Rw1G005420
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000639
Physical Location & Seq
Reverse (-)
10429963 .. 10431698
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G005420.1

Sequence Viewer

Length: 1362 bp
ATGTGCTGCGGCGGCTTCACAGTTCCGAAGGGATACCGATTCCATCCCTCCGACGAGGAGCTGCTTAGTCACTACTTGGAGCAGAAGAATAAGTGCAAGGACGCCCAGATCACTACCATCATCCCTGAAATCGATGTGTGCAAGCACGAGCCTCGCGAGTTGCCAGAACTGGCGTTCACAAGGGCGGAAAGTCTGGGCACGAAATTTTTCTCTTTTTTCTTCTTTTGGTTTGTAGGGGAAGTGTCTTGGGACGATCAGGAAAAGTGGTACTTCTTCACTCCGCGTGATTACAAGTACAATAACAGCACTCGCTCCAACAGGACTACAGGGGAAGGGTTTTGGAAGATCACAGGCAAGGACCGTGCAATCAATGCCCCCGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCCTGACCTTCTACAAACGTGGAGTGCCGAAATTCCAGAAGACCAGCTGGGTTATTCATGAGTATTATCTCATTCAGGCACATTCTGATCCTCCTAAGCAGAAAGGGGACTTTGTTGTCTGCTGCTTGAAGTACAAGTCAGACAACTTTGATCATGATAAGGATGCTCCATTCTGCGATCGAGGTAGCAGTAGCTGCAAAAATTGGGCATCGAAAGAGCTGGTTAATGTTGTTCCAATTCCCAGTGGAAATGATGATGAAGCTGAAACTGGTGGTGGTATGATTACAGAAGAAGAGGAGTACCTGACTTTAAAGGAGCTGAGAGATGCTCTTCAGATTCCCATTGGCAATCCGCATGAATTCGAAGTCCAAGGCATGCAAACTGATCCTTGTCCTATAGATAAGAATGATCTTTCAACCACTGTTGAAGGCCAACCTGATAGAAGCAGTTCATCTGATATGATTAAAGAGCTACTAGATGACCCAGAAAATCTGGATTCACTCTTTCATCCGCCTGCACCACCTCAACTACATAACTCACCAATGTATACCACCAATGTCCATAATGATGAATGTCATAAGAGGACATATCCATTTGAGGATAATAACCCTTCTCTTACGAAGAAGAATATTATTTCAACAAATGATGATGACGAATTAGTTAGCAACACCGCATGTAGTTCTGAAAATCAAGCTGCAAATATGATTCCAGAGGGATATTCTCAACCAGGAGCAAATCTGGGATCAGAATTTGATTCATTTCTGCCAAAGGATTACGATTATACATTACCATCAATAAACGGAGGACCGAGAGATTTTTCCTATGACAATAATTTCTTTGAGTTTACTGATGGAGGTAGAGGAGTAACCAGTGGCAGAAAAACCGAAGTAGTACATGGATCGGTAAATGATTATTCTGCATTAGCCGTTGGAGCAACGCTCCAGCATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

453

Amino Acids

51.15

Weight (kDa)

