RchiOBHm_Chr1g0366371

Protein-tyrosine-phosphatase MKP1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012651
Physical Location & Seq
Forward (+)
56952595 .. 56953505
911 bp
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UTR
Exon/CDS
Intron
PRQ59093

Sequence Viewer

Length: 192 bp
ATGCTTCCTCAAAATTTCTTCCAACTAAAGAAGATGGTGTTAGGATACATTAGTACTCTCATTCTGGAAGGACATGATAATATTGACAATTTCTTAGAGTCAAGGGATGGGGTTGAAATCGACGGAGGAGACTCAGCACAACAATGTAACATATTCCTGGGTAGGGTAGATTTATCGAATGGCTCATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000188 GO:0001704 GO:0001706 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0007369 GO:0007492 GO:0008138 GO:0008150 GO:0008152 GO:0008330 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009653 GO:0009790 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010224 GO:0010225 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0017017 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033549 GO:0033673 GO:0035335 GO:0035970 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048598 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070372 GO:0070373 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990439
KEGG Pathways
Metabolic & Signaling
ko04010 ko04726 ko05418 map04010 map04726 map05418
Pfam Domains
Protein Families
DSPc

Protein Analysis

63

Amino Acids

6.98

Weight (kDa)

4.31

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 13
BaeI ACNNNNGTAYC 2 cut(s) 37, 70
BccI CCATC 2 cut(s) 28, 101
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 190
BfuI GTATCC 1 cut(s) 38
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 94, 133
BstF5I GGATG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BsuI GTATCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 74, 186
CviJI RGCY 1 cut(s) 183
CviKI_1 RGCY 1 cut(s) 183
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 94, 133
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 77, 189
FaiI YATR 3 cut(s) 75, 152, 187
FatI CATG 2 cut(s) 73, 185
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 190
Hin1II CATG 2 cut(s) 77, 189
HinfI GANTC 2 cut(s) 98, 131
Hpy188III TCNNGA 1 cut(s) 65
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 94, 133
Hsp92II CATG 2 cut(s) 77, 189
LpnPI CCDG 3 cut(s) 50, 143, 170
MaeI CTAG 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 2 cut(s) 10, 43
MluCI AATT 2 cut(s) 13, 88
MlyI GAGTC 2 cut(s) 107, 125
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 18, 119
MslI CAYNNNNRTG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
NlaIII CATG 2 cut(s) 77, 189
PleI GAGTC 2 cut(s) 106, 125
PpsI GAGTC 2 cut(s) 106, 125
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 142
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 2 cut(s) 107, 125
ScrFI CCNGG 1 cut(s) 158
SgeI CNNG 5 cut(s) 77, 86, 114, 169, 170
SmiMI CAYNNNNRTG 1 cut(s) 142
Sse9I AATT 2 cut(s) 13, 88
SspI AATATT 1 cut(s) 82
SspMI CTAG 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 156
TaqI TCGA 2 cut(s) 120, 176
TasI AATT 2 cut(s) 13, 88
TatI WGTACW 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 138
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 190
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.