Rmu_sc0003704.1_g000001
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003704.1
OG0000639
Physical Location & Seq
Forward (+)
1 .. 2452
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003704.1_g000001.1.cds

Sequence Viewer

Length: 1581 bp
cacaagaccggctatgttattcatgagtattatcacattcagccccattctgaccctcctaagcagataggggactttgttgtctgttgcttgaagtacaagcctgtctctgatcatgatgaggatgctccattctgcaatcgaggtagcggtagctgcagtatagtttccaatgttgcaaatcaggctgaagaaaatttggcgtccaacgagcagtttaatggcactgatgatgaagctgaaactggtggcggttggattactgaagcagaagaacacctggcatataagagagatggtcttcggactgccattggaaatcagaatggattccaaggctcgcagactgatccttgtaatctttggacctctgttgaaggtcaagctgatagaagcaattcgtctcatatgattgaagagcgactagatgatccagaaaatatggattcattctttcatccacctgtgccccctcaactgcatcagctacatcagtcaccgatgtataccaccaatgtccagaatgatgaatgccgtaagaggaaatatccatttgaagataatgactcttctcttacgaagaagaacaatatttcaaccaatgatggtgatgaactagtcagcaacaccactgctaattctgaaaaccaagctgcagatgtgatcctagagggtgaccctgttatctgtcgcttgaagaataaatcagataagaaggattctctggtaagtgatgaaggggaaccggatagcgcaggtgtgtctaactggaaaattcaagcggcacacaaaaatgatgaaccacttttacatcaacctcagcgtctggatgactgctgctcctctgcagtgcggtcaccagcatccccagagctggaagctgttctgcaattagccaatggtgatgattgtaataagttgcaatcaccatgtggagataatacttcttgtctagaagacaagaatgaagtttcaacctgttatgaagatgagactatggatggtgtgtttctacagctatgtgacttaccagaagtaaatctagattcatttttgcgtccaattcagccacaagattaccgcccctccatactgcagtcatcaatatacacaaagctgggaaatgttccagatgccaatcgctgttttagtgaatgcaagaattggcaatctgcatttaagaaaaaaacttcaaccaatgaagttgacataccgggtagacatatcatgtctaattttgaaaatcaagctacagattctgtgattctagaggagcattgtcaaaccaaagaaaatatggaatcagcgttttatccattgcagctagaagattcagctctgcagtcgatgatgtacacaaaacatggagatgctctacataatattgaatgcaatgagttgcaatcttactgttctgatcaaatagctcaaactccctccatagactccaacctaccgaactcattgggaagggtctaccatggggatagtggaataagcagctatgatacgaacactgaagtcgctcatggatgggaacaacatacatctgcattagctattggaaaccctccaatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

526

Amino Acids

58.48

Weight (kDa)

