyD4I CCNGG 2 cut(s) 163, 343
TaaI ACNGT 3 cut(s) 22, 221, 329
TaiI ACGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 132
TasI AATT 5 cut(s) 38, 169, 645, 761, 844
TatI WGTACW 2 cut(s) 261, 507
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 88, 739
TscAI CASTG 2 cut(s) 98, 658
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 4 cut(s) 6, 61, 498, 570
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 3 cut(s) 422, 681, 774
TspRI CASTG 2 cut(s) 98, 658
VpaK11BI GGWCC 2 cut(s) 325, 375
XapI RAATTY 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.