Rmu_sc0003693.1_g000003
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003693.1
OG0000639
Physical Location & Seq
Forward (+)
11207 .. 15079
3873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003693.1_g000003.1.cds

Sequence Viewer

Length: 1275 bp
atgagctgcggcggcttcacagttccaccgggatacggattccatcccaccgacgagaagctgcttagtgacttggaggagaagaatcagtgcaaggactccgagatcaccaccatcatccctgaaatcgatgtctgcaagcacgagcctcacgagttaccagagtcttgggacagtcagggcaagtggtacttcttcactccgcgtgaatacaagtaccctaacagcaaacgctccaacaggactacaagggaagggttctggaagatcacaggcaaggacagagacatcaaggcccttcgctccaaagctgtgattgagagaaggaggaccttgaccttctacaaacgtggagtgtcgaaatcccagaagactggctgggtcattcatgagtattatctcattcaggcacattctgatcctcctaagcagataggggactttgtagtctgttgcttgaagtataagtcagacaactctgatcatgataaggatgccccattcttcgatcgaggtagcactagctgcagtatggcctccaatgttgaaaatcaagctgaagaaaattgggcatccattaagcaggttaacgttgttccaattcccaatggaaatgatgatgaagctgaaactggtggtggtacgattacagaagaagaggaatacctggctttaaaggagctggaagatgctcttcaaattcccattggcaatcctcatgacttccaaggcatgcaaactgatccttgtcatatagatgagaatgatctttcaacctctgttgaaggccgacctgataaaagcaattcatctgatatgattgaagagccactagataacccagaaaatctggattcaatctttgatccgcctgcgctgcctcaactgcatcagctacatcagtcaccaatgtatacgaccaatgaccataatgatgaatgtcgtaagaggacatatccatttgaggataatgacccttcacttacgaagaagaatagtatttcaaccaatgatgacgacgaattagttagcaacaccgcatctagtccagaaaatcaagctgcaaatatgattccagagggatatcctcaaccaggaacaaatctaggatcagaatttgaatcatttctgccaaaggattacgattatacactaccatcaataaaaggaggaccgtcagtgaagctgcagaggcattatattgctgttcatcttgcccaggagaaactgaaagtcctggaagcagacaacaatttgaagctggcagcaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

424

Amino Acids

47.92

Weight (kDa)