4.56

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 746
AasI GACNNNNNNGTC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 746
AccI GTMKAC 3 cut(s) 506, 1219, 1476
AciI CCGC 5 cut(s) 150, 252, 782, 853, 1081
AclWI GGATC 3 cut(s) 344, 425, 658
AcsI RAATTY 2 cut(s) 196, 774
AcuI CTGAAG 3 cut(s) 210, 285, 1539
AcyI GRCGYC 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 932
AfaI GTAC 2 cut(s) 98, 1355
AfiI CCNNNNNNNGG 1 cut(s) 874
AhlI ACTAGT 1 cut(s) 616
AjnI CCWGG 1 cut(s) 279
Alw26I GTCTC 3 cut(s) 112, 408, 986
AlwI GGATC 3 cut(s) 344, 425, 658
AlwNI CAGNNNCTG 2 cut(s) 826, 1259
ApeKI GCWGC 5 cut(s) 156, 653, 837, 1321, 1500
ApoI RAATTY 2 cut(s) 196, 774
Asp700I GAANNNNTTC 3 cut(s) 329, 397, 882
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 1215
AsuHPI GGTGA 6 cut(s) 489, 620, 686, 849, 914, 918
AvaII GGWCC 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 471
BarI GAAGNNNNNNTAC 2 cut(s) 1194, 1226
BbsI GAAGAC 2 cut(s) 293, 963
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 5 cut(s) 143, 640, 824, 1333, 1512
BccI CCATC 4 cut(s) 290, 599, 995, 1527
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 1 cut(s) 281
BclI TGATCA 2 cut(s) 112, 1417
BcnI CCSGG 1 cut(s) 1215
BcoDI GTCTC 3 cut(s) 112, 408, 986
BcuI ACTAGT 1 cut(s) 616
BfaI CTAG 7 cut(s) 425, 617, 668, 953, 1043, 1268, 1325
BfmI CTRYAG 7 cut(s) 157, 654, 846, 1013, 1094, 1251, 1340
BfuAI ACCTGC 1 cut(s) 746
BisI GCNGC 6 cut(s) 157, 654, 783, 838, 1322, 1501
BlsI GCNGC 6 cut(s) 158, 655, 784, 839, 1323, 1502
Bme1390I CCNGG 2 cut(s) 281, 1215
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 744
BmrFI CCNGG 2 cut(s) 281, 1215
BmsI GCATC 5 cut(s) 115, 490, 872, 1123, 1360
BpiI GAAGAC 2 cut(s) 293, 963
Bpu10I CCTNAGC 2 cut(s) 60, 819
BpuMI CCSGG 1 cut(s) 1215
BsaBI GATNNNNATC 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 334, 1480
BsaWI WCCGGW 1 cut(s) 745
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 1070, 1100
Bsc4I CCNNNNNNNGG 1 cut(s) 874
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 250, 773
Bse3DI GCAATG 2 cut(s) 1316, 1399
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 334, 1480
BseGI GGATG 6 cut(s) 130, 457, 835, 863, 1006, 1538
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 1 cut(s) 874
BseMI GCAATG 2 cut(s) 1316, 1399
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 2 cut(s) 250, 773
BseRI GAGGAG 2 cut(s) 832, 1286
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 5 cut(s) 143, 640, 824, 1333, 1512
BseYI CCCAGC 1 cut(s) 1117
BsiSI CCGG 3 cut(s) 9, 746, 1214
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 874
BsmAI GTCTC 3 cut(s) 112, 408, 986
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 3 cut(s) 536, 1160, 1394
Bsp1286I GDGCHC 1 cut(s) 471
Bsp1407I TGTACA 1 cut(s) 1353
Bsp143I GATC 5 cut(s) 112, 349, 430, 663, 1417
Bsp19I CCATGG 1 cut(s) 1480
BspACI CCGC 5 cut(s) 150, 252, 782, 853, 1081
BspCNI CTCAG 1 cut(s) 832
BspHI TCATGA 2 cut(s) 22, 115
BspLI GGNNCC 1 cut(s) 744
BspMAI CTGCAG 5 cut(s) 161, 658, 850, 1098, 1344
BspMI ACCTGC 1 cut(s) 746
BspPI GGATC 3 cut(s) 344, 425, 658
BspQI GCTCTTC 1 cut(s) 411
BsrDI GCAATG 2 cut(s) 1316, 1399
BsrFI RCCGGY 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 1353
BsrI ACTGG 2 cut(s) 250, 773
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 334, 1480
BssMI GATC 5 cut(s) 112, 349, 430, 663, 1417
BssNAI GTATAC 1 cut(s) 507
