Rmu_sc0010981.1_g000006
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010981.1
OG0000639
Physical Location & Seq
Forward (+)
13074 .. 14841
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010981.1_g000006.1.cds

Sequence Viewer

Length: 1176 bp
atgagctgcggcgacttcatagttccgccgggataccgattccatcccaccgacgagaggctgcttcgtgacttggaggagaagaaccggtgcaaggactccgagactcccaccatcatccctgttatcgagatgtgcaagcacgagcctcacgagttaccagaactggcattcacaagggcgcaaaatctaggcaggaagtttttctcctttttcttcttctgctttgcatgggcagagtcttgggacagtcagggcaagtggtacttcttcgctccgcgtgattacaagtacgctaacagcactcgctccaacaggactacaggggaagggttctggaagcccacaggcaaggtccgcgacatcaaggccccgggctccaaagctgtgattggaagaaagaggatcttaaccttccaaaaacatggagagccgaaccctcagaagaccggctgggtcattcatgagtattatctcattgaggcacattctgatcgtcctaaacagatcggggactttgttgtctgttgcttgaagtataagtcaaacaaccctgatcatgacaaggatgctccattcttcgatcaaggtagcacttgctgcagtatggcctccaatgttgaaaatcaagctgaagaaaattggtcatccattgagccggttaatgtcgttccaattcccaatggaaatggtgatgaagctgaaactggtggtggtatgattacagaagaagaggaatacctggctttaaaggagctggaaaatgctcttcagagtcctattggcaatcctcatgaattccaaggcacgcaaactgatccttgtcatatagataagaatgatctttcgacctctgttgaaggccgacctgataagagcaatttgtctgatatgattgaagagctactagatgacccagaaaatctggattcactctttgatacgcctgcgccacctcaactgcatcagccaccaatgtataccaccaatgaccataatgatgaatgtcgtaagagggcatatccatttgaggacaatgagccttctcttgtgaagaagaagaatatttcaaccaatgacgatgacgaattagttagcaagaccgcatccagttcggaaaatcaagctgcaaatatcaatatgattcaagaggtgggaataaacattctcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

391

Amino Acids

44.41

Weight (kDa)