4.84

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000639)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020 FvH4_7g18020
rosa_chinensis RchiOBHm_Chr1g0324821 RchiOBHm_Chr1g0333801 RchiOBHm_Chr1g0361601 RchiOBHm_Chr1g0361611 RchiOBHm_Chr1g0361661
rosa_laevigata RLG00000027711 RLG00000027712 RLG00000027714 RLG00000027715 RLG00000027716 RLG00000029530 RLG00000029531 RLG00000030172
rosa_multiflora Rmu_co8302323.1_g000001 Rmu_co8459497.1_g000001 Rmu_sc0003426.1_g000013 Rmu_sc0003693.1_g000002 Rmu_sc0003693.1_g000003 Rmu_sc0003704.1_g000001 Rmu_sc0003704.1_g000002 Rmu_sc0006101.1_g000001 Rmu_sc0006101.1_g000010 Rmu_sc0006417.1_g000001 Rmu_sc0006417.1_g000002 Rmu_sc0006417.1_g000005 Rmu_sc0007217.1_g000011 Rmu_sc0010981.1_g000006 Rmu_sc0011258.1_g000006 Rmu_sc0017253.1_g000003 Rmu_sc0017253.1_g000004 Rmu_sc0017750.1_g000001 Rmu_sc0026316.1_g000001 Rmu_sc0038193.1_g000002 Rmu_sc0041549.1_g000001
rosa_roxburghii Rroxscaffold_159G00433000 Rroxscaffold_159G00433050 Rroxscaffold_159G00433080 Rroxscaffold_4G00294830 Rroxscaffold_4G00294840 Rroxscaffold_4G00294900 Rroxscaffold_4G00294910 Rroxscaffold_4G00294920 Rroxscaffold_4G00317230 Rroxscaffold_4G00325170 Rroxscaffold_4G00325200 Rroxscaffold_4G00325280
rosa_rugosa Rorug01G0048000 Rorug01G0111600 Rorug01G0111700 Rorug01G0290200 Rorug01G0290300 Rorug01G0290300 Rorug01G0290400 Rorug01G0290600
rosa_samantha Rh1AG064300 Rh1AG064500 Rh1AG134000 Rh1AG134100 Rh1AG300500 Rh1AG300600
rosa_wichuraiana Rw1G005340 Rw1G005390 Rw1G005420 Rw1G011180 Rw1G011190 Rw1G026650 Rw1G026660 Rw1G026680 Rw1G026690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 914
AccII CGCG 1 cut(s) 205
AciI CCGC 5 cut(s) 9, 12, 203, 869, 1038
AclI AACGTT 1 cut(s) 591
AclWI GGATC 4 cut(s) 413, 737, 860, 1117
AcsI RAATTY 2 cut(s) 699, 1115
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 3 cut(s) 191, 218, 643
AfiI CCNNNNNNNGG 2 cut(s) 35, 1094
AjnI CCWGG 4 cut(s) 666, 1093, 1218, 1236
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 4 cut(s) 413, 737, 860, 1117
AoxI GGCC 3 cut(s) 294, 534, 787
ApeKI GCWGC 7 cut(s) 6, 61, 525, 877, 1061, 1186, 1265
ApoI RAATTY 2 cut(s) 699, 1115
Asp700I GAANNNNTTC 1 cut(s) 1125
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 3 cut(s) 295, 330, 1172
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 100, 897
AvaII GGWCC 2 cut(s) 330, 1172
BauI CACGAG 2 cut(s) 143, 152
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 5 cut(s) 48, 512, 864, 1048, 1173
BccI CCATC 3 cut(s) 51, 122, 1165
BciT130I CCWGG 4 cut(s) 668, 1095, 1220, 1238
BciVI GTATCC 1 cut(s) 26
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 4 cut(s) 522, 833, 1044, 1106
BfmI CTRYAG 2 cut(s) 526, 1187
BfuAI ACCTGC 1 cut(s) 574
BfuI GTATCC 1 cut(s) 26
BisI GCNGC 9 cut(s) 7, 10, 13, 62, 526, 878, 1062, 1187, 1266
BlsI GCNGC 9 cut(s) 8, 11, 14, 63, 527, 879, 1063, 1188, 1267
Bme1390I CCNGG 5 cut(s) 30, 668, 1095, 1220, 1238
Bme18I GGWCC 2 cut(s) 330, 1172
BmgT120I GGNCC 3 cut(s) 295, 330, 1172
BmrFI CCNGG 5 cut(s) 30, 668, 1095, 1220, 1238
BmsI GCATC 5 cut(s) 484, 581, 679, 898, 1049
BpiI GAAGAC 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 727, 1218
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 1094
Bse1I ACTGG 2 cut(s) 379, 637
BseBI CCWGG 4 cut(s) 668, 1095, 1220, 1238
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 727, 1218
BseGI GGATG 4 cut(s) 43, 117, 499, 572
BseLI CCNNNNNNNGG 2 cut(s) 35, 1094
BseNI ACTGG 2 cut(s) 379, 637
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 5 cut(s) 48, 512, 864, 1048, 1173
BseYI CCCAGC 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 511
BshFI GGCC 3 cut(s) 296, 536, 789
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 511
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 185, 452
BslI CCNNNNNNNGG 2 cut(s) 35, 1094