BssNI GRCGYC 1 cut(s) 203
BssT1I CCWWGG 2 cut(s) 334, 1480
Bst1107I GTATAC 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 1412
Bst6I CTCTTC 2 cut(s) 411, 574
BstACI GRCGYC 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 1353
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 60, 819
BstDSI CCRYGG 1 cut(s) 1480
BstEII GGTNACC 2 cut(s) 674, 855
BstF5I GGATG 6 cut(s) 130, 457, 835, 863, 1006, 1538
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 5 cut(s) 115, 352, 433, 666, 1420
BstMAI GTCTC 3 cut(s) 112, 408, 986
BstMBI GATC 5 cut(s) 112, 349, 430, 663, 1417
BstMWI GCNNNNNNNGC 2 cut(s) 156, 185
BstNI CCWGG 1 cut(s) 281
BstPI GGTNACC 2 cut(s) 674, 855
BstSCI CCNGG 2 cut(s) 279, 1213
BstSFI CTRYAG 7 cut(s) 157, 654, 846, 1013, 1094, 1251, 1340
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 5 cut(s) 143, 640, 824, 1333, 1512
BstV2I GAAGAC 2 cut(s) 293, 963
BstZ17I GTATAC 1 cut(s) 507
BtgI CCRYGG 1 cut(s) 1480
BtsCI GGATG 6 cut(s) 130, 457, 835, 863, 1006, 1538
BtsI GCAGTG 2 cut(s) 630, 855
BtsIMutI CAGTG 4 cut(s) 225, 630, 855, 1515
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 1 cut(s) 341
CaiI CAGNNNCTG 2 cut(s) 826, 1259
CciI TCATGA 2 cut(s) 22, 115
CfoI GCGC 1 cut(s) 755
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 366
CseI GACGC 3 cut(s) 192, 812, 1046
Csp6I GTAC 2 cut(s) 97, 1354
CviAII CATG 7 cut(s) 23, 116, 930, 1228, 1364, 1481, 1529
CviQI GTAC 2 cut(s) 97, 1354
DdeI CTNAG 2 cut(s) 60, 819
DpnI GATC 5 cut(s) 114, 351, 432, 665, 1419
DpnII GATC 5 cut(s) 112, 349, 430, 663, 1417
DraIII CACNNNGTG 1 cut(s) 932
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 411, 574
EarI CTCTTC 2 cut(s) 411, 574
Eco130I CCWWGG 2 cut(s) 334, 1480
Eco47I GGWCC 1 cut(s) 366
Eco57I CTGAAG 3 cut(s) 210, 285, 1539
Eco91I GGTNACC 2 cut(s) 674, 855
EcoO65I GGTNACC 2 cut(s) 674, 855
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 334, 1480
ErhI CCWWGG 2 cut(s) 334, 1480
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 7 cut(s) 26, 119, 933, 1231, 1367, 1484, 1532
FaqI GGGAC 1 cut(s) 86
FatI CATG 7 cut(s) 22, 115, 929, 1227, 1363, 1480, 1528
FauNDI CATATG 1 cut(s) 408
FbaI TGATCA 2 cut(s) 112, 1417
FblI GTMKAC 3 cut(s) 506, 1219, 1476
Fnu4HI GCNGC 6 cut(s) 157, 654, 783, 838, 1322, 1501
FokI GGATG 6 cut(s) 137, 444, 842, 850, 1013, 1545
Fsp4HI GCNGC 6 cut(s) 157, 654, 783, 838, 1322, 1501
FspBI CTAG 7 cut(s) 425, 617, 668, 953, 1043, 1268, 1325
GlaI GCGC 1 cut(s) 754
GluI GCNGC 6 cut(s) 157, 654, 783, 838, 1322, 1501
GsaI CCCAGC 1 cut(s) 1121
HapII CCGG 3 cut(s) 9, 746, 1214
HgaI GACGC 3 cut(s) 192, 812, 1046
HhaI GCGC 1 cut(s) 755
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 7 cut(s) 26, 119, 933, 1231, 1367, 1484, 1532
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HpaII CCGG 3 cut(s) 9, 746, 1214
HphI GGTGA 6 cut(s) 489, 620, 686, 849, 914, 918
Hpy166II GTNNAC 5 cut(s) 507, 1207, 1220, 1356, 1477
Hpy188I TCNGA 7 cut(s) 52, 112, 306, 324, 643, 709, 1417
Hpy188III TCNNGA 9 cut(s) 23, 116, 434, 520, 827, 953, 1043, 1130, 1268
Hpy8I GTNNAC 5 cut(s) 507, 1207, 1220, 1356, 1477
HpyAV CCTTC 4 cut(s) 371, 709, 731, 1464
HpyCH4III ACNGT 1 cut(s) 1412
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 185
HpyF3I CTNAG 2 cut(s) 60, 819
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 7 cut(s) 26, 119, 933, 1231, 1367, 1484, 1532
HspAI GCGC 1 cut(s) 753
Ksp22I TGATCA 2 cut(s) 112, 1417
