Rmu_sc0003704.1_g000002
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003704.1
OG0000639
Physical Location & Seq
Forward (+)
3505 .. 5953
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003704.1_g000002.1.cds

Sequence Viewer

Length: 1143 bp
atgagctgcggcggcttcacagttccaccgggatacggattccatcccaccgacgagaagctgcttagtgacttggaggagaagaatcagtgcaaggactccgagatcaccaccatcatccctgaaatcgatgtctgcaagcacgagcctcacgagttaccaggaagtttttctcttttttcttcttctggtttgcatgggcagtcttgggacagtcagggcaagtggtacttcttcactccgcgtgaatacaagtaccctaacagcagacgctccaacaggactacaagggaagggttctggaagatcacaggcaaggacagagacatcaaggcccttcgctccaaagctgtgattgagagaaggaggaccttgaccttctacaaacgtggagtgtcgaaatcccagaagactggctgggtcattcatgagtattatctcattcaggcacattctgatcctcctaagcagataggggactttgtagtctgttgcttgaagtataagtcagacaactctgatcatgataaggatgccccattcttcgatcgaggtagcactagctgcagtatggcctccaatgttgaaaatcaagctgaagaaaattgggcatccattaagcaggttaacgttgttccaattcccaatggaaatgatgatgaagctgaaactggtggtggtacgattacagaagaagaggaatacctggctttaaaggagctggaagatgctcttcaaattcccattggcaatcctcatgacttccaaggcatgcaaactgatccttgtcatatagatgagaatgatctttcaacctctgttgaaggccgacctgataaaagcaattcatctgatatgattgaagagccactagataacccagaaaatctggattcaatctttgatccgcctgcgctgcctcaactgcatcagctacatcagtcaccaatgtatacgaccaatgaccataatgatgaatgtcgtaagaggacatatccatttgaggataatgacccttcacttacgaagaagaatagtatttcaaccaatgatgacgacgaattagttagcaacaccgcatctagtccagaaaatcaagctgcaaatatgattccagaggtgagaataagcatgctcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

380

Amino Acids

42.99

Weight (kDa)