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 2 cut(s) 185, 452
BsnI GGCC 3 cut(s) 296, 536, 789
Bsp143I GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
BspACI CCGC 5 cut(s) 9, 12, 203, 869, 1038
BspANI GGCC 3 cut(s) 296, 536, 789
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 205
BspHI TCATGA 3 cut(s) 388, 484, 718
BspMAI CTGCAG 2 cut(s) 530, 1191
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 4 cut(s) 413, 737, 860, 1117
BspQI GCTCTTC 2 cut(s) 699, 819
BsrI ACTGG 2 cut(s) 379, 637
BssECI CCNNGG 2 cut(s) 727, 1218
BssMI GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
BssNAI GTATAC 1 cut(s) 915
BssSI CACGAG 2 cut(s) 143, 152
BssT1I CCWWGG 1 cut(s) 727
Bst1107I GTATAC 1 cut(s) 915
Bst2BI CACGAG 2 cut(s) 143, 152
Bst2UI CCWGG 4 cut(s) 668, 1095, 1220, 1238
Bst4CI ACNGT 3 cut(s) 22, 176, 1176
Bst6I CTCTTC 3 cut(s) 651, 699, 819
BstAPI GCANNNNNTGC 1 cut(s) 525
BstC8I GCNNGC 4 cut(s) 140, 734, 873, 1263
BstDEI CTNAG 2 cut(s) 65, 426
BstENI CCTNNNNNAGG 1 cut(s) 1092
BstF5I GGATG 4 cut(s) 43, 117, 499, 572
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 9 cut(s) 108, 270, 421, 484, 511, 745, 769, 868, 1112
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
BstMCI CGRYCG 1 cut(s) 511
BstMWI GCNNNNNNNGC 5 cut(s) 12, 525, 877, 886, 1192
BstNI CCWGG 4 cut(s) 668, 1095, 1220, 1238
BstNSI RCATGY 1 cut(s) 736
BstSCI CCNGG 5 cut(s) 28, 666, 1093, 1218, 1236
BstSFI CTRYAG 2 cut(s) 526, 1187
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 5 cut(s) 48, 512, 864, 1048, 1173
BstV2I GAAGAC 1 cut(s) 377
BstXI CCANNNNNNTGG 2 cut(s) 168, 374
BstZ17I GTATAC 1 cut(s) 915
Bsu15I ATCGAT 1 cut(s) 129
BsuI GTATCC 1 cut(s) 26
BsuRI GGCC 3 cut(s) 296, 536, 789
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 4 cut(s) 43, 117, 499, 572
BtsIMutI CAGTG 2 cut(s) 95, 1185
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 4 cut(s) 140, 734, 873, 1263
CciI TCATGA 3 cut(s) 388, 484, 718
CfoI GCGC 1 cut(s) 877
Cfr13I GGNCC 3 cut(s) 295, 330, 1172
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 3 cut(s) 190, 217, 642
CviAII CATG 4 cut(s) 389, 485, 719, 733
CviQI GTAC 3 cut(s) 190, 217, 642
DdeI CTNAG 2 cut(s) 65, 426
DpnI GATC 9 cut(s) 107, 269, 420, 483, 510, 744, 768, 867, 1111
DpnII GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
DraI TTTAAA 1 cut(s) 675
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eam1104I CTCTTC 3 cut(s) 651, 699, 819
EarI CTCTTC 3 cut(s) 651, 699, 819
EciI GGCGGA 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 727
Eco32I GATATC 1 cut(s) 1085
Eco47I GGWCC 2 cut(s) 330, 1172
Eco57I CTGAAG 1 cut(s) 579
EcoNI CCTNNNNNAGG 1 cut(s) 1092
EcoO109I RGGNCCY 2 cut(s) 295, 330
EcoRII CCWGG 4 cut(s) 666, 1093, 1218, 1236
EcoRV GATATC 1 cut(s) 1085
EcoT14I CCWWGG 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 4 cut(s) 392, 488, 722, 736
FalI AAGNNNNNCTT 4 cut(s) 176, 208, 678, 710
FaqI GGGAC 2 cut(s) 185, 452
FatI CATG 4 cut(s) 388, 484, 718, 732
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 9 cut(s) 7, 10, 13, 62, 526, 878, 1062, 1187, 1266
FokI GGATG 4 cut(s) 30, 104, 506, 559
Fsp4HI GCNGC 9 cut(s) 7, 10, 13, 62, 526, 878, 1062, 1187, 1266
FspBI CTAG 4 cut(s) 522, 833, 1044, 1106
GlaI GCGC 1 cut(s) 876
GluI GCNGC 9 cut(s) 7, 10, 13, 62, 526, 878, 1062, 1187, 1266
GsaI CCCAGC 1 cut(s) 382
HaeIII GGCC 3 cut(s) 296, 536, 789
HapII CCGG 1 cut(s) 29
HhaI GCGC 1 cut(s) 877
Hin1II CATG 4 cut(s) 392, 488, 722, 736
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 7 cut(s) 39, 85, 98, 164, 854, 1072, 1121
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 100, 897
Hpy166II GTNNAC 2 cut(s) 589, 915
Hpy188I TCNGA 6 cut(s) 103, 418, 472, 481, 814, 1114
Hpy188III TCNNGA 8 cut(s) 152, 262, 389, 485, 719, 851, 1049, 1076
Hpy8I GTNNAC 2 cut(s) 589, 915
Hpy99I CGWCG 2 cut(s) 56, 1022
HpyAV CCTTC 6 cut(s) 248, 308, 318, 349, 779, 987