Kzo9I GATC 5 cut(s) 112, 349, 430, 663, 1417
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 133, 845, 1273
Lsp1109I GCAGC 5 cut(s) 143, 640, 824, 1333, 1512
LweI GCATC 5 cut(s) 115, 490, 872, 1123, 1360
MaeI CTAG 7 cut(s) 425, 617, 668, 953, 1043, 1268, 1325
MaeIII GTNAC 4 cut(s) 495, 674, 855, 1022
MalI GATC 5 cut(s) 114, 351, 432, 665, 1419
MboI GATC 5 cut(s) 112, 349, 430, 663, 1417
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 8 cut(s) 196, 397, 637, 774, 890, 1062, 1162, 1234
MlyI GAGTC 2 cut(s) 560, 1439
MmeI TCCRAC 3 cut(s) 231, 236, 1473
MroXI GAANNNNTTC 3 cut(s) 329, 397, 882
MseI TTAA 2 cut(s) 219, 1179
MslI CAYNNNNRTG 2 cut(s) 792, 1368
MspI CCGG 3 cut(s) 9, 746, 1214
MspR9I CCNGG 2 cut(s) 281, 1215
Mva1269I GAATGC 3 cut(s) 536, 1160, 1394
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 156, 185
NciI CCSGG 1 cut(s) 1215
NcoI CCATGG 1 cut(s) 1480
NdeI CATATG 1 cut(s) 408
NdeII GATC 5 cut(s) 112, 349, 430, 663, 1417
NlaIII CATG 7 cut(s) 26, 119, 933, 1231, 1367, 1484, 1532
NlaIV GGNNCC 1 cut(s) 744
NmuCI GTSAC 4 cut(s) 495, 674, 855, 1022
PagI TCATGA 2 cut(s) 22, 115
PaqCI CACCTGC 1 cut(s) 746
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 3 cut(s) 536, 1160, 1394
PdmI GAANNNNTTC 3 cut(s) 329, 397, 882
PfeI GAWTC 8 cut(s) 330, 446, 719, 1046, 1256, 1264, 1301, 1331
PkrI GCNGC 6 cut(s) 158, 655, 784, 839, 1323, 1502
PleI GAGTC 2 cut(s) 560, 1439
PpsI GAGTC 2 cut(s) 560, 1439
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 2 cut(s) 674, 855
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 744
PspPI GGNCC 1 cut(s) 366
PsrI GAACNNNNNNTAC 2 cut(s) 792, 824
PstI CTGCAG 5 cut(s) 161, 658, 850, 1098, 1344
PstNI CAGNNNCTG 2 cut(s) 826, 1259
RsaI GTAC 2 cut(s) 98, 1355
RsaNI GTAC 2 cut(s) 97, 1354
RseI CAYNNNNRTG 2 cut(s) 792, 1368
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 219, 1179
SatI GCNGC 6 cut(s) 157, 654, 783, 838, 1322, 1501
Sau3AI GATC 5 cut(s) 112, 349, 430, 663, 1417
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 2 cut(s) 560, 1439
ScrFI CCNGG 2 cut(s) 281, 1215
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 5 cut(s) 115, 490, 872, 1123, 1360
SfcI CTRYAG 7 cut(s) 157, 654, 846, 1013, 1094, 1251, 1340
SinI GGWCC 1 cut(s) 366
SmiMI CAYNNNNRTG 2 cut(s) 792, 1368
SpeI ACTAGT 1 cut(s) 616
Sse9I AATT 8 cut(s) 196, 397, 637, 774, 890, 1062, 1162, 1234
SsiI CCGC 5 cut(s) 150, 252, 782, 853, 1081
SspI AATATT 2 cut(s) 592, 1384
SspMI CTAG 7 cut(s) 425, 617, 668, 953, 1043, 1268, 1325
StyD4I CCNGG 2 cut(s) 279, 1213
StyI CCWWGG 2 cut(s) 334, 1480
TaaI ACNGT 1 cut(s) 1412
TaqI TCGA 2 cut(s) 142, 1346
TasI AATT 8 cut(s) 196, 397, 637, 774, 890, 1062, 1162, 1234
TatI WGTACW 2 cut(s) 96, 1353
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 8 cut(s) 330, 446, 719, 1046, 1256, 1264, 1301, 1331
Tru1I TTAA 2 cut(s) 219, 1179
Tru9I TTAA 2 cut(s) 219, 1179
TscAI CASTG 4 cut(s) 232, 637, 855, 1522
TseFI GTSAC 4 cut(s) 495, 674, 855, 1022
TseI GCWGC 5 cut(s) 156, 653, 837, 1321, 1500
Tsp45I GTSAC 4 cut(s) 495, 674, 855, 1022
TspRI CASTG 4 cut(s) 232, 637, 855, 1522
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 2 cut(s) 196, 774
XbaI TCTAGA 3 cut(s) 952, 1042, 1267
XcmI CCANNNNNNNNNTGG 2 cut(s) 1294, 1487
XmiI GTMKAC 3 cut(s) 506, 1219, 1476
XmnI GAANNNNTTC 3 cut(s) 329, 397, 882
XspI CTAG 7 cut(s) 425, 617, 668, 953, 1043, 1268, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.