4.99

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 159 1.9e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 956
AccII CGCG 2 cut(s) 156, 283
AciI CCGC 7 cut(s) 9, 12, 185, 281, 761, 920, 1080
AclWI GGATC 4 cut(s) 491, 788, 1159, 1315
AcsI RAATTY 4 cut(s) 203, 440, 767, 1157
AcuI CTGAAG 1 cut(s) 725
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 5 cut(s) 269, 296, 542, 710, 1302
AgsI TTSAA 4 cut(s) 538, 825, 836, 1047
AjnI CCWGG 1 cut(s) 1135
AlwI GGATC 4 cut(s) 491, 788, 1159, 1315
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 1 cut(s) 838
ApeKI GCWGC 5 cut(s) 6, 61, 531, 603, 1103
ApoI RAATTY 4 cut(s) 203, 440, 767, 1157
Asp700I GAANNNNTTC 2 cut(s) 206, 856
AspS9I GGNCC 3 cut(s) 358, 408, 1214
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 939
AsuII TTCGAA 1 cut(s) 771
AvaII GGWCC 3 cut(s) 358, 408, 1214
BaeGI GKGCMC 1 cut(s) 200
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 455
BbvI GCAGC 4 cut(s) 48, 518, 590, 1090
BccI CCATC 4 cut(s) 51, 125, 1207, 1253
BceAI ACGGC 1 cut(s) 1319
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 1137
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 2 cut(s) 324, 804
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1104
BlsI GCNGC 7 cut(s) 8, 11, 14, 63, 533, 605, 1105
Bme1390I CCNGG 2 cut(s) 378, 1137
Bme18I GGWCC 3 cut(s) 358, 408, 1214
BmgT120I GGNCC 3 cut(s) 358, 408, 1214
BmiI GGNNCC 2 cut(s) 382, 410
BmrFI CCNGG 2 cut(s) 378, 1137
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 3 cut(s) 562, 626, 724
BmuI ACTGGG 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 3 cut(s) 721, 753, 1332
BpmI CTGGAG 1 cut(s) 1334
Bpu10I CCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 771
BpuMI CCSGG 1 cut(s) 378
Bsa29I ATCGAT 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 376, 778
Bse1I ACTGG 4 cut(s) 174, 651, 682, 1278
BseBI CCWGG 1 cut(s) 1137
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 376, 778
BseGI GGATG 4 cut(s) 43, 120, 577, 916
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 4 cut(s) 174, 651, 682, 1278
BseRI GAGGAG 3 cut(s) 71, 719, 1284
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 4 cut(s) 48, 518, 590, 1090
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 2 cut(s) 156, 283
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 1 cut(s) 840
BshVI ATCGAT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 263, 530
BsmFI GGGAC 2 cut(s) 263, 530
BsnI GGCC 1 cut(s) 840
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 200
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 7 cut(s) 9, 12, 185, 281, 761, 920, 1080
BspANI GGCC 1 cut(s) 840
BspCNI CTCAG 1 cut(s) 720
BspDI ATCGAT 1 cut(s) 132
BspFNI CGCG 2 cut(s) 156, 283
BspHI TCATGA 2 cut(s) 466, 562
BspLI GGNNCC 2 cut(s) 382, 410
BspPI GGATC 4 cut(s) 491, 788, 1159, 1315
BspQI GCTCTTC 1 cut(s) 744
BspT104I TTCGAA 1 cut(s) 771
BsrI ACTGG 4 cut(s) 174, 651, 682, 1278
BssECI CCNNGG 2 cut(s) 376, 778
BssNAI GTATAC 1 cut(s) 957
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 778
Bst1107I GTATAC 1 cut(s) 957
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 3 cut(s) 22, 362, 832
Bst6I CTCTTC 2 cut(s) 696, 744
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 2 cut(s) 371, 603
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 3 cut(s) 143, 785, 924
BstDEI CTNAG 3 cut(s) 65, 504, 728
BstF5I GGATG 4 cut(s) 43, 120, 577, 916
BstFNI CGCG 2 cut(s) 156, 283
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1340
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 2 cut(s) 787, 1086
BstSCI CCNGG 2 cut(s) 376, 1135
BstSFI CTRYAG 2 cut(s) 324, 804
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 2 cut(s) 156, 283
BstV1I GCAGC 4 cut(s) 48, 518, 590, 1090
BstV2I GAAGAC 1 cut(s) 455
BstZ17I GTATAC 1 cut(s) 957
Bsu15I ATCGAT 1 cut(s) 132
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 840
BsuTUI ATCGAT 1 cut(s) 132
BtsCI GGATG 4 cut(s) 43, 120, 577, 916
BtsIMutI CAGTG 3 cut(s) 658, 828, 1285
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 143, 785, 924
CaiI CAGNNNCTG 1 cut(s) 603
CciI TCATGA 2 cut(s) 466, 562
Cfr13I GGNCC 3 cut(s) 358, 408, 1214
ClaI ATCGAT 1 cut(s) 132
CseI GACGC 1 cut(s) 110
Csp6I GTAC 5 cut(s) 268, 295, 541, 709, 1301
CviAII CATG 6 cut(s) 467, 563, 764, 784, 1083, 1304
CviQI GTAC 5 cut(s) 268, 295, 541, 709, 1301
DdeI CTNAG 3 cut(s) 65, 504, 728
DraI TTTAAA 1 cut(s) 720
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eam1104I CTCTTC 2 cut(s) 696, 744
EarI CTCTTC 2 cut(s) 696, 744
EciI GGCGGA 2 cut(s) 200, 909
Eco130I CCWWGG 1 cut(s) 778
Eco47I GGWCC 3 cut(s) 358, 408, 1214