4.87

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
AccI GTMKAC 1 cut(s) 980
AccII CGCG 2 cut(s) 280, 360
AciI CCGC 5 cut(s) 9, 26, 278, 358, 1104
AclWI GGATC 2 cut(s) 413, 812
AcsI RAATTY 1 cut(s) 797
AcuI CTGAAG 2 cut(s) 654, 755
AfaI GTAC 2 cut(s) 266, 293
AfiI CCNNNNNNNGG 2 cut(s) 57, 94
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 535, 623, 860, 899, 1071, 1148
AjnI CCWGG 1 cut(s) 741
AluBI AGCT 7 cut(s) 6, 386, 632, 701, 757, 904, 1127
AluI AGCT 7 cut(s) 6, 386, 632, 701, 757, 904, 1127
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 413, 812
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 3 cut(s) 369, 609, 862
ApeKI GCWGC 4 cut(s) 6, 61, 600, 1127
ApoI RAATTY 1 cut(s) 797
AsiGI ACCGGT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 184, 952
AspS9I GGNCC 2 cut(s) 355, 370
AsuC2I CCSGG 3 cut(s) 30, 374, 375
AsuHPI GGTGA 1 cut(s) 704
AvaI CYCGRG 1 cut(s) 373
AvaII GGWCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 380
BauI CACGAG 2 cut(s) 143, 152
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 3 cut(s) 48, 587, 1114
BccI CCATC 2 cut(s) 51, 122
BcgI CGANNNNNNTGC 2 cut(s) 1095, 1129
BciT130I CCWGG 1 cut(s) 743
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 3 cut(s) 30, 374, 375
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 191, 908
BfmI CTRYAG 2 cut(s) 321, 601
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
BlsI GCNGC 5 cut(s) 8, 11, 63, 602, 1129
Bme1390I CCNGG 4 cut(s) 30, 374, 375, 743
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 355, 370
BmiI GGNNCC 2 cut(s) 372, 379
BmrFI CCNGG 4 cut(s) 30, 374, 375, 743
BmsI GCATC 3 cut(s) 559, 973, 1115
BpiI GAAGAC 1 cut(s) 452
BpuMI CCSGG 3 cut(s) 30, 374, 375
BsaJI CCNNGG 3 cut(s) 372, 373, 802
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 94
Bse118I RCCGGY 3 cut(s) 87, 449, 658
Bse1I ACTGG 3 cut(s) 171, 712, 1110
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 3 cut(s) 372, 373, 802
BseGI GGATG 5 cut(s) 43, 117, 574, 647, 1106
BseLI CCNNNNNNNGG 2 cut(s) 57, 94
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 3 cut(s) 171, 712, 1110
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 3 cut(s) 48, 587, 1114
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 280, 360
BshFI GGCC 3 cut(s) 371, 611, 864
BshTI ACCGGT 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 5 cut(s) 29, 88, 374, 450, 659
BslFI GGGAC 2 cut(s) 260, 527
BslI CCNNNNNNNGG 2 cut(s) 57, 94
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 260, 527
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 3 cut(s) 371, 611, 864
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
BspACI CCGC 5 cut(s) 9, 26, 278, 358, 1104
BspANI GGCC 3 cut(s) 371, 611, 864
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 2 cut(s) 280, 360
BspHI TCATGA 3 cut(s) 463, 559, 793
BspLI GGNNCC 2 cut(s) 372, 379
BspMAI CTGCAG 1 cut(s) 605
BspPI GGATC 2 cut(s) 413, 812
BspQI GCTCTTC 2 cut(s) 774, 894
BsrFI RCCGGY 3 cut(s) 87, 449, 658
BsrI ACTGG 3 cut(s) 171, 712, 1110
BssAI RCCGGY 3 cut(s) 87, 449, 658
BssECI CCNNGG 3 cut(s) 372, 373, 802
BssMI GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
BssNAI GTATAC 1 cut(s) 981
BssSI CACGAG 2 cut(s) 143, 152
BssT1I CCWWGG 1 cut(s) 802
Bst1107I GTATAC 1 cut(s) 981
Bst2BI CACGAG 2 cut(s) 143, 152
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 3 cut(s) 726, 774, 894
BstAPI GCANNNNNTGC 1 cut(s) 600
BstC8I GCNNGC 3 cut(s) 140, 809, 948
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 5 cut(s) 43, 117, 574, 647, 1106
BstFNI CGCG 2 cut(s) 280, 360
BstHHI GCGC 2 cut(s) 184, 952
BstKTI GATC 7 cut(s) 408, 496, 510, 559, 586, 820, 844
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
BstMWI GCNNNNNNNGC 2 cut(s) 357, 600
BstNI CCWGG 1 cut(s) 743
BstSCI CCNGG 4 cut(s) 28, 372, 373, 741
BstSFI CTRYAG 2 cut(s) 321, 601
BstUI CGCG 2 cut(s) 280, 360
BstV1I GCAGC 3 cut(s) 48, 587, 1114
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 405
BstXI CCANNNNNNTGG 1 cut(s) 425
BstYI RGATCY 1 cut(s) 405
BstZ17I GTATAC 1 cut(s) 981
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 371, 611, 864
BtsCI GGATG 5 cut(s) 43, 117, 574, 647, 1106
Cac8I GCNNGC 3 cut(s) 140, 809, 948
CciI TCATGA 3 cut(s) 463, 559, 793
CfoI GCGC 2 cut(s) 184, 952
Cfr10I RCCGGY 3 cut(s) 87, 449, 658
Cfr13I GGNCC 2 cut(s) 355, 370
Cfr9I CCCGGG 1 cut(s) 373
Csp6I GTAC 2 cut(s) 265, 292
CspAI ACCGGT 1 cut(s) 87
CviAII CATG 5 cut(s) 231, 425, 464, 560, 794
CviQI GTAC 2 cut(s) 265, 292
DdeI CTNAG 1 cut(s) 441
DpnI GATC 7 cut(s) 407, 495, 509, 558, 585, 819, 843
DpnII GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