HpyCH4III ACNGT 3 cut(s) 22, 176, 1176
HpyCH4IV ACGT 2 cut(s) 349, 591
HpyCH4V TGCA 7 cut(s) 93, 138, 528, 736, 889, 1064, 1189
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 525, 877, 886, 1192
HpyF3I CTNAG 2 cut(s) 65, 426
HpySE526I ACGT 2 cut(s) 349, 591
Hsp92II CATG 4 cut(s) 392, 488, 722, 736
HspAI GCGC 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 481
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
LguI GCTCTTC 2 cut(s) 699, 819
LmnI GCTCC 3 cut(s) 239, 308, 679
Lsp1109I GCAGC 5 cut(s) 48, 512, 864, 1048, 1173
LweI GCATC 5 cut(s) 484, 581, 679, 898, 1049
MaeI CTAG 4 cut(s) 522, 833, 1044, 1106
MaeII ACGT 2 cut(s) 349, 591
MaeIII GTNAC 3 cut(s) 68, 156, 903
MalI GATC 9 cut(s) 107, 269, 420, 483, 510, 744, 768, 867, 1111
MboI GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
MluCI AATT 8 cut(s) 565, 600, 699, 805, 1022, 1115, 1252, 1269
MlyI GAGTC 2 cut(s) 92, 173
MmeI TCCRAC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 1125
MseI TTAA 4 cut(s) 579, 588, 674, 1273
MslI CAYNNNNRTG 2 cut(s) 756, 933
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 5 cut(s) 30, 668, 1095, 1220, 1238
MvaI CCWGG 4 cut(s) 668, 1095, 1220, 1238
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 5 cut(s) 12, 525, 877, 886, 1192
NciI CCSGG 1 cut(s) 30
NdeII GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
NlaIII CATG 4 cut(s) 392, 488, 722, 736
NmuCI GTSAC 2 cut(s) 68, 903
NspI RCATGY 1 cut(s) 736
PaeI GCATGC 1 cut(s) 736
PagI TCATGA 3 cut(s) 388, 484, 718
PciSI GCTCTTC 2 cut(s) 699, 819
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 1125
PfeI GAWTC 5 cut(s) 39, 85, 854, 1072, 1121
PfoI TCCNGGA 1 cut(s) 1236
PkrI GCNGC 9 cut(s) 8, 11, 14, 63, 527, 879, 1063, 1188, 1267
Ple19I CGATCG 1 cut(s) 511
PleI GAGTC 2 cut(s) 92, 172
PpsI GAGTC 2 cut(s) 92, 172
PpuMI RGGWCCY 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 330
Psp6I CCWGG 4 cut(s) 666, 1093, 1218, 1236
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 4 cut(s) 666, 1093, 1218, 1236
PspPI GGNCC 3 cut(s) 295, 330, 1172
PspPPI RGGWCCY 1 cut(s) 330
PstI CTGCAG 2 cut(s) 530, 1191
PvuI CGATCG 1 cut(s) 511
RsaI GTAC 3 cut(s) 191, 218, 643
RsaNI GTAC 3 cut(s) 190, 217, 642
RseI CAYNNNNRTG 2 cut(s) 756, 933
SapI GCTCTTC 2 cut(s) 699, 819
SaqAI TTAA 4 cut(s) 579, 588, 674, 1273
SatI GCNGC 9 cut(s) 7, 10, 13, 62, 526, 878, 1062, 1187, 1266
Sau3AI GATC 9 cut(s) 105, 267, 418, 481, 508, 742, 766, 865, 1109
Sau96I GGNCC 3 cut(s) 295, 330, 1172
SchI GAGTC 2 cut(s) 92, 173
ScrFI CCNGG 5 cut(s) 30, 668, 1095, 1220, 1238
SfaNI GCATC 5 cut(s) 484, 581, 679, 898, 1049
SfcI CTRYAG 2 cut(s) 526, 1187
SinI GGWCC 2 cut(s) 330, 1172
SmiMI CAYNNNNRTG 2 cut(s) 756, 933
SphI GCATGC 1 cut(s) 736
Sse9I AATT 8 cut(s) 565, 600, 699, 805, 1022, 1115, 1252, 1269
SsiI CCGC 5 cut(s) 9, 12, 203, 869, 1038
SspMI CTAG 4 cut(s) 522, 833, 1044, 1106
StyD4I CCNGG 5 cut(s) 28, 666, 1093, 1218, 1236
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 3 cut(s) 22, 176, 1176
TaiI ACGT 2 cut(s) 352, 594
TaqI TCGA 4 cut(s) 129, 359, 507, 511
TasI AATT 8 cut(s) 565, 600, 699, 805, 1022, 1115, 1252, 1269
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 5 cut(s) 39, 85, 854, 1072, 1121
Tru1I TTAA 4 cut(s) 579, 588, 674, 1273
Tru9I TTAA 4 cut(s) 579, 588, 674, 1273
TscAI CASTG 2 cut(s) 95, 1185
TseFI GTSAC 2 cut(s) 68, 903
TseI GCWGC 7 cut(s) 6, 61, 525, 877, 1061, 1186, 1265
Tsp45I GTSAC 2 cut(s) 68, 903
TspDTI ATGAA 5 cut(s) 377, 636, 798, 951, 1199
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 2 cut(s) 95, 1185
VpaK11BI GGWCC 2 cut(s) 330, 1172
XagI CCTNNNNNAGG 1 cut(s) 1092
XapI RAATTY 2 cut(s) 699, 1115
XceI RCATGY 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 914
XmnI GAANNNNTTC 1 cut(s) 1125
XspI CTAG 4 cut(s) 522, 833, 1044, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.