Eco57I CTGAAG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 6 cut(s) 470, 566, 767, 787, 1086, 1307
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 263, 530
FatI CATG 6 cut(s) 466, 562, 763, 783, 1082, 1303
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1104
FokI GGATG 4 cut(s) 30, 107, 584, 903
Fsp4HI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1104
FspBI CTAG 1 cut(s) 884
GluI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1104
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 1334
HaeIII GGCC 1 cut(s) 840
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 6 cut(s) 470, 566, 767, 787, 1086, 1307
HinfI GANTC 5 cut(s) 39, 745, 905, 1114, 1163
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 939
Hpy166II GTNNAC 3 cut(s) 177, 957, 1254
Hpy188I TCNGA 8 cut(s) 27, 52, 496, 550, 744, 865, 1093, 1156
Hpy188III TCNNGA 7 cut(s) 155, 257, 445, 467, 563, 902, 1118
Hpy8I GTNNAC 3 cut(s) 177, 957, 1254
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 5 cut(s) 22, 326, 427, 830, 1029
HpyCH4III ACNGT 3 cut(s) 22, 362, 832
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 8 cut(s) 96, 141, 365, 606, 787, 926, 1106, 1328
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1340
HpyF3I CTNAG 3 cut(s) 65, 504, 728
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 6 cut(s) 470, 566, 767, 787, 1086, 1307
Ksp22I TGATCA 1 cut(s) 559
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 9 cut(s) 58, 79, 317, 386, 580, 724, 1139, 1340, 1353
Lsp1109I GCAGC 4 cut(s) 48, 518, 590, 1090
LweI GCATC 3 cut(s) 562, 626, 724
MaeI CTAG 1 cut(s) 884
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 68, 1273
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 8 cut(s) 203, 440, 610, 645, 767, 1064, 1157, 1240
MmeI TCCRAC 3 cut(s) 75, 339, 1318
MroXI GAANNNNTTC 2 cut(s) 206, 856
MseI TTAA 3 cut(s) 633, 719, 873
MslI CAYNNNNRTG 1 cut(s) 975
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 378, 1137
MvaI CCWGG 1 cut(s) 1137
MvnI CGCG 2 cut(s) 156, 283
MwoI GCNNNNNNNGC 4 cut(s) 12, 371, 603, 1340
NciI CCSGG 1 cut(s) 378
NlaIII CATG 6 cut(s) 470, 566, 767, 787, 1086, 1307
NlaIV GGNNCC 2 cut(s) 382, 410
NmuCI GTSAC 1 cut(s) 68
NruI TCGCGA 1 cut(s) 156
NspI RCATGY 2 cut(s) 787, 1086
NspV TTCGAA 1 cut(s) 771
PaeI GCATGC 1 cut(s) 787
PagI TCATGA 2 cut(s) 466, 562
PciSI GCTCTTC 1 cut(s) 744
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 2 cut(s) 206, 856
PfeI GAWTC 5 cut(s) 39, 745, 905, 1114, 1163
PkrI GCNGC 7 cut(s) 8, 11, 14, 63, 533, 605, 1105
Ple19I CGATCG 1 cut(s) 589
PpuMI RGGWCCY 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 1135
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 2 cut(s) 382, 410
PspPI GGNCC 3 cut(s) 358, 408, 1214
PspPPI RGGWCCY 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 603
PvuI CGATCG 1 cut(s) 589
PvuII CAGCTG 1 cut(s) 456
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 5 cut(s) 269, 296, 542, 710, 1302
RsaNI GTAC 5 cut(s) 268, 295, 541, 709, 1301
RseI CAYNNNNRTG 1 cut(s) 975
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 3 cut(s) 633, 719, 873
SatI GCNGC 7 cut(s) 7, 10, 13, 62, 532, 604, 1104
Sau96I GGNCC 3 cut(s) 358, 408, 1214
ScrFI CCNGG 2 cut(s) 378, 1137
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 3 cut(s) 562, 626, 724
SfcI CTRYAG 2 cut(s) 324, 804
SfuI TTCGAA 1 cut(s) 771
SinI GGWCC 3 cut(s) 358, 408, 1214
SmiMI CAYNNNNRTG 1 cut(s) 975
SphI GCATGC 1 cut(s) 787
Sse9I AATT 8 cut(s) 203, 440, 610, 645, 767, 1064, 1157, 1240
SsiI CCGC 7 cut(s) 9, 12, 185, 281, 761, 920, 1080
SspI AATATT 1 cut(s) 1039
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 376, 1135
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 3 cut(s) 22, 362, 832
TaiI ACGT 1 cut(s) 430
TaqI TCGA 4 cut(s) 132, 589, 620, 771
TaqII GACCGA 1 cut(s) 1231
TasI AATT 8 cut(s) 203, 440, 610, 645, 767, 1064, 1157, 1240
TatI WGTACW 3 cut(s) 294, 540, 1300
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 5 cut(s) 39, 745, 905, 1114, 1163
Tru1I TTAA 3 cut(s) 633, 719, 873
Tru9I TTAA 3 cut(s) 633, 719, 873
TscAI CASTG 3 cut(s) 658, 835, 1285
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 5 cut(s) 6, 61, 531, 603, 1103
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 7 cut(s) 455, 681, 780, 849, 905, 993, 1155
TspGWI ACGGA 1 cut(s) 1224
TspRI CASTG 3 cut(s) 658, 835, 1285
VpaK11BI GGWCC 3 cut(s) 358, 408, 1214
XapI RAATTY 4 cut(s) 203, 440, 767, 1157
XceI RCATGY 2 cut(s) 787, 1086
XmiI GTMKAC 1 cut(s) 956
XmnI GAANNNNTTC 2 cut(s) 206, 856
XspI CTAG 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.