DraI TTTAAA 1 cut(s) 750
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 3 cut(s) 726, 774, 894
EarI CTCTTC 3 cut(s) 726, 774, 894
EciI GGCGGA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 802
Eco24I GRGCYC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 654, 755
Eco88I CYCGRG 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 741
EcoT14I CCWWGG 1 cut(s) 802
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 802
FaeI CATG 5 cut(s) 234, 428, 467, 563, 797
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 392, 424
FaqI GGGAC 2 cut(s) 260, 527
FatI CATG 5 cut(s) 230, 424, 463, 559, 793
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 1 cut(s) 980
Fnu4HI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
FokI GGATG 5 cut(s) 30, 104, 581, 634, 1093
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
FspBI CTAG 2 cut(s) 191, 908
GlaI GCGC 2 cut(s) 183, 951
GluI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 3 cut(s) 371, 611, 864
HapII CCGG 5 cut(s) 29, 88, 374, 450, 659
HhaI GCGC 2 cut(s) 184, 952
Hin1II CATG 5 cut(s) 234, 428, 467, 563, 797
Hin6I GCGC 2 cut(s) 182, 950
HinP1I GCGC 2 cut(s) 182, 950
HinfI GANTC 7 cut(s) 39, 98, 106, 239, 775, 929, 1144
HpaII CCGG 5 cut(s) 29, 88, 374, 450, 659
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 1 cut(s) 981
Hpy188I TCNGA 6 cut(s) 103, 444, 493, 774, 889, 1117
Hpy188III TCNNGA 9 cut(s) 68, 130, 152, 337, 464, 560, 794, 926, 1148
Hpy8I GTNNAC 1 cut(s) 981
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 4 cut(s) 323, 424, 854, 1053
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 6 cut(s) 93, 138, 230, 603, 964, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 600
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 5 cut(s) 234, 428, 467, 563, 797
HspAI GCGC 2 cut(s) 182, 950
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
LguI GCTCTTC 2 cut(s) 774, 894
LmnI GCTCC 5 cut(s) 280, 314, 383, 577, 754
Lsp1109I GCAGC 3 cut(s) 48, 587, 1114
LweI GCATC 3 cut(s) 559, 973, 1115
MaeI CTAG 2 cut(s) 191, 908
MaeIII GTNAC 2 cut(s) 68, 156
MalI GATC 7 cut(s) 407, 495, 509, 558, 585, 819, 843
MboI GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 5 cut(s) 640, 675, 797, 880, 1088
MlyI GAGTC 4 cut(s) 92, 100, 248, 784
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 4 cut(s) 410, 663, 749, 1174
MslI CAYNNNNRTG 1 cut(s) 999
MspI CCGG 5 cut(s) 29, 88, 374, 450, 659
MspR9I CCNGG 4 cut(s) 30, 374, 375, 743
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 743
MvnI CGCG 2 cut(s) 280, 360
MwoI GCNNNNNNNGC 2 cut(s) 357, 600
NciI CCSGG 3 cut(s) 30, 374, 375
NdeII GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
NlaIII CATG 5 cut(s) 234, 428, 467, 563, 797
NlaIV GGNNCC 2 cut(s) 372, 379
NmuCI GTSAC 1 cut(s) 68
PagI TCATGA 3 cut(s) 463, 559, 793
PciSI GCTCTTC 2 cut(s) 774, 894
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 39, 929, 1144
PinAI ACCGGT 1 cut(s) 87
PkrI GCNGC 5 cut(s) 8, 11, 63, 602, 1129
PleI GAGTC 4 cut(s) 92, 100, 247, 783
PpsI GAGTC 4 cut(s) 92, 100, 247, 783
Psp6I CCWGG 1 cut(s) 741
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 372, 379
PspPI GGNCC 2 cut(s) 355, 370
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 405
RsaI GTAC 2 cut(s) 266, 293
RsaNI GTAC 2 cut(s) 265, 292
RseI CAYNNNNRTG 1 cut(s) 999
SapI GCTCTTC 2 cut(s) 774, 894
SaqAI TTAA 4 cut(s) 410, 663, 749, 1174
SatI GCNGC 5 cut(s) 7, 10, 62, 601, 1128
Sau3AI GATC 7 cut(s) 405, 493, 507, 556, 583, 817, 841
Sau96I GGNCC 2 cut(s) 355, 370
SchI GAGTC 4 cut(s) 92, 100, 248, 784
ScrFI CCNGG 4 cut(s) 30, 374, 375, 743
SduI GDGCHC 1 cut(s) 380
SfaNI GCATC 3 cut(s) 559, 973, 1115
SfcI CTRYAG 2 cut(s) 321, 601
SinI GGWCC 1 cut(s) 355
SmaI CCCGGG 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 999
Sse9I AATT 5 cut(s) 640, 675, 797, 880, 1088
SsiI CCGC 5 cut(s) 9, 26, 278, 358, 1104
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 191, 908
StyD4I CCNGG 4 cut(s) 28, 372, 373, 741
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 129, 582, 848
TasI AATT 5 cut(s) 640, 675, 797, 880, 1088
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 39, 929, 1144
Tru1I TTAA 4 cut(s) 410, 663, 749, 1174
Tru9I TTAA 4 cut(s) 410, 663, 749, 1174
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 4 cut(s) 6, 61, 600, 1127
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 5 cut(s) 7, 452, 711, 810, 1017
TspMI CCCGGG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 1 cut(s) 797
XmaI CCCGGG 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 191, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.