4.81

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 485
Acc36I ACCTGC 1 cut(s) 613
AccI GTMKAC 1 cut(s) 953
AccII CGCG 1 cut(s) 244
AciI CCGC 5 cut(s) 9, 12, 242, 908, 1077
AclI AACGTT 1 cut(s) 630
AclWI GGATC 3 cut(s) 452, 776, 899
AcsI RAATTY 1 cut(s) 738
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 3 cut(s) 230, 257, 682
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 8 cut(s) 499, 587, 737, 813, 824, 863, 897, 1044
AjnI CCWGG 2 cut(s) 160, 705
AluBI AGCT 9 cut(s) 6, 61, 350, 564, 596, 665, 721, 934, 1100
AluI AGCT 9 cut(s) 6, 61, 350, 564, 596, 665, 721, 934, 1100
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 3 cut(s) 452, 776, 899
AoxI GGCC 3 cut(s) 333, 573, 826
ApeKI GCWGC 5 cut(s) 6, 61, 564, 916, 1100
ApoI RAATTY 1 cut(s) 738
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 916
AspS9I GGNCC 2 cut(s) 334, 369
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 100, 936, 1132
AvaII GGWCC 1 cut(s) 369
BauI CACGAG 2 cut(s) 143, 152
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 4 cut(s) 48, 551, 903, 1087
BccI CCATC 2 cut(s) 51, 122
BciT130I CCWGG 2 cut(s) 162, 707
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 3 cut(s) 561, 872, 1083
BfmI CTRYAG 1 cut(s) 565
BfuAI ACCTGC 1 cut(s) 613
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 7 cut(s) 7, 10, 13, 62, 565, 917, 1101
BlsI GCNGC 7 cut(s) 8, 11, 14, 63, 566, 918, 1102
Bme1390I CCNGG 3 cut(s) 30, 162, 707
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 334, 369
BmrFI CCNGG 3 cut(s) 30, 162, 707
BmsI GCATC 5 cut(s) 523, 620, 718, 937, 1088
BpiI GAAGAC 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 766
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 418, 676
BseBI CCWGG 2 cut(s) 162, 707
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 4 cut(s) 43, 117, 538, 611
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 418, 676
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 48, 551, 903, 1087
BseYI CCCAGC 1 cut(s) 417
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 550
BshFI GGCC 3 cut(s) 335, 575, 828
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 550
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 224, 491
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 2 cut(s) 224, 491
BsnI GGCC 3 cut(s) 335, 575, 828
Bsp143I GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
BspACI CCGC 5 cut(s) 9, 12, 242, 908, 1077
BspANI GGCC 3 cut(s) 335, 575, 828
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 3 cut(s) 427, 523, 757
BspMAI CTGCAG 1 cut(s) 569
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 3 cut(s) 452, 776, 899
BspQI GCTCTTC 2 cut(s) 738, 858
BsrI ACTGG 2 cut(s) 418, 676
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
BssNAI GTATAC 1 cut(s) 954
BssSI CACGAG 2 cut(s) 143, 152
BssT1I CCWWGG 1 cut(s) 766
Bst1107I GTATAC 1 cut(s) 954
Bst2BI CACGAG 2 cut(s) 143, 152
Bst2UI CCWGG 2 cut(s) 162, 707
Bst4CI ACNGT 2 cut(s) 22, 215
Bst6I CTCTTC 3 cut(s) 690, 738, 858
BstAPI GCANNNNNTGC 1 cut(s) 564
BstC8I GCNNGC 4 cut(s) 140, 773, 912, 1133
BstDEI CTNAG 2 cut(s) 65, 465
BstF5I GGATG 4 cut(s) 43, 117, 538, 611
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 8 cut(s) 108, 309, 460, 523, 550, 784, 808, 907
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
BstMCI CGRYCG 1 cut(s) 550
BstMWI GCNNNNNNNGC 4 cut(s) 12, 564, 916, 925
BstNI CCWGG 2 cut(s) 162, 707
BstNSI RCATGY 2 cut(s) 775, 1135
BstSCI CCNGG 3 cut(s) 28, 160, 705
BstSFI CTRYAG 1 cut(s) 565
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 4 cut(s) 48, 551, 903, 1087
BstV2I GAAGAC 1 cut(s) 416
BstXI CCANNNNNNTGG 1 cut(s) 413
BstZ17I GTATAC 1 cut(s) 954
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 335, 575, 828
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 4 cut(s) 43, 117, 538, 611
BtsIMutI CAGTG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 4 cut(s) 140, 773, 912, 1133
CciI TCATGA 3 cut(s) 427, 523, 757
CfoI GCGC 1 cut(s) 916
Cfr13I GGNCC 2 cut(s) 334, 369
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 279
Csp6I GTAC 3 cut(s) 229, 256, 681
CviAII CATG 6 cut(s) 197, 428, 524, 758, 772, 1132
CviQI GTAC 3 cut(s) 229, 256, 681
DdeI CTNAG 2 cut(s) 65, 465
DpnI GATC 8 cut(s) 107, 308, 459, 522, 549, 783, 807, 906
DpnII GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
DraI TTTAAA 1 cut(s) 714
DrdI GACNNNNNNGTC 1 cut(s) 485
DseDI GACNNNNNNGTC 1 cut(s) 485
Eam1104I CTCTTC 3 cut(s) 690, 738, 858
EarI CTCTTC 3 cut(s) 690, 738, 858
EciI GGCGGA 1 cut(s) 897
Eco130I CCWWGG 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 618
EcoO109I RGGNCCY 2 cut(s) 334, 369
EcoRII CCWGG 2 cut(s) 160, 705
EcoT14I CCWWGG 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 766
FaeI CATG 6 cut(s) 200, 431, 527, 761, 775, 1135
FalI AAGNNNNNCTT 4 cut(s) 215, 247, 717, 749
FaqI GGGAC 2 cut(s) 224, 491
FatI CATG 6 cut(s) 196, 427, 523, 757, 771, 1131
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 953
Fnu4HI GCNGC 7 cut(s) 7, 10, 13, 62, 565, 917, 1101
FokI GGATG 4 cut(s) 30, 104, 545, 598
Fsp4HI GCNGC 7 cut(s) 7, 10, 13, 62, 565, 917, 1101
FspBI CTAG 3 cut(s) 561, 872, 1083
GlaI GCGC 1 cut(s) 915
GluI GCNGC 7 cut(s) 7, 10, 13, 62, 565, 917, 1101
GsaI CCCAGC 1 cut(s) 421
HaeIII GGCC 3 cut(s) 335, 575, 828
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 279
HhaI GCGC 1 cut(s) 916
Hin1II CATG 6 cut(s) 200, 431, 527, 761, 775, 1135
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 5 cut(s) 39, 85, 98, 893, 1111
HpaI GTTAAC 1 cut(s) 628
HpaII CCGG 1 cut(s) 29
HphI GGTGA 3 cut(s) 100, 936, 1132
Hpy166II GTNNAC 2 cut(s) 628, 954
Hpy188I TCNGA 5 cut(s) 103, 457, 511, 520, 853
Hpy188III TCNNGA 8 cut(s) 152, 301, 428, 524, 758, 890, 1088, 1115
Hpy8I GTNNAC 2 cut(s) 628, 954
Hpy99I CGWCG 2 cut(s) 56, 1061
HpyAV CCTTC 6 cut(s) 287, 347, 357, 388, 818, 1026
HpyCH4III ACNGT 2 cut(s) 22, 215
HpyCH4IV ACGT 2 cut(s) 388, 630
HpyCH4V TGCA 7 cut(s) 93, 138, 196, 567, 775, 928, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 564, 916, 925
HpyF3I CTNAG 2 cut(s) 65, 465
HpySE526I ACGT 2 cut(s) 388, 630
Hsp92II CATG 6 cut(s) 200, 431, 527, 761, 775, 1135
HspAI GCGC 1 cut(s) 914
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 628
Kzo9I GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
LguI GCTCTTC 2 cut(s) 738, 858
LmnI GCTCC 3 cut(s) 278, 347, 718
Lsp1109I GCAGC 4 cut(s) 48, 551, 903, 1087
LweI GCATC 5 cut(s) 523, 620, 718, 937, 1088
MaeI CTAG 3 cut(s) 561, 872, 1083
MaeII ACGT 2 cut(s) 388, 630
MaeIII GTNAC 3 cut(s) 68, 156, 942
MalI GATC 8 cut(s) 107, 308, 459, 522, 549, 783, 807, 906
MboI GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
MluCI AATT 5 cut(s) 604, 639, 738, 844, 1061
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 300
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 4 cut(s) 618, 627, 713, 1141
MslI CAYNNNNRTG 2 cut(s) 795, 972
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 3 cut(s) 30, 162, 707
MvaI CCWGG 2 cut(s) 162, 707
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 12, 564, 916, 925
NciI CCSGG 1 cut(s) 30
NdeII GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
NlaIII CATG 6 cut(s) 200, 431, 527, 761, 775, 1135
NmuCI GTSAC 2 cut(s) 68, 942
NspI RCATGY 2 cut(s) 775, 1135
PaeI GCATGC 2 cut(s) 775, 1135
PagI TCATGA 3 cut(s) 427, 523, 757
PciSI GCTCTTC 2 cut(s) 738, 858
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 4 cut(s) 39, 85, 893, 1111
PkrI GCNGC 7 cut(s) 8, 11, 14, 63, 566, 918, 1102
Ple19I CGATCG 1 cut(s) 550
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 160, 705
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 2 cut(s) 160, 705
PspPI GGNCC 2 cut(s) 334, 369
PspPPI RGGWCCY 1 cut(s) 369
PstI CTGCAG 1 cut(s) 569
PvuI CGATCG 1 cut(s) 550
RsaI GTAC 3 cut(s) 230, 257, 682
RsaNI GTAC 3 cut(s) 229, 256, 681
RseI CAYNNNNRTG 2 cut(s) 795, 972
SapI GCTCTTC 2 cut(s) 738, 858
SaqAI TTAA 4 cut(s) 618, 627, 713, 1141
SatI GCNGC 7 cut(s) 7, 10, 13, 62, 565, 917, 1101
Sau3AI GATC 8 cut(s) 105, 306, 457, 520, 547, 781, 805, 904
Sau96I GGNCC 2 cut(s) 334, 369
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 3 cut(s) 30, 162, 707
SfaNI GCATC 5 cut(s) 523, 620, 718, 937, 1088
SfcI CTRYAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 795, 972
SphI GCATGC 2 cut(s) 775, 1135
Sse9I AATT 5 cut(s) 604, 639, 738, 844, 1061
SsiI CCGC 5 cut(s) 9, 12, 242, 908, 1077
SspMI CTAG 3 cut(s) 561, 872, 1083
StyD4I CCNGG 3 cut(s) 28, 160, 705
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 2 cut(s) 22, 215
TaiI ACGT 2 cut(s) 391, 633
TaqI TCGA 4 cut(s) 129, 398, 546, 550
TasI AATT 5 cut(s) 604, 639, 738, 844, 1061
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 4 cut(s) 39, 85, 893, 1111
Tru1I TTAA 4 cut(s) 618, 627, 713, 1141
Tru9I TTAA 4 cut(s) 618, 627, 713, 1141
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 68, 942
TseI GCWGC 5 cut(s) 6, 61, 564, 916, 1100
Tsp45I GTSAC 2 cut(s) 68, 942
TspDTI ATGAA 4 cut(s) 416, 675, 837, 990
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 369
XapI RAATTY 1 cut(s) 738
XceI RCATGY 2 cut(s) 775, 1135
XmiI GTMKAC 1 cut(s) 953
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 3 cut(s) 561, 